Gene annotation
Transcriptome id Sobic.002G318600.1
Synonym ATRBP45C
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1B6QEI9
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF434
NCBI CDD KOG0148; Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G11650 : RNA-binding (RRM/RBD/RNP motifs) family protein
RAP-DB (Rice) LOC_Os07g33330.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a048222 , Zm00025a014795 , Zm00025a018470
Brachypodium KQK15991 , KQK15990 , KQJ82883 , KQJ99982
Barley HORVU2Hr1G046380.1 , HORVU2Hr1G046380.3 , HORVU2Hr1G046380.2 , HORVU2Hr1G046380.5 , HORVU2Hr1G046380.4 , HORVU2Hr1G046380.7 , HORVU2Hr1G046380.6 , HORVU2Hr1G046380.9 , HORVU2Hr1G046380.8 , HORVU6Hr1G048390.1 , HORVU6Hr1G048390.2 , HORVU6Hr1G048390.3 , HORVU2Hr1G078910.10 , HORVU2Hr1G046380.11 , HORVU2Hr1G046380.10 , HORVU2Hr1G078910.9 , HORVU2Hr1G078910.8 , HORVU2Hr1G078910.4 , HORVU2Hr1G078910.7 , HORVU2Hr1G078910.6 , HORVU2Hr1G078910.3 , HORVU2Hr1G078910.2
Wheat TraesCS2B02G247400 , TraesCS2B02G247400 , TraesCS2B02G247400 , TraesCS2A02G221900 , TraesCS2A02G221900 , TraesCS2A02G221900 , TraesCS2B02G335700 , TraesCS2B02G335700 , TraesCS2B02G335700 , TraesCS2A02G317700 , TraesCS2A02G317700 , TraesCS2A02G317700 , TraesCS2B02G247400 , TraesCS2D02G227900 , TraesCS2D02G227900 , TraesCS2D02G227900 , TraesCS2D02G227900 , TraesCS2D02G315400 , TraesCS2D02G315400 , TraesCS2D02G315400 , TraesCS2D02G227900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G242500 CDT1B - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
2 Sobic.002G430900 PWWP domain containing protein, expressed -
3 Sobic.002G394800 SWIB/MDM2 domain containing protein, expressed K11650: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
4 Sobic.004G287100 tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
5 Sobic.008G125000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta
6 Sobic.005G120700 ThiF family domain containing protein, putative, expressed K10684: UBLE1A, ubiquitin-like 1-activating enzyme E1 A
7 Sobic.008G013300 expressed protein -
8 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3
9 Sobic.002G017900 tetratricopeptide repeat containing protein, putative, expressed K11291: nuclear autoantigenic sperm protein
10 Sobic.007G010900 esterase, putative, expressed -
11 Sobic.001G122100 protein kinase family protein, putative, expressed K08866: TTK, serine/threonine-protein kinase TTK/MPS1
12 Sobic.007G075100 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
13 Sobic.004G129600 expressed protein -
14 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
15 Sobic.004G330600 GHMP kinases ATP-binding protein, putative, expressed K01597: MVD, diphosphomevalonate decarboxylase
16 Sobic.001G217100 double-stranded RNA binding motif containing protein, expressed -
17 Sobic.004G198900 expressed protein -
18 Sobic.001G143600 pattern formation protein EMB30, putative, expressed K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
19 Sobic.002G339800 B3 DNA binding domain containing protein, putative, expressed -
20 Sobic.004G047200 T-complex protein, putative, expressed K09499: T-complex protein 1 subunit eta


Gene co-expression network
sample Sobic002G318600 Sobic002G318600 Sobic006G242500 Sobic006G242500 Sobic002G318600--Sobic006G242500 Sobic002G430900 Sobic002G430900 Sobic002G318600--Sobic002G430900 Sobic002G394800 Sobic002G394800 Sobic002G318600--Sobic002G394800 Sobic004G287100 Sobic004G287100 Sobic002G318600--Sobic004G287100 Sobic008G125000 Sobic008G125000 Sobic002G318600--Sobic008G125000 Sobic005G120700 Sobic005G120700 Sobic002G318600--Sobic005G120700 Sobic008G013300 Sobic008G013300 Sobic002G318600--Sobic008G013300 Sobic002G219900 Sobic002G219900 Sobic002G318600--Sobic002G219900 Sobic002G017900 Sobic002G017900 Sobic002G318600--Sobic002G017900 Sobic001G143600 Sobic001G143600 Sobic006G242500--Sobic001G143600 Sobic001G210000 Sobic001G210000 Sobic006G242500--Sobic001G210000 Sobic004G198900 Sobic004G198900 Sobic006G242500--Sobic004G198900 Sobic003G274400 Sobic003G274400 Sobic006G242500--Sobic003G274400 Sobic009G045300 Sobic009G045300 Sobic006G242500--Sobic009G045300 Sobic006G242500--Sobic002G318600 Sobic004G307900 Sobic004G307900 Sobic006G242500--Sobic004G307900 Sobic006G188800 Sobic006G188800 Sobic006G242500--Sobic006G188800 Sobic001G397800 Sobic001G397800 Sobic006G242500--Sobic001G397800 Sobic007G125700 Sobic007G125700 Sobic002G430900--Sobic007G125700 Sobic002G430900--Sobic002G219900 Sobic010G269300 Sobic010G269300 Sobic002G430900--Sobic010G269300 Sobic010G149600 Sobic010G149600 Sobic002G430900--Sobic010G149600 Sobic009G192500 Sobic009G192500 Sobic002G430900--Sobic009G192500 Sobic002G430900--Sobic002G017900 Sobic001G395200 Sobic001G395200 Sobic002G430900--Sobic001G395200 Sobic009G006900 Sobic009G006900 Sobic002G430900--Sobic009G006900 Sobic002G430900--Sobic005G120700 Sobic006G233300 Sobic006G233300 Sobic002G394800--Sobic006G233300 Sobic002G143900 Sobic002G143900 Sobic002G394800--Sobic002G143900 Sobic006G233000 Sobic006G233000 Sobic002G394800--Sobic006G233000 Sobic002G280600 Sobic002G280600 Sobic002G394800--Sobic002G280600 Sobic006G245700 Sobic006G245700 Sobic002G394800--Sobic006G245700 Sobic006G272200 Sobic006G272200 Sobic002G394800--Sobic006G272200 Sobic001G370300 Sobic001G370300 Sobic002G394800--Sobic001G370300 Sobic004G249300 Sobic004G249300 Sobic002G394800--Sobic004G249300 Sobic002G394800--Sobic002G430900 Sobic007G209600 Sobic007G209600 Sobic004G287100--Sobic007G209600 Sobic004G287100--Sobic005G120700 Sobic001G061800 Sobic001G061800 Sobic004G287100--Sobic001G061800 Sobic001G033000 Sobic001G033000 Sobic004G287100--Sobic001G033000 Sobic004G287100--Sobic002G318600 Sobic004G287100--Sobic001G210000 Sobic004G287100--Sobic002G430900 Sobic010G250800 Sobic010G250800 Sobic004G287100--Sobic010G250800 Sobic001G122100 Sobic001G122100 Sobic004G287100--Sobic001G122100 Sobic009G056300 Sobic009G056300 Sobic008G125000--Sobic009G056300 Sobic001G115500 Sobic001G115500 Sobic008G125000--Sobic001G115500 Sobic008G125000--Sobic006G245700 Sobic003G307900 Sobic003G307900 Sobic008G125000--Sobic003G307900 Sobic004G075200 Sobic004G075200 Sobic008G125000--Sobic004G075200 Sobic009G120500 Sobic009G120500 Sobic008G125000--Sobic009G120500 Sobic007G010900 Sobic007G010900 Sobic008G125000--Sobic007G010900 Sobic006G041100 Sobic006G041100 Sobic008G125000--Sobic006G041100 Sobic004G358900 Sobic004G358900 Sobic008G125000--Sobic004G358900 Sobic005G120700--Sobic010G269300 Sobic005G120700--Sobic002G430900 Sobic005G120700--Sobic004G287100 Sobic005G120700--Sobic002G017900 Sobic004G256300 Sobic004G256300 Sobic005G120700--Sobic004G256300 Sobic003G222700 Sobic003G222700 Sobic005G120700--Sobic003G222700 Sobic003G360300 Sobic003G360300 Sobic005G120700--Sobic003G360300 Sobic005G120700--Sobic006G245700 Sobic002G252100 Sobic002G252100 Sobic005G120700--Sobic002G252100 Sobic002G297600 Sobic002G297600 Sobic008G013300--Sobic002G297600 Sobic008G013300--Sobic001G115500 Sobic003G361400 Sobic003G361400 Sobic008G013300--Sobic003G361400 Sobic008G013300--Sobic002G318600 Sobic008G013300--Sobic007G010900 Sobic009G073400 Sobic009G073400 Sobic008G013300--Sobic009G073400 Sobic003G259600 Sobic003G259600 Sobic008G013300--Sobic003G259600 Sobic002G264300 Sobic002G264300 Sobic008G013300--Sobic002G264300 Sobic008G040700 Sobic008G040700 Sobic008G013300--Sobic008G040700 Sobic002G219900--Sobic002G430900 Sobic002G219900--Sobic010G149600 Sobic002G219900--Sobic007G125700 Sobic002G219900--Sobic001G395200 Sobic006G280100 Sobic006G280100 Sobic002G219900--Sobic006G280100 Sobic002G219900--Sobic003G361400 Sobic002G219900--Sobic001G143600 Sobic002G219900--Sobic003G274400 Sobic003G027800 Sobic003G027800 Sobic002G219900--Sobic003G027800 Sobic002G017900--Sobic002G430900 Sobic002G017900--Sobic004G198900 Sobic002G017900--Sobic005G120700 Sobic002G017900--Sobic007G125700 Sobic002G017900--Sobic003G274400 Sobic002G017900--Sobic009G006900 Sobic002G177500 Sobic002G177500 Sobic002G017900--Sobic002G177500 Sobic002G339800 Sobic002G339800 Sobic002G017900--Sobic002G339800 Sobic004G207000 Sobic004G207000 Sobic002G017900--Sobic004G207000
Octagon: transcription factors


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