Gene annotation
Transcriptome id Sobic.004G287100.2,Sobic.004G287100.1
Synonym Sb04g032290
Functional annotation tRNA pseudouridine synthase family protein, putative, expressed
UniProt A0A194YS26 , C5Y1C3
Pfam PF01416
Panther DB PTHR11142 PTHR11142:SF4
NCBI CDD KOG2553; Pseudouridylate synthase
KEGG Orthology K06173; truA, tRNA pseudouridine38-40 synthase
Gene Ontology GO:0009982; pseudouridine synthase activity GO:0009451RNA modification GO:0003723RNA binding GO:0001522pseudouridine synthesis


Orthologs (automatic annotation)
TAIR AT1G20370 : Pseudouridine synthase family protein
RAP-DB (Rice) LOC_Os02g44810.1 : tRNA pseudouridine synthase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a021461
Brachypodium KQK00697
Barley HORVU6Hr1G064480.2 , HORVU6Hr1G064480.3 , HORVU6Hr1G064480.1
Wheat TraesCS6D02G234300 , TraesCS6A02G252800
Populus -


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cDNA sequences
Sobic.004G287100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G209600 ENT domain containing protein, expressed -
2 Sobic.005G120700 ThiF family domain containing protein, putative, expressed K10684: UBLE1A, ubiquitin-like 1-activating enzyme E1 A
3 Sobic.001G061800 RFC3 - Putative clamp loader of PCNA, replication factor C subunit 3, expressed K10756: replication factor C subunit 3/5
4 Sobic.001G033000 ribosomal RNA large subunit methyltransferase J, putative, expressed -
5 Sobic.002G318600 RNA recognition motif containing protein, putative, expressed -
6 Sobic.001G210000 CDT1B - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
7 Sobic.002G430900 PWWP domain containing protein, expressed -
8 Sobic.010G250800 DNA binding protein, putative, expressed -
9 Sobic.001G122100 protein kinase family protein, putative, expressed K08866: TTK, serine/threonine-protein kinase TTK/MPS1
10 Sobic.002G017900 tetratricopeptide repeat containing protein, putative, expressed K11291: nuclear autoantigenic sperm protein
11 Sobic.003G361400 nsp1-like C-terminal region family protein, expressed K14306: NUP62, nuclear pore complex protein Nup62
12 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3
13 Sobic.002G110500 expressed protein K14308: NUP54, nuclear pore complex protein Nup54
14 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
15 Sobic.009G049200 Spc97 / Spc98 family protein, putative, expressed K16571: TUBGCP4, gamma-tubulin complex component 4
16 Sobic.003G274400 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
17 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
18 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
19 Sobic.004G198900 expressed protein -
20 Sobic.003G360300 exostosin family domain containing protein, expressed -


Gene co-expression network
sample Sobic004G287100 Sobic004G287100 Sobic007G209600 Sobic007G209600 Sobic004G287100--Sobic007G209600 Sobic005G120700 Sobic005G120700 Sobic004G287100--Sobic005G120700 Sobic001G061800 Sobic001G061800 Sobic004G287100--Sobic001G061800 Sobic001G033000 Sobic001G033000 Sobic004G287100--Sobic001G033000 Sobic002G318600 Sobic002G318600 Sobic004G287100--Sobic002G318600 Sobic001G210000 Sobic001G210000 Sobic004G287100--Sobic001G210000 Sobic002G430900 Sobic002G430900 Sobic004G287100--Sobic002G430900 Sobic010G250800 Sobic010G250800 Sobic004G287100--Sobic010G250800 Sobic001G122100 Sobic001G122100 Sobic004G287100--Sobic001G122100 Sobic001G211500 Sobic001G211500 Sobic007G209600--Sobic001G211500 Sobic007G209600--Sobic004G287100 Sobic002G219900 Sobic002G219900 Sobic007G209600--Sobic002G219900 Sobic003G212600 Sobic003G212600 Sobic007G209600--Sobic003G212600 Sobic001G300000 Sobic001G300000 Sobic007G209600--Sobic001G300000 Sobic003G311500 Sobic003G311500 Sobic007G209600--Sobic003G311500 Sobic007G209600--Sobic001G210000 Sobic004G343200 Sobic004G343200 Sobic007G209600--Sobic004G343200 Sobic004G352100 Sobic004G352100 Sobic007G209600--Sobic004G352100 Sobic010G269300 Sobic010G269300 Sobic005G120700--Sobic010G269300 Sobic005G120700--Sobic002G430900 Sobic005G120700--Sobic004G287100 Sobic002G017900 Sobic002G017900 Sobic005G120700--Sobic002G017900 Sobic004G256300 Sobic004G256300 Sobic005G120700--Sobic004G256300 Sobic003G222700 Sobic003G222700 Sobic005G120700--Sobic003G222700 Sobic003G360300 Sobic003G360300 Sobic005G120700--Sobic003G360300 Sobic006G245700 Sobic006G245700 Sobic005G120700--Sobic006G245700 Sobic002G252100 Sobic002G252100 Sobic005G120700--Sobic002G252100 Sobic001G408300 Sobic001G408300 Sobic001G061800--Sobic001G408300 Sobic003G223500 Sobic003G223500 Sobic001G061800--Sobic003G223500 Sobic005G088900 Sobic005G088900 Sobic001G061800--Sobic005G088900 Sobic001G024000 Sobic001G024000 Sobic001G061800--Sobic001G024000 Sobic005G028100 Sobic005G028100 Sobic001G061800--Sobic005G028100 Sobic004G047200 Sobic004G047200 Sobic001G061800--Sobic004G047200 Sobic008G009600 Sobic008G009600 Sobic001G061800--Sobic008G009600 Sobic006G251600 Sobic006G251600 Sobic001G061800--Sobic006G251600 Sobic001G061800--Sobic004G287100 Sobic001G033000--Sobic004G287100 Sobic001G033000--Sobic006G245700 Sobic001G033000--Sobic005G120700 Sobic003G199700 Sobic003G199700 Sobic001G033000--Sobic003G199700 Sobic001G107300 Sobic001G107300 Sobic001G033000--Sobic001G107300 Sobic001G033000--Sobic006G251600 Sobic001G033000--Sobic007G209600 Sobic006G127500 Sobic006G127500 Sobic001G033000--Sobic006G127500 Sobic001G033000--Sobic001G061800 Sobic006G242500 Sobic006G242500 Sobic002G318600--Sobic006G242500 Sobic002G318600--Sobic002G430900 Sobic002G394800 Sobic002G394800 Sobic002G318600--Sobic002G394800 Sobic002G318600--Sobic004G287100 Sobic008G125000 Sobic008G125000 Sobic002G318600--Sobic008G125000 Sobic002G318600--Sobic005G120700 Sobic008G013300 Sobic008G013300 Sobic002G318600--Sobic008G013300 Sobic002G318600--Sobic002G219900 Sobic002G318600--Sobic002G017900 Sobic001G006800 Sobic001G006800 Sobic001G210000--Sobic001G006800 Sobic001G210000--Sobic003G212600 Sobic007G031300 Sobic007G031300 Sobic001G210000--Sobic007G031300 Sobic009G087300 Sobic009G087300 Sobic001G210000--Sobic009G087300 Sobic001G210000--Sobic007G209600 Sobic009G049200 Sobic009G049200 Sobic001G210000--Sobic009G049200 Sobic001G210000--Sobic006G242500 Sobic001G210000--Sobic004G287100 Sobic005G163400 Sobic005G163400 Sobic001G210000--Sobic005G163400 Sobic007G125700 Sobic007G125700 Sobic002G430900--Sobic007G125700 Sobic002G430900--Sobic002G219900 Sobic002G430900--Sobic010G269300 Sobic010G149600 Sobic010G149600 Sobic002G430900--Sobic010G149600 Sobic009G192500 Sobic009G192500 Sobic002G430900--Sobic009G192500 Sobic002G430900--Sobic002G017900 Sobic001G395200 Sobic001G395200 Sobic002G430900--Sobic001G395200 Sobic009G006900 Sobic009G006900 Sobic002G430900--Sobic009G006900 Sobic002G430900--Sobic005G120700 Sobic009G052100 Sobic009G052100 Sobic010G250800--Sobic009G052100 Sobic007G006800 Sobic007G006800 Sobic010G250800--Sobic007G006800 Sobic006G071628 Sobic006G071628 Sobic010G250800--Sobic006G071628 Sobic010G250800--Sobic001G408300 Sobic001G385400 Sobic001G385400 Sobic010G250800--Sobic001G385400 Sobic009G167100 Sobic009G167100 Sobic010G250800--Sobic009G167100 Sobic010G250800--Sobic005G088900 Sobic010G250800--Sobic009G049200 Sobic004G038100 Sobic004G038100 Sobic010G250800--Sobic004G038100 Sobic002G303800 Sobic002G303800 Sobic001G122100--Sobic002G303800 Sobic001G122100--Sobic009G087300 Sobic006G281400 Sobic006G281400 Sobic001G122100--Sobic006G281400 Sobic003G369200 Sobic003G369200 Sobic001G122100--Sobic003G369200 Sobic002G021200 Sobic002G021200 Sobic001G122100--Sobic002G021200 Sobic003G444300 Sobic003G444300 Sobic001G122100--Sobic003G444300 Sobic001G122100--Sobic009G052100 Sobic010G105400 Sobic010G105400 Sobic001G122100--Sobic010G105400 Sobic010G252700 Sobic010G252700 Sobic001G122100--Sobic010G252700
Octagon: transcription factors


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