Gene annotation
Transcriptome id Sobic.002G017900.1
Synonym Sb02g001710
Functional annotation tetratricopeptide repeat containing protein, putative, expressed
UniProt C5X829
Pfam PF13414
Panther DB PTHR15081 PTHR15081:SF1
NCBI CDD KOG4563; Cell cycle-regulated histone H1-binding protein
KEGG Orthology K11291; nuclear autoantigenic sperm protein
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G37210 : Tetratricopeptide repeat (TPR)-like superfamily protein
RAP-DB (Rice) LOC_Os07g03070.1 : tetratricopeptide repeat containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a031023 , Zm00025a016211
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.002G017900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G430900 PWWP domain containing protein, expressed -
2 Sobic.004G198900 expressed protein -
3 Sobic.005G120700 ThiF family domain containing protein, putative, expressed K10684: UBLE1A, ubiquitin-like 1-activating enzyme E1 A
4 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
5 Sobic.003G274400 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
6 Sobic.009G006900 ZOS5-01 - C2H2 zinc finger protein, expressed -
7 Sobic.002G177500 expressed protein -
8 Sobic.002G339800 B3 DNA binding domain containing protein, putative, expressed -
9 Sobic.004G207000 fasciated ear2, putative, expressed -
10 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
11 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
12 Sobic.009G192500 OsFBX169 - F-box domain containing protein, expressed -
13 Sobic.006G067700 "protein kinase (like ACGVIII kinase called KIPK, a KCBP-interacting protein kinase)"(PubMedID : 28676627)@AGC_PVPK_like_kin82y.19 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
14 Sobic.004G287100 tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
15 Sobic.002G318600 RNA recognition motif containing protein, putative, expressed -
16 Sobic.004G129600 expressed protein -
17 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3
18 Sobic.009G031500 agenet domain containing protein, putative, expressed -
19 Sobic.004G111000 bromodomain containing protein, expressed -
20 Sobic.007G031300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -


Gene co-expression network
sample Sobic002G017900 Sobic002G017900 Sobic002G430900 Sobic002G430900 Sobic002G017900--Sobic002G430900 Sobic004G198900 Sobic004G198900 Sobic002G017900--Sobic004G198900 Sobic005G120700 Sobic005G120700 Sobic002G017900--Sobic005G120700 Sobic007G125700 Sobic007G125700 Sobic002G017900--Sobic007G125700 Sobic003G274400 Sobic003G274400 Sobic002G017900--Sobic003G274400 Sobic009G006900 Sobic009G006900 Sobic002G017900--Sobic009G006900 Sobic002G177500 Sobic002G177500 Sobic002G017900--Sobic002G177500 Sobic002G339800 Sobic002G339800 Sobic002G017900--Sobic002G339800 Sobic004G207000 Sobic004G207000 Sobic002G017900--Sobic004G207000 Sobic002G430900--Sobic007G125700 Sobic002G219900 Sobic002G219900 Sobic002G430900--Sobic002G219900 Sobic010G269300 Sobic010G269300 Sobic002G430900--Sobic010G269300 Sobic010G149600 Sobic010G149600 Sobic002G430900--Sobic010G149600 Sobic009G192500 Sobic009G192500 Sobic002G430900--Sobic009G192500 Sobic002G430900--Sobic002G017900 Sobic001G395200 Sobic001G395200 Sobic002G430900--Sobic001G395200 Sobic002G430900--Sobic009G006900 Sobic002G430900--Sobic005G120700 Sobic004G198900--Sobic002G017900 Sobic006G242500 Sobic006G242500 Sobic004G198900--Sobic006G242500 Sobic004G212700 Sobic004G212700 Sobic004G198900--Sobic004G212700 Sobic004G198900--Sobic005G120700 Sobic006G233000 Sobic006G233000 Sobic004G198900--Sobic006G233000 Sobic010G032400 Sobic010G032400 Sobic004G198900--Sobic010G032400 Sobic004G198900--Sobic003G274400 Sobic001G536000 Sobic001G536000 Sobic004G198900--Sobic001G536000 Sobic004G155600 Sobic004G155600 Sobic004G198900--Sobic004G155600 Sobic005G120700--Sobic010G269300 Sobic005G120700--Sobic002G430900 Sobic004G287100 Sobic004G287100 Sobic005G120700--Sobic004G287100 Sobic005G120700--Sobic002G017900 Sobic004G256300 Sobic004G256300 Sobic005G120700--Sobic004G256300 Sobic003G222700 Sobic003G222700 Sobic005G120700--Sobic003G222700 Sobic003G360300 Sobic003G360300 Sobic005G120700--Sobic003G360300 Sobic006G245700 Sobic006G245700 Sobic005G120700--Sobic006G245700 Sobic002G252100 Sobic002G252100 Sobic005G120700--Sobic002G252100 Sobic007G125700--Sobic002G430900 Sobic007G125700--Sobic004G207000 Sobic007G125700--Sobic010G149600 Sobic007G125700--Sobic010G269300 Sobic007G125700--Sobic002G219900 Sobic003G077500 Sobic003G077500 Sobic007G125700--Sobic003G077500 Sobic007G125700--Sobic001G395200 Sobic004G043750 Sobic004G043750 Sobic007G125700--Sobic004G043750 Sobic006G280100 Sobic006G280100 Sobic007G125700--Sobic006G280100 Sobic003G274400--Sobic002G219900 Sobic003G274400--Sobic006G245700 Sobic001G436300 Sobic001G436300 Sobic003G274400--Sobic001G436300 Sobic003G274400--Sobic007G125700 Sobic009G031500 Sobic009G031500 Sobic003G274400--Sobic009G031500 Sobic004G129600 Sobic004G129600 Sobic003G274400--Sobic004G129600 Sobic003G274400--Sobic002G430900 Sobic003G274400--Sobic002G017900 Sobic003G274400--Sobic006G280100 Sobic009G006900--Sobic004G207000 Sobic009G006900--Sobic010G149600 Sobic006G272800 Sobic006G272800 Sobic009G006900--Sobic006G272800 Sobic009G006900--Sobic002G430900 Sobic002G196500 Sobic002G196500 Sobic009G006900--Sobic002G196500 Sobic005G062600 Sobic005G062600 Sobic009G006900--Sobic005G062600 Sobic002G302600 Sobic002G302600 Sobic009G006900--Sobic002G302600 Sobic009G006900--Sobic002G017900 Sobic001G540700 Sobic001G540700 Sobic009G006900--Sobic001G540700 Sobic001G370300 Sobic001G370300 Sobic002G177500--Sobic001G370300 Sobic004G285000 Sobic004G285000 Sobic002G177500--Sobic004G285000 Sobic001G168100 Sobic001G168100 Sobic002G177500--Sobic001G168100 Sobic003G436600 Sobic003G436600 Sobic002G177500--Sobic003G436600 Sobic001G013300 Sobic001G013300 Sobic002G177500--Sobic001G013300 Sobic002G223300 Sobic002G223300 Sobic002G177500--Sobic002G223300 Sobic002G399200 Sobic002G399200 Sobic002G177500--Sobic002G399200 Sobic006G226300 Sobic006G226300 Sobic002G177500--Sobic006G226300 Sobic009G151200 Sobic009G151200 Sobic002G177500--Sobic009G151200 Sobic002G339800--Sobic002G223300 Sobic002G339800--Sobic002G177500 Sobic002G339800--Sobic002G017900 Sobic002G263200 Sobic002G263200 Sobic002G339800--Sobic002G263200 Sobic009G045300 Sobic009G045300 Sobic002G339800--Sobic009G045300 Sobic002G339800--Sobic001G013300 Sobic002G339800--Sobic004G285000 Sobic002G339800--Sobic001G168100 Sobic010G063566 Sobic010G063566 Sobic002G339800--Sobic010G063566 Sobic006G022400 Sobic006G022400 Sobic004G207000--Sobic006G022400 Sobic004G207000--Sobic001G540700 Sobic004G207000--Sobic007G125700 Sobic004G207000--Sobic009G006900 Sobic004G207000--Sobic002G302600 Sobic004G149400 Sobic004G149400 Sobic004G207000--Sobic004G149400 Sobic005G032600 Sobic005G032600 Sobic004G207000--Sobic005G032600 Sobic004G207000--Sobic010G149600 Sobic004G207000--Sobic009G031500
Octagon: transcription factors


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