Gene annotation
Transcriptome id Sobic.006G280100.1
Synonym Sb06g034060, SDG18, SUVR2
Functional annotation SET domain containing protein, expressed
UniProt C5YB47
Pfam PF05033 PF00856 PF10440
Panther DB PTHR22884 PTHR22884:SF366
NCBI CDD KOG1082; Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing
KEGG Orthology -
Gene Ontology GO:0018024; histone-lysine N-methyltransferase activity GO:0008270zinc ion binding GO:0005634nucleus GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G04050 : homolog of SU(var)3-9 1
RAP-DB (Rice) LOC_Os02g40770.2 : SET domain containing protein, expressed
MaizeGDB (Corn) Zm00025a010564
Brachypodium PNT77552 , PNT77553 , KQK22061
Barley HORVU2Hr1G107560.14 , HORVU2Hr1G107560.16 , HORVU6Hr1G057990.2 , HORVU6Hr1G057990.3 , HORVU6Hr1G057990.6 , HORVU6Hr1G057990.7 , HORVU6Hr1G057990.5 , HORVU2Hr1G107560.20 , HORVU2Hr1G107560.21 , HORVU2Hr1G107560.22 , HORVU2Hr1G107560.19 , HORVU2Hr1G107560.18 , HORVU2Hr1G107560.11 , HORVU2Hr1G107560.10 , HORVU2Hr1G107560.13 , HORVU2Hr1G107560.12 , HORVU2Hr1G107560.15 , HORVU2Hr1G107560.17 , HORVU2Hr1G107560.9 , HORVU2Hr1G107560.8 , HORVU2Hr1G107560.5 , HORVU2Hr1G107560.4 , HORVU2Hr1G107560.6 , HORVU2Hr1G107560.1 , HORVU2Hr1G107560.3 , HORVU2Hr1G107560.2
Wheat TraesCS6B02G255000 , TraesCS2D02G478100 , TraesCS6D02G208400 , TraesCS6A02G226600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G190200 transcription elongation factor SPT5 homolog 1, putative, expressed -
2 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3
3 Sobic.004G043750 - K16251: DNA-directed RNA polymerase V subunit 1
4 Sobic.004G038100 expressed protein K14303: NUP160, nuclear pore complex protein Nup160
5 Sobic.007G159200 PWWP domain containing protein, expressed -
6 Sobic.003G135500 sugar transporter superfamily, putative, expressed -
7 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
8 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
9 Sobic.008G080500 expressed protein -
10 Sobic.002G043000 HEN1, putative, expressed -
11 Sobic.007G047600 expressed protein -
12 Sobic.006G033101 - K14401: CPSF1, cleavage and polyadenylation specificity factor subunit 1
13 Sobic.003G250900 AAA-type ATPase family protein, putative, expressed -
14 Sobic.010G269300 hydrolase, acting on carbon-nitrogen, putative, expressed -
15 Sobic.010G262100 expressed protein -
16 Sobic.002G263700 bromodomain protein 103, putative, expressed -
17 Sobic.003G360300 exostosin family domain containing protein, expressed -
18 Sobic.010G227000 pentatricopeptide, putative, expressed -
19 Sobic.003G177000 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
20 Sobic.007G034200 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein


Gene co-expression network
sample Sobic006G280100 Sobic006G280100 Sobic009G190200 Sobic009G190200 Sobic006G280100--Sobic009G190200 Sobic002G219900 Sobic002G219900 Sobic006G280100--Sobic002G219900 Sobic004G043750 Sobic004G043750 Sobic006G280100--Sobic004G043750 Sobic004G038100 Sobic004G038100 Sobic006G280100--Sobic004G038100 Sobic007G159200 Sobic007G159200 Sobic006G280100--Sobic007G159200 Sobic003G135500 Sobic003G135500 Sobic006G280100--Sobic003G135500 Sobic007G125700 Sobic007G125700 Sobic006G280100--Sobic007G125700 Sobic002G079100 Sobic002G079100 Sobic006G280100--Sobic002G079100 Sobic008G080500 Sobic008G080500 Sobic006G280100--Sobic008G080500 Sobic009G190200--Sobic004G043750 Sobic009G190200--Sobic006G280100 Sobic002G263700 Sobic002G263700 Sobic009G190200--Sobic002G263700 Sobic007G034200 Sobic007G034200 Sobic009G190200--Sobic007G034200 Sobic008G017900 Sobic008G017900 Sobic009G190200--Sobic008G017900 Sobic009G190200--Sobic007G125700 Sobic009G031500 Sobic009G031500 Sobic009G190200--Sobic009G031500 Sobic009G190200--Sobic004G038100 Sobic003G298900 Sobic003G298900 Sobic009G190200--Sobic003G298900 Sobic002G430900 Sobic002G430900 Sobic002G219900--Sobic002G430900 Sobic010G149600 Sobic010G149600 Sobic002G219900--Sobic010G149600 Sobic002G219900--Sobic007G125700 Sobic001G395200 Sobic001G395200 Sobic002G219900--Sobic001G395200 Sobic002G219900--Sobic006G280100 Sobic003G361400 Sobic003G361400 Sobic002G219900--Sobic003G361400 Sobic001G143600 Sobic001G143600 Sobic002G219900--Sobic001G143600 Sobic003G274400 Sobic003G274400 Sobic002G219900--Sobic003G274400 Sobic003G027800 Sobic003G027800 Sobic002G219900--Sobic003G027800 Sobic004G043750--Sobic009G190200 Sobic004G043750--Sobic006G280100 Sobic009G259900 Sobic009G259900 Sobic004G043750--Sobic009G259900 Sobic010G236200 Sobic010G236200 Sobic004G043750--Sobic010G236200 Sobic004G043750--Sobic001G395200 Sobic004G111000 Sobic004G111000 Sobic004G043750--Sobic004G111000 Sobic010G269300 Sobic010G269300 Sobic004G043750--Sobic010G269300 Sobic004G043750--Sobic007G125700 Sobic010G233000 Sobic010G233000 Sobic004G043750--Sobic010G233000 Sobic006G033101 Sobic006G033101 Sobic004G038100--Sobic006G033101 Sobic006G181800 Sobic006G181800 Sobic004G038100--Sobic006G181800 Sobic001G373000 Sobic001G373000 Sobic004G038100--Sobic001G373000 Sobic004G215900 Sobic004G215900 Sobic004G038100--Sobic004G215900 Sobic010G188000 Sobic010G188000 Sobic004G038100--Sobic010G188000 Sobic003G259600 Sobic003G259600 Sobic004G038100--Sobic003G259600 Sobic001G373800 Sobic001G373800 Sobic004G038100--Sobic001G373800 Sobic004G038100--Sobic006G280100 Sobic009G104900 Sobic009G104900 Sobic004G038100--Sobic009G104900 Sobic007G159200--Sobic008G080500 Sobic001G248100 Sobic001G248100 Sobic007G159200--Sobic001G248100 Sobic007G159200--Sobic006G280100 Sobic010G051400 Sobic010G051400 Sobic007G159200--Sobic010G051400 Sobic004G355800 Sobic004G355800 Sobic007G159200--Sobic004G355800 Sobic002G425200 Sobic002G425200 Sobic007G159200--Sobic002G425200 Sobic010G262100 Sobic010G262100 Sobic007G159200--Sobic010G262100 Sobic001G300000 Sobic001G300000 Sobic007G159200--Sobic001G300000 Sobic009G007700 Sobic009G007700 Sobic007G159200--Sobic009G007700 Sobic003G135500--Sobic006G280100 Sobic003G431600 Sobic003G431600 Sobic003G135500--Sobic003G431600 Sobic003G299500 Sobic003G299500 Sobic003G135500--Sobic003G299500 Sobic003G135500--Sobic006G181800 Sobic009G120400 Sobic009G120400 Sobic003G135500--Sobic009G120400 Sobic003G360300 Sobic003G360300 Sobic003G135500--Sobic003G360300 Sobic003G135500--Sobic008G080500 Sobic008G092800 Sobic008G092800 Sobic003G135500--Sobic008G092800 Sobic003G135500--Sobic002G079100 Sobic007G125700--Sobic002G430900 Sobic004G207000 Sobic004G207000 Sobic007G125700--Sobic004G207000 Sobic007G125700--Sobic010G149600 Sobic007G125700--Sobic010G269300 Sobic007G125700--Sobic002G219900 Sobic003G077500 Sobic003G077500 Sobic007G125700--Sobic003G077500 Sobic007G125700--Sobic001G395200 Sobic007G125700--Sobic004G043750 Sobic007G125700--Sobic006G280100 Sobic003G124600 Sobic003G124600 Sobic002G079100--Sobic003G124600 Sobic001G448100 Sobic001G448100 Sobic002G079100--Sobic001G448100 Sobic008G017100 Sobic008G017100 Sobic002G079100--Sobic008G017100 Sobic002G079100--Sobic008G080500 Sobic002G380100 Sobic002G380100 Sobic002G079100--Sobic002G380100 Sobic002G292800 Sobic002G292800 Sobic002G079100--Sobic002G292800 Sobic010G278600 Sobic010G278600 Sobic002G079100--Sobic010G278600 Sobic006G245900 Sobic006G245900 Sobic002G079100--Sobic006G245900 Sobic001G482200 Sobic001G482200 Sobic002G079100--Sobic001G482200 Sobic008G080500--Sobic007G159200 Sobic008G080500--Sobic010G262100 Sobic008G080500--Sobic004G355800 Sobic006G112700 Sobic006G112700 Sobic008G080500--Sobic006G112700 Sobic008G080500--Sobic002G079100 Sobic005G200900 Sobic005G200900 Sobic008G080500--Sobic005G200900 Sobic008G080500--Sobic010G269300 Sobic008G080500--Sobic003G299500 Sobic002G235900 Sobic002G235900 Sobic008G080500--Sobic002G235900
Octagon: transcription factors


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