Gene annotation
Transcriptome id Sobic.003G274400.1
Synonym Sb03g032630, NFC4, FVE, NFC04, ACG1, MSI4, ATMSI4
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5XI77
Pfam PF12265 PF00400
Panther DB PTHR22850 PTHR22850:SF85
NCBI CDD KOG0264; Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1
KEGG Orthology K10752; RBBP4, HAT2, CAF1, histone-binding protein RBBP4
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT2G19520 : Transducin family protein / WD-40 repeat family protein
RAP-DB (Rice) LOC_Os01g51300.2 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a034473 , Zm00025a027816 , Zm00025a038580 , Zm00025a038940
Brachypodium KQK09431
Barley HORVU3Hr1G066930.1 , HORVU3Hr1G066930.3 , HORVU3Hr1G066930.2
Wheat TraesCS3B02G280400 , TraesCS3A02G250900 , TraesCS3A02G250900 , TraesCS3D02G251300 , TraesCS3D02G251300 , TraesCS3B02G280400 , TraesCS3A02G250900
Populus PNS93063 , PNS93064 , PNT31840 , PNT31842 , PNT31841


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cDNA sequences
Sobic.003G274400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3
2 Sobic.006G245700 COP9 signalosome complex subunit 5b, putative, expressed K09613: COPS5, COP9 signalosome complex subunit 5
3 Sobic.001G436300 nucleotide-sensitive chloride conductance regulator containing protein, expressed K05019: chloride channel, nucleotide-sensitive, 1A
4 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
5 Sobic.009G031500 agenet domain containing protein, putative, expressed -
6 Sobic.004G129600 expressed protein -
7 Sobic.002G430900 PWWP domain containing protein, expressed -
8 Sobic.002G017900 tetratricopeptide repeat containing protein, putative, expressed K11291: nuclear autoantigenic sperm protein
9 Sobic.006G280100 SET domain containing protein, expressed -
10 Sobic.001G540700 expressed protein -
11 Sobic.009G006900 ZOS5-01 - C2H2 zinc finger protein, expressed -
12 Sobic.010G149600 intracellular protein transport protein USO1-related, putative, expressed -
13 Sobic.004G212700 RNA recognition motif containing protein, putative, expressed K12883: NCBP2, nuclear cap-binding protein subunit 2
14 Sobic.006G242500 CDT1B - Putative DNA replication initiation protein, expressed K10727: chromatin licensing and DNA replication factor 1
15 Sobic.007G153700 transcription regulator, putative, expressed -
16 Sobic.003G212600 ubiquitin-conjugating enzyme, putative, expressed K13960: UBE2T, ubiquitin-conjugating enzyme E2 T
17 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
18 Sobic.004G043750 - K16251: DNA-directed RNA polymerase V subunit 1
19 Sobic.006G032600 RING finger protein 13, putative, expressed K15692: RNF13, E3 ubiquitin-protein ligase RNF13
20 Sobic.001G487200 zinc finger, C3HC4 type domain containing protein, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins


Gene co-expression network
sample Sobic003G274400 Sobic003G274400 Sobic002G219900 Sobic002G219900 Sobic003G274400--Sobic002G219900 Sobic006G245700 Sobic006G245700 Sobic003G274400--Sobic006G245700 Sobic001G436300 Sobic001G436300 Sobic003G274400--Sobic001G436300 Sobic007G125700 Sobic007G125700 Sobic003G274400--Sobic007G125700 Sobic009G031500 Sobic009G031500 Sobic003G274400--Sobic009G031500 Sobic004G129600 Sobic004G129600 Sobic003G274400--Sobic004G129600 Sobic002G430900 Sobic002G430900 Sobic003G274400--Sobic002G430900 Sobic002G017900 Sobic002G017900 Sobic003G274400--Sobic002G017900 Sobic006G280100 Sobic006G280100 Sobic003G274400--Sobic006G280100 Sobic002G219900--Sobic002G430900 Sobic010G149600 Sobic010G149600 Sobic002G219900--Sobic010G149600 Sobic002G219900--Sobic007G125700 Sobic001G395200 Sobic001G395200 Sobic002G219900--Sobic001G395200 Sobic002G219900--Sobic006G280100 Sobic003G361400 Sobic003G361400 Sobic002G219900--Sobic003G361400 Sobic001G143600 Sobic001G143600 Sobic002G219900--Sobic001G143600 Sobic002G219900--Sobic003G274400 Sobic003G027800 Sobic003G027800 Sobic002G219900--Sobic003G027800 Sobic004G256300 Sobic004G256300 Sobic006G245700--Sobic004G256300 Sobic001G370300 Sobic001G370300 Sobic006G245700--Sobic001G370300 Sobic008G125000 Sobic008G125000 Sobic006G245700--Sobic008G125000 Sobic006G245700--Sobic003G274400 Sobic001G115500 Sobic001G115500 Sobic006G245700--Sobic001G115500 Sobic002G394800 Sobic002G394800 Sobic006G245700--Sobic002G394800 Sobic006G245700--Sobic001G436300 Sobic003G221500 Sobic003G221500 Sobic006G245700--Sobic003G221500 Sobic001G157600 Sobic001G157600 Sobic006G245700--Sobic001G157600 Sobic006G127500 Sobic006G127500 Sobic001G436300--Sobic006G127500 Sobic001G235700 Sobic001G235700 Sobic001G436300--Sobic001G235700 Sobic001G436300--Sobic001G115500 Sobic001G436300--Sobic003G274400 Sobic001G008500 Sobic001G008500 Sobic001G436300--Sobic001G008500 Sobic001G436300--Sobic006G245700 Sobic004G343600 Sobic004G343600 Sobic001G436300--Sobic004G343600 Sobic002G317600 Sobic002G317600 Sobic001G436300--Sobic002G317600 Sobic001G097400 Sobic001G097400 Sobic001G436300--Sobic001G097400 Sobic007G125700--Sobic002G430900 Sobic004G207000 Sobic004G207000 Sobic007G125700--Sobic004G207000 Sobic007G125700--Sobic010G149600 Sobic010G269300 Sobic010G269300 Sobic007G125700--Sobic010G269300 Sobic007G125700--Sobic002G219900 Sobic003G077500 Sobic003G077500 Sobic007G125700--Sobic003G077500 Sobic007G125700--Sobic001G395200 Sobic004G043750 Sobic004G043750 Sobic007G125700--Sobic004G043750 Sobic007G125700--Sobic006G280100 Sobic009G031500--Sobic004G207000 Sobic001G540700 Sobic001G540700 Sobic009G031500--Sobic001G540700 Sobic006G126600 Sobic006G126600 Sobic009G031500--Sobic006G126600 Sobic009G031500--Sobic007G125700 Sobic001G487200 Sobic001G487200 Sobic009G031500--Sobic001G487200 Sobic009G031500--Sobic003G274400 Sobic009G031500--Sobic003G077500 Sobic004G206300 Sobic004G206300 Sobic009G031500--Sobic004G206300 Sobic009G031500--Sobic003G027800 Sobic004G212700 Sobic004G212700 Sobic004G129600--Sobic004G212700 Sobic004G129600--Sobic004G206300 Sobic004G129600--Sobic003G274400 Sobic004G129600--Sobic009G031500 Sobic001G335500 Sobic001G335500 Sobic004G129600--Sobic001G335500 Sobic004G129600--Sobic007G125700 Sobic007G153700 Sobic007G153700 Sobic004G129600--Sobic007G153700 Sobic004G129600--Sobic004G043750 Sobic004G129600--Sobic002G017900 Sobic002G430900--Sobic007G125700 Sobic002G430900--Sobic002G219900 Sobic002G430900--Sobic010G269300 Sobic002G430900--Sobic010G149600 Sobic009G192500 Sobic009G192500 Sobic002G430900--Sobic009G192500 Sobic002G430900--Sobic002G017900 Sobic002G430900--Sobic001G395200 Sobic009G006900 Sobic009G006900 Sobic002G430900--Sobic009G006900 Sobic005G120700 Sobic005G120700 Sobic002G430900--Sobic005G120700 Sobic002G017900--Sobic002G430900 Sobic004G198900 Sobic004G198900 Sobic002G017900--Sobic004G198900 Sobic002G017900--Sobic005G120700 Sobic002G017900--Sobic007G125700 Sobic002G017900--Sobic003G274400 Sobic002G017900--Sobic009G006900 Sobic002G177500 Sobic002G177500 Sobic002G017900--Sobic002G177500 Sobic002G339800 Sobic002G339800 Sobic002G017900--Sobic002G339800 Sobic002G017900--Sobic004G207000 Sobic009G190200 Sobic009G190200 Sobic006G280100--Sobic009G190200 Sobic006G280100--Sobic002G219900 Sobic006G280100--Sobic004G043750 Sobic004G038100 Sobic004G038100 Sobic006G280100--Sobic004G038100 Sobic007G159200 Sobic007G159200 Sobic006G280100--Sobic007G159200 Sobic003G135500 Sobic003G135500 Sobic006G280100--Sobic003G135500 Sobic006G280100--Sobic007G125700 Sobic002G079100 Sobic002G079100 Sobic006G280100--Sobic002G079100 Sobic008G080500 Sobic008G080500 Sobic006G280100--Sobic008G080500
Octagon: transcription factors


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