Gene annotation
Transcriptome id Sobic.002G219900.1
Synonym ATGCP3, GCP3, ATSPC98, Sb02g026120, SPC98
Functional annotation Spc97 / Spc98 family protein, putative, expressed
UniProt A0A1B6QCT4
Pfam PF04130
Panther DB PTHR19302 PTHR19302:SF14
NCBI CDD -
KEGG Orthology K16570; TUBGCP3, gamma-tubulin complex component 3
Gene Ontology GO:0005815; microtubule organizing center GO:0000922spindle pole GO:0000226microtubule cytoskeleton organization GO:0007020microtubule nucleation GO:0005856cytoskeleton


Orthologs (automatic annotation)
TAIR AT5G06680 : spindle pole body component 98
RAP-DB (Rice) LOC_Os09g27370.2 : Spc97 / Spc98 family protein, putative, expressed
MaizeGDB (Corn) Zm00025a047202 , Zm00025a047204 , Zm00025a047203 , Zm00025a016563
Brachypodium KQJ90451 , KQJ90452
Barley HORVU5Hr1G066810.4 , HORVU5Hr1G066810.5 , HORVU5Hr1G066810.6 , HORVU5Hr1G066810.7 , HORVU5Hr1G066810.1 , HORVU5Hr1G066810.2 , HORVU5Hr1G066810.3 , HORVU6Hr1G020090.5 , HORVU6Hr1G020090.4 , HORVU6Hr1G020090.3 , HORVU6Hr1G020090.2
Wheat TraesCS6A02G111800 , TraesCS5B02G230400 , TraesCS6B02G140000 , TraesCS5A02G232100 , TraesCS6D02G100700 , TraesCS5D02G235900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G430900 PWWP domain containing protein, expressed -
2 Sobic.010G149600 intracellular protein transport protein USO1-related, putative, expressed -
3 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
4 Sobic.001G395200 cyclin-related protein, putative, expressed -
5 Sobic.006G280100 SET domain containing protein, expressed -
6 Sobic.003G361400 nsp1-like C-terminal region family protein, expressed K14306: NUP62, nuclear pore complex protein Nup62
7 Sobic.001G143600 pattern formation protein EMB30, putative, expressed K18443: golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1
8 Sobic.003G274400 WD domain, G-beta repeat domain containing protein, expressed K10752: RBBP4, HAT2, CAF1, histone-binding protein RBBP4
9 Sobic.003G027800 protein kinase family protein, putative, expressed -
10 Sobic.003G077500 expressed protein -
11 Sobic.007G209600 ENT domain containing protein, expressed -
12 Sobic.002G043000 HEN1, putative, expressed -
13 Sobic.006G008300 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
14 Sobic.001G385400 guanine nucleotide exchange factor, putative, expressed -
15 Sobic.010G250800 DNA binding protein, putative, expressed -
16 Sobic.010G269300 hydrolase, acting on carbon-nitrogen, putative, expressed -
17 Sobic.007G031300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -
18 Sobic.008G080500 expressed protein -
19 Sobic.003G104100 expressed protein -
20 Sobic.008G169400 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed -


Gene co-expression network
sample Sobic002G219900 Sobic002G219900 Sobic002G430900 Sobic002G430900 Sobic002G219900--Sobic002G430900 Sobic010G149600 Sobic010G149600 Sobic002G219900--Sobic010G149600 Sobic007G125700 Sobic007G125700 Sobic002G219900--Sobic007G125700 Sobic001G395200 Sobic001G395200 Sobic002G219900--Sobic001G395200 Sobic006G280100 Sobic006G280100 Sobic002G219900--Sobic006G280100 Sobic003G361400 Sobic003G361400 Sobic002G219900--Sobic003G361400 Sobic001G143600 Sobic001G143600 Sobic002G219900--Sobic001G143600 Sobic003G274400 Sobic003G274400 Sobic002G219900--Sobic003G274400 Sobic003G027800 Sobic003G027800 Sobic002G219900--Sobic003G027800 Sobic002G430900--Sobic007G125700 Sobic002G430900--Sobic002G219900 Sobic010G269300 Sobic010G269300 Sobic002G430900--Sobic010G269300 Sobic002G430900--Sobic010G149600 Sobic009G192500 Sobic009G192500 Sobic002G430900--Sobic009G192500 Sobic002G017900 Sobic002G017900 Sobic002G430900--Sobic002G017900 Sobic002G430900--Sobic001G395200 Sobic009G006900 Sobic009G006900 Sobic002G430900--Sobic009G006900 Sobic005G120700 Sobic005G120700 Sobic002G430900--Sobic005G120700 Sobic010G149600--Sobic002G219900 Sobic010G149600--Sobic007G125700 Sobic010G149600--Sobic002G430900 Sobic010G149600--Sobic001G395200 Sobic010G149600--Sobic009G006900 Sobic010G236200 Sobic010G236200 Sobic010G149600--Sobic010G236200 Sobic005G032600 Sobic005G032600 Sobic010G149600--Sobic005G032600 Sobic004G207000 Sobic004G207000 Sobic010G149600--Sobic004G207000 Sobic004G043750 Sobic004G043750 Sobic010G149600--Sobic004G043750 Sobic007G125700--Sobic002G430900 Sobic007G125700--Sobic004G207000 Sobic007G125700--Sobic010G149600 Sobic007G125700--Sobic010G269300 Sobic007G125700--Sobic002G219900 Sobic003G077500 Sobic003G077500 Sobic007G125700--Sobic003G077500 Sobic007G125700--Sobic001G395200 Sobic007G125700--Sobic004G043750 Sobic007G125700--Sobic006G280100 Sobic003G104100 Sobic003G104100 Sobic001G395200--Sobic003G104100 Sobic009G259900 Sobic009G259900 Sobic001G395200--Sobic009G259900 Sobic001G395200--Sobic002G219900 Sobic001G395200--Sobic010G149600 Sobic003G351900 Sobic003G351900 Sobic001G395200--Sobic003G351900 Sobic006G008300 Sobic006G008300 Sobic001G395200--Sobic006G008300 Sobic001G395200--Sobic007G125700 Sobic001G395200--Sobic004G043750 Sobic001G079900 Sobic001G079900 Sobic001G395200--Sobic001G079900 Sobic009G190200 Sobic009G190200 Sobic006G280100--Sobic009G190200 Sobic006G280100--Sobic002G219900 Sobic006G280100--Sobic004G043750 Sobic004G038100 Sobic004G038100 Sobic006G280100--Sobic004G038100 Sobic007G159200 Sobic007G159200 Sobic006G280100--Sobic007G159200 Sobic003G135500 Sobic003G135500 Sobic006G280100--Sobic003G135500 Sobic006G280100--Sobic007G125700 Sobic002G079100 Sobic002G079100 Sobic006G280100--Sobic002G079100 Sobic008G080500 Sobic008G080500 Sobic006G280100--Sobic008G080500 Sobic003G259600 Sobic003G259600 Sobic003G361400--Sobic003G259600 Sobic001G373000 Sobic001G373000 Sobic003G361400--Sobic001G373000 Sobic003G361400--Sobic002G219900 Sobic003G361400--Sobic004G038100 Sobic001G013300 Sobic001G013300 Sobic003G361400--Sobic001G013300 Sobic002G043000 Sobic002G043000 Sobic003G361400--Sobic002G043000 Sobic001G033900 Sobic001G033900 Sobic003G361400--Sobic001G033900 Sobic002G372500 Sobic002G372500 Sobic003G361400--Sobic002G372500 Sobic003G360300 Sobic003G360300 Sobic003G361400--Sobic003G360300 Sobic001G385400 Sobic001G385400 Sobic001G143600--Sobic001G385400 Sobic009G049200 Sobic009G049200 Sobic001G143600--Sobic009G049200 Sobic001G143600--Sobic002G219900 Sobic003G250900 Sobic003G250900 Sobic001G143600--Sobic003G250900 Sobic003G435500 Sobic003G435500 Sobic001G143600--Sobic003G435500 Sobic006G242500 Sobic006G242500 Sobic001G143600--Sobic006G242500 Sobic010G065800 Sobic010G065800 Sobic001G143600--Sobic010G065800 Sobic006G236000 Sobic006G236000 Sobic001G143600--Sobic006G236000 Sobic001G507200 Sobic001G507200 Sobic001G143600--Sobic001G507200 Sobic003G274400--Sobic002G219900 Sobic006G245700 Sobic006G245700 Sobic003G274400--Sobic006G245700 Sobic001G436300 Sobic001G436300 Sobic003G274400--Sobic001G436300 Sobic003G274400--Sobic007G125700 Sobic009G031500 Sobic009G031500 Sobic003G274400--Sobic009G031500 Sobic004G129600 Sobic004G129600 Sobic003G274400--Sobic004G129600 Sobic003G274400--Sobic002G430900 Sobic003G274400--Sobic002G017900 Sobic003G274400--Sobic006G280100 Sobic003G027800--Sobic002G219900 Sobic008G169400 Sobic008G169400 Sobic003G027800--Sobic008G169400 Sobic007G128100 Sobic007G128100 Sobic003G027800--Sobic007G128100 Sobic008G038200 Sobic008G038200 Sobic003G027800--Sobic008G038200 Sobic003G027800--Sobic005G032600 Sobic009G167100 Sobic009G167100 Sobic003G027800--Sobic009G167100 Sobic003G027800--Sobic009G031500 Sobic001G113800 Sobic001G113800 Sobic003G027800--Sobic001G113800 Sobic006G179300 Sobic006G179300 Sobic003G027800--Sobic006G179300
Octagon: transcription factors


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