Gene annotation
Transcriptome id Sobic.006G008300.1,Sobic.006G008300.2
Synonym CHB3, ATSWI3D, Sb06g000850
Functional annotation SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed
UniProt A0A1Z5RBG7 , C5YBP1
Pfam PF00569 PF00249 PF04433 PF16495
Panther DB PTHR12802 PTHR12802:SF39
NCBI CDD KOG1279; Chromatin remodeling factor subunit and related transcription factors
KEGG Orthology K11649; SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G34430 : DNA-binding family protein
RAP-DB (Rice) LOC_Os04g01970.1 : SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed
MaizeGDB (Corn) Zm00025a012200
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G395200 cyclin-related protein, putative, expressed -
2 Sobic.010G143600 ATP-binding region, ATPase-like domain containing protein, expressed -
3 Sobic.003G104100 expressed protein -
4 Sobic.003G153900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
5 Sobic.009G216500 expressed protein -
6 Sobic.003G411700 heat shock protein DnaJ, putative, expressed -
7 Sobic.009G105400 OsFBX135 - F-box domain containing protein, expressed -
8 Sobic.003G129500 argonaute, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
9 Sobic.009G207400 ATP binding protein, putative, expressed -
10 Sobic.001G079900 expressed protein -
11 Sobic.008G118100 kelch repeat protein, putative, expressed -
12 Sobic.009G259900 argonaute, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
13 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3
14 Sobic.006G022400 F-box/RNI-like/FBD-like domains-containing protein("PubMedID : 26759170,PubMedID : 24597475")@OsFBD9 - F-box and FBD domain containing protein, expressed -
15 Sobic.009G224300 expressed protein -
16 Sobic.002G021200 expressed protein K19001: HELLS, ATP-dependent DNA helicase
17 Sobic.006G084300 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
18 Sobic.001G211500 LIG1 - Putative DNA ligase I, expressed K10747: DNA ligase 1
19 Sobic.008G169400 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed -
20 Sobic.009G202801 - K10406: kinesin family member C2/C3


Gene co-expression network
sample Sobic006G008300 Sobic006G008300 Sobic001G395200 Sobic001G395200 Sobic006G008300--Sobic001G395200 Sobic010G143600 Sobic010G143600 Sobic006G008300--Sobic010G143600 Sobic003G104100 Sobic003G104100 Sobic006G008300--Sobic003G104100 Sobic003G153900 Sobic003G153900 Sobic006G008300--Sobic003G153900 Sobic009G216500 Sobic009G216500 Sobic006G008300--Sobic009G216500 Sobic003G411700 Sobic003G411700 Sobic006G008300--Sobic003G411700 Sobic009G105400 Sobic009G105400 Sobic006G008300--Sobic009G105400 Sobic003G129500 Sobic003G129500 Sobic006G008300--Sobic003G129500 Sobic009G207400 Sobic009G207400 Sobic006G008300--Sobic009G207400 Sobic001G395200--Sobic003G104100 Sobic009G259900 Sobic009G259900 Sobic001G395200--Sobic009G259900 Sobic002G219900 Sobic002G219900 Sobic001G395200--Sobic002G219900 Sobic010G149600 Sobic010G149600 Sobic001G395200--Sobic010G149600 Sobic003G351900 Sobic003G351900 Sobic001G395200--Sobic003G351900 Sobic001G395200--Sobic006G008300 Sobic007G125700 Sobic007G125700 Sobic001G395200--Sobic007G125700 Sobic004G043750 Sobic004G043750 Sobic001G395200--Sobic004G043750 Sobic001G079900 Sobic001G079900 Sobic001G395200--Sobic001G079900 Sobic005G078700 Sobic005G078700 Sobic010G143600--Sobic005G078700 Sobic002G173400 Sobic002G173400 Sobic010G143600--Sobic002G173400 Sobic003G194800 Sobic003G194800 Sobic010G143600--Sobic003G194800 Sobic009G120400 Sobic009G120400 Sobic010G143600--Sobic009G120400 Sobic003G183466 Sobic003G183466 Sobic010G143600--Sobic003G183466 Sobic003G204100 Sobic003G204100 Sobic010G143600--Sobic003G204100 Sobic010G143600--Sobic006G008300 Sobic003G397100 Sobic003G397100 Sobic010G143600--Sobic003G397100 Sobic003G184666 Sobic003G184666 Sobic010G143600--Sobic003G184666 Sobic003G104100--Sobic001G395200 Sobic008G052300 Sobic008G052300 Sobic003G104100--Sobic008G052300 Sobic005G163400 Sobic005G163400 Sobic003G104100--Sobic005G163400 Sobic001G425700 Sobic001G425700 Sobic003G104100--Sobic001G425700 Sobic006G067700 Sobic006G067700 Sobic003G104100--Sobic006G067700 Sobic010G024500 Sobic010G024500 Sobic003G104100--Sobic010G024500 Sobic004G179800 Sobic004G179800 Sobic003G104100--Sobic004G179800 Sobic006G084300 Sobic006G084300 Sobic003G104100--Sobic006G084300 Sobic003G104100--Sobic009G259900 Sobic003G153900--Sobic003G351900 Sobic008G169400 Sobic008G169400 Sobic003G153900--Sobic008G169400 Sobic002G021200 Sobic002G021200 Sobic003G153900--Sobic002G021200 Sobic006G281900 Sobic006G281900 Sobic003G153900--Sobic006G281900 Sobic003G153900--Sobic001G079900 Sobic002G370400 Sobic002G370400 Sobic003G153900--Sobic002G370400 Sobic001G369800 Sobic001G369800 Sobic003G153900--Sobic001G369800 Sobic009G212100 Sobic009G212100 Sobic003G153900--Sobic009G212100 Sobic003G153900--Sobic006G008300 Sobic006G022400 Sobic006G022400 Sobic009G216500--Sobic006G022400 Sobic004G199200 Sobic004G199200 Sobic009G216500--Sobic004G199200 Sobic004G149400 Sobic004G149400 Sobic009G216500--Sobic004G149400 Sobic009G216500--Sobic006G008300 Sobic008G045000 Sobic008G045000 Sobic009G216500--Sobic008G045000 Sobic006G106200 Sobic006G106200 Sobic009G216500--Sobic006G106200 Sobic004G207000 Sobic004G207000 Sobic009G216500--Sobic004G207000 Sobic004G313500 Sobic004G313500 Sobic009G216500--Sobic004G313500 Sobic005G062600 Sobic005G062600 Sobic009G216500--Sobic005G062600 Sobic010G222800 Sobic010G222800 Sobic003G411700--Sobic010G222800 Sobic004G306100 Sobic004G306100 Sobic003G411700--Sobic004G306100 Sobic002G271400 Sobic002G271400 Sobic003G411700--Sobic002G271400 Sobic010G103500 Sobic010G103500 Sobic003G411700--Sobic010G103500 Sobic001G425200 Sobic001G425200 Sobic003G411700--Sobic001G425200 Sobic003G343200 Sobic003G343200 Sobic003G411700--Sobic003G343200 Sobic001G212600 Sobic001G212600 Sobic003G411700--Sobic001G212600 Sobic010G024000 Sobic010G024000 Sobic003G411700--Sobic010G024000 Sobic005G160200 Sobic005G160200 Sobic003G411700--Sobic005G160200 Sobic006G088820 Sobic006G088820 Sobic009G105400--Sobic006G088820 Sobic001G453500 Sobic001G453500 Sobic009G105400--Sobic001G453500 Sobic009G105400--Sobic006G008300 Sobic002G168000 Sobic002G168000 Sobic009G105400--Sobic002G168000 Sobic009G105400--Sobic004G199200 Sobic001G264201 Sobic001G264201 Sobic009G105400--Sobic001G264201 Sobic009G191500 Sobic009G191500 Sobic009G105400--Sobic009G191500 Sobic009G105400--Sobic010G143600 Sobic008G068100 Sobic008G068100 Sobic009G105400--Sobic008G068100 Sobic005G153000 Sobic005G153000 Sobic003G129500--Sobic005G153000 Sobic002G112000 Sobic002G112000 Sobic003G129500--Sobic002G112000 Sobic003G129500--Sobic002G168000 Sobic009G012400 Sobic009G012400 Sobic003G129500--Sobic009G012400 Sobic010G250400 Sobic010G250400 Sobic003G129500--Sobic010G250400 Sobic003G423800 Sobic003G423800 Sobic003G129500--Sobic003G423800 Sobic003G370300 Sobic003G370300 Sobic003G129500--Sobic003G370300 Sobic003G129500--Sobic010G222800 Sobic003G129500--Sobic003G183466 Sobic009G207400--Sobic005G163400 Sobic009G200000 Sobic009G200000 Sobic009G207400--Sobic009G200000 Sobic008G042200 Sobic008G042200 Sobic009G207400--Sobic008G042200 Sobic005G092700 Sobic005G092700 Sobic009G207400--Sobic005G092700 Sobic009G207400--Sobic010G250400 Sobic001G244900 Sobic001G244900 Sobic009G207400--Sobic001G244900 Sobic003G147500 Sobic003G147500 Sobic009G207400--Sobic003G147500 Sobic009G207400--Sobic003G104100 Sobic009G207400--Sobic008G052300
Octagon: transcription factors


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