Gene annotation
Transcriptome id Sobic.003G177000.1
Synonym SDE1, RDR6, Sb03g022880, SGS2
Functional annotation RNA-dependent RNA polymerase, putative, expressed
UniProt C5XM68
Pfam PF05183
Panther DB PTHR23079 PTHR23079:SF1
NCBI CDD -
KEGG Orthology K11699; RDR, RNA-dependent RNA polymerase
Gene Ontology GO:0003968; RNA-directed 5'-3' RNA polymerase activity


Orthologs (automatic annotation)
TAIR AT3G49500 : RNA-dependent RNA polymerase 6
RAP-DB (Rice) LOC_Os01g34350.1 : RNA-dependent RNA polymerase, putative, expressed
MaizeGDB (Corn) Zm00025a024823 , Zm00025a051648
Brachypodium KQK20564 , KQK20560 , KQK20561 , KQK20562 , KQK20563 , KQK20559 , PNT76887 , PNT76889 , PNT76888 , KQK09241
Barley HORVU3Hr1G107690.2 , HORVU3Hr1G107690.3 , HORVU7Hr1G012280.1
Wheat TraesCS3D02G489400 , TraesCS3B02G543300
Populus PNS92354


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G425200 expressed protein -
2 Sobic.008G038200 TKL_IRAK_CR4L.1 - The CR4L subfamily has homology with Crinkly4, expressed -
3 Sobic.001G300000 - -
4 Sobic.001G541000 MYB family transcription factor, putative, expressed K11111: TERF2, telomeric repeat-binding factor 2
5 Sobic.007G161600 SET domain containing protein, expressed -
6 Sobic.006G280100 SET domain containing protein, expressed -
7 Sobic.001G523700 erythronate-4-phosphate dehydrogenase, putative, expressed -
8 Sobic.007G159200 PWWP domain containing protein, expressed -
9 Sobic.008G045000 expressed protein -
10 Sobic.003G104100 expressed protein -
11 Sobic.007G209600 ENT domain containing protein, expressed -
12 Sobic.001G146301 - -
13 Sobic.003G135500 sugar transporter superfamily, putative, expressed -
14 Sobic.001G211500 LIG1 - Putative DNA ligase I, expressed K10747: DNA ligase 1
15 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3
16 Sobic.001G298800 ternary complex factor MIP1, putative, expressed -
17 Sobic.007G128100 expressed protein -
18 Sobic.007G087800 expressed protein K06085: SSX2IP, synovial sarcoma, X breakpoint 2 interacting protein
19 Sobic.007G184100 expressed protein -
20 Sobic.003G027800 protein kinase family protein, putative, expressed -


Gene co-expression network
sample Sobic003G177000 Sobic003G177000 Sobic002G425200 Sobic002G425200 Sobic003G177000--Sobic002G425200 Sobic008G038200 Sobic008G038200 Sobic003G177000--Sobic008G038200 Sobic001G300000 Sobic001G300000 Sobic003G177000--Sobic001G300000 Sobic001G541000 Sobic001G541000 Sobic003G177000--Sobic001G541000 Sobic007G161600 Sobic007G161600 Sobic003G177000--Sobic007G161600 Sobic006G280100 Sobic006G280100 Sobic003G177000--Sobic006G280100 Sobic001G523700 Sobic001G523700 Sobic003G177000--Sobic001G523700 Sobic007G159200 Sobic007G159200 Sobic003G177000--Sobic007G159200 Sobic008G045000 Sobic008G045000 Sobic003G177000--Sobic008G045000 Sobic002G425200--Sobic003G177000 Sobic002G425200--Sobic007G159200 Sobic002G425200--Sobic008G038200 Sobic008G088842 Sobic008G088842 Sobic002G425200--Sobic008G088842 Sobic002G425200--Sobic006G280100 Sobic004G199200 Sobic004G199200 Sobic002G425200--Sobic004G199200 Sobic006G067700 Sobic006G067700 Sobic002G425200--Sobic006G067700 Sobic008G080500 Sobic008G080500 Sobic002G425200--Sobic008G080500 Sobic006G112700 Sobic006G112700 Sobic002G425200--Sobic006G112700 Sobic007G065300 Sobic007G065300 Sobic008G038200--Sobic007G065300 Sobic002G098500 Sobic002G098500 Sobic008G038200--Sobic002G098500 Sobic001G298800 Sobic001G298800 Sobic008G038200--Sobic001G298800 Sobic003G096300 Sobic003G096300 Sobic008G038200--Sobic003G096300 Sobic001G518000 Sobic001G518000 Sobic008G038200--Sobic001G518000 Sobic006G241800 Sobic006G241800 Sobic008G038200--Sobic006G241800 Sobic008G038200--Sobic003G177000 Sobic010G135300 Sobic010G135300 Sobic008G038200--Sobic010G135300 Sobic007G128100 Sobic007G128100 Sobic008G038200--Sobic007G128100 Sobic001G300000--Sobic003G177000 Sobic001G300000--Sobic001G541000 Sobic007G209600 Sobic007G209600 Sobic001G300000--Sobic007G209600 Sobic001G300000--Sobic007G159200 Sobic007G184100 Sobic007G184100 Sobic001G300000--Sobic007G184100 Sobic001G300000--Sobic008G080500 Sobic001G300000--Sobic006G280100 Sobic003G135500 Sobic003G135500 Sobic001G300000--Sobic003G135500 Sobic001G211500 Sobic001G211500 Sobic001G300000--Sobic001G211500 Sobic001G036300 Sobic001G036300 Sobic001G541000--Sobic001G036300 Sobic001G541000--Sobic003G177000 Sobic001G541000--Sobic001G300000 Sobic009G101000 Sobic009G101000 Sobic001G541000--Sobic009G101000 Sobic001G541000--Sobic007G184100 Sobic001G541000--Sobic006G280100 Sobic003G431600 Sobic003G431600 Sobic001G541000--Sobic003G431600 Sobic001G541000--Sobic003G135500 Sobic010G153300 Sobic010G153300 Sobic001G541000--Sobic010G153300 Sobic008G151600 Sobic008G151600 Sobic007G161600--Sobic008G151600 Sobic005G062600 Sobic005G062600 Sobic007G161600--Sobic005G062600 Sobic007G147200 Sobic007G147200 Sobic007G161600--Sobic007G147200 Sobic001G043500 Sobic001G043500 Sobic007G161600--Sobic001G043500 Sobic003G019900 Sobic003G019900 Sobic007G161600--Sobic003G019900 Sobic010G092400 Sobic010G092400 Sobic007G161600--Sobic010G092400 Sobic006G163300 Sobic006G163300 Sobic007G161600--Sobic006G163300 Sobic003G008800 Sobic003G008800 Sobic007G161600--Sobic003G008800 Sobic003G046400 Sobic003G046400 Sobic007G161600--Sobic003G046400 Sobic009G190200 Sobic009G190200 Sobic006G280100--Sobic009G190200 Sobic002G219900 Sobic002G219900 Sobic006G280100--Sobic002G219900 Sobic004G043750 Sobic004G043750 Sobic006G280100--Sobic004G043750 Sobic004G038100 Sobic004G038100 Sobic006G280100--Sobic004G038100 Sobic006G280100--Sobic007G159200 Sobic006G280100--Sobic003G135500 Sobic007G125700 Sobic007G125700 Sobic006G280100--Sobic007G125700 Sobic002G079100 Sobic002G079100 Sobic006G280100--Sobic002G079100 Sobic006G280100--Sobic008G080500 Sobic001G523700--Sobic003G177000 Sobic001G023500 Sobic001G023500 Sobic001G523700--Sobic001G023500 Sobic002G293700 Sobic002G293700 Sobic001G523700--Sobic002G293700 Sobic001G523700--Sobic003G135500 Sobic002G311000 Sobic002G311000 Sobic001G523700--Sobic002G311000 Sobic003G104100 Sobic003G104100 Sobic001G523700--Sobic003G104100 Sobic002G370400 Sobic002G370400 Sobic001G523700--Sobic002G370400 Sobic002G320600 Sobic002G320600 Sobic001G523700--Sobic002G320600 Sobic009G167100 Sobic009G167100 Sobic001G523700--Sobic009G167100 Sobic007G159200--Sobic008G080500 Sobic001G248100 Sobic001G248100 Sobic007G159200--Sobic001G248100 Sobic007G159200--Sobic006G280100 Sobic010G051400 Sobic010G051400 Sobic007G159200--Sobic010G051400 Sobic004G355800 Sobic004G355800 Sobic007G159200--Sobic004G355800 Sobic007G159200--Sobic002G425200 Sobic010G262100 Sobic010G262100 Sobic007G159200--Sobic010G262100 Sobic007G159200--Sobic001G300000 Sobic009G007700 Sobic009G007700 Sobic007G159200--Sobic009G007700 Sobic008G045000--Sobic007G161600 Sobic009G216500 Sobic009G216500 Sobic008G045000--Sobic009G216500 Sobic009G259900 Sobic009G259900 Sobic008G045000--Sobic009G259900 Sobic006G179300 Sobic006G179300 Sobic008G045000--Sobic006G179300 Sobic008G045000--Sobic003G177000 Sobic009G177200 Sobic009G177200 Sobic008G045000--Sobic009G177200 Sobic003G072500 Sobic003G072500 Sobic008G045000--Sobic003G072500 Sobic008G045000--Sobic001G300000 Sobic008G045000--Sobic006G112700
Octagon: transcription factors


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