Gene annotation
Transcriptome id Sobic.009G105400.1
Synonym Sb09g017120
Functional annotation OsFBX135 - F-box domain containing protein, expressed
UniProt A0A1B6P7P2
Pfam PF00646
Panther DB PTHR32212 PTHR32212:SF75
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G53840 : F-box/RNI-like/FBD-like domains-containing protein
RAP-DB (Rice) LOC_Os04g35940.1 : OsFBX135 - F-box domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.009G105400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G088820 - -
2 Sobic.001G453500 expressed protein -
3 Sobic.006G008300 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
4 Sobic.002G168000 expressed protein -
5 Sobic.004G199200 expressed protein K10858: DNA mismatch repair protein PMS2
6 Sobic.001G264201 - -
7 Sobic.009G191500 pseudouridylate synthase, putative, expressed K06176: truD, tRNA pseudouridine13 synthase
8 Sobic.010G143600 ATP-binding region, ATPase-like domain containing protein, expressed -
9 Sobic.008G068100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tRNA pseudouridine synthase family protein, putative, expressed K06173: truA, tRNA pseudouridine38-40 synthase
10 Sobic.006G140400 DNA mismatch repair protein, putative, expressed -
11 Sobic.005G078700 OsFBX411 - F-box domain containing protein, expressed -
12 Sobic.007G038700 zinc finger, C3HC4 type domain containing protein, expressed K11985: TRAIP, TRAF-interacting protein
13 Sobic.006G281900 down-regulated TF in developmental senescence(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
14 Sobic.008G123200 AAA-type ATPase family protein, putative, expressed -
15 Sobic.001G039300 GTPase of unknown function domain containing protein, putative, expressed -
16 Sobic.009G176300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PPR repeat domain containing protein, putative, expressed -
17 Sobic.005G153000 agenet domain containing protein, expressed -
18 Sobic.009G207400 ATP binding protein, putative, expressed -
19 Sobic.010G175000 expressed protein -
20 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking


Gene co-expression network
sample Sobic009G105400 Sobic009G105400 Sobic006G088820 Sobic006G088820 Sobic009G105400--Sobic006G088820 Sobic001G453500 Sobic001G453500 Sobic009G105400--Sobic001G453500 Sobic006G008300 Sobic006G008300 Sobic009G105400--Sobic006G008300 Sobic002G168000 Sobic002G168000 Sobic009G105400--Sobic002G168000 Sobic004G199200 Sobic004G199200 Sobic009G105400--Sobic004G199200 Sobic001G264201 Sobic001G264201 Sobic009G105400--Sobic001G264201 Sobic009G191500 Sobic009G191500 Sobic009G105400--Sobic009G191500 Sobic010G143600 Sobic010G143600 Sobic009G105400--Sobic010G143600 Sobic008G068100 Sobic008G068100 Sobic009G105400--Sobic008G068100 Sobic006G088820--Sobic009G105400 Sobic006G088820--Sobic010G143600 Sobic006G140400 Sobic006G140400 Sobic006G088820--Sobic006G140400 Sobic008G123200 Sobic008G123200 Sobic006G088820--Sobic008G123200 Sobic005G078700 Sobic005G078700 Sobic006G088820--Sobic005G078700 Sobic003G325900 Sobic003G325900 Sobic006G088820--Sobic003G325900 Sobic006G088820--Sobic001G453500 Sobic003G184666 Sobic003G184666 Sobic006G088820--Sobic003G184666 Sobic002G127900 Sobic002G127900 Sobic006G088820--Sobic002G127900 Sobic006G111200 Sobic006G111200 Sobic001G453500--Sobic006G111200 Sobic001G368300 Sobic001G368300 Sobic001G453500--Sobic001G368300 Sobic004G151000 Sobic004G151000 Sobic001G453500--Sobic004G151000 Sobic001G453500--Sobic006G140400 Sobic004G027400 Sobic004G027400 Sobic001G453500--Sobic004G027400 Sobic004G027300 Sobic004G027300 Sobic001G453500--Sobic004G027300 Sobic001G049800 Sobic001G049800 Sobic001G453500--Sobic001G049800 Sobic002G112600 Sobic002G112600 Sobic001G453500--Sobic002G112600 Sobic001G453500--Sobic009G105400 Sobic001G395200 Sobic001G395200 Sobic006G008300--Sobic001G395200 Sobic006G008300--Sobic010G143600 Sobic003G104100 Sobic003G104100 Sobic006G008300--Sobic003G104100 Sobic003G153900 Sobic003G153900 Sobic006G008300--Sobic003G153900 Sobic009G216500 Sobic009G216500 Sobic006G008300--Sobic009G216500 Sobic003G411700 Sobic003G411700 Sobic006G008300--Sobic003G411700 Sobic006G008300--Sobic009G105400 Sobic003G129500 Sobic003G129500 Sobic006G008300--Sobic003G129500 Sobic009G207400 Sobic009G207400 Sobic006G008300--Sobic009G207400 Sobic007G187700 Sobic007G187700 Sobic002G168000--Sobic007G187700 Sobic005G153000 Sobic005G153000 Sobic002G168000--Sobic005G153000 Sobic002G021200 Sobic002G021200 Sobic002G168000--Sobic002G021200 Sobic006G281900 Sobic006G281900 Sobic002G168000--Sobic006G281900 Sobic006G275500 Sobic006G275500 Sobic002G168000--Sobic006G275500 Sobic009G188900 Sobic009G188900 Sobic002G168000--Sobic009G188900 Sobic009G077300 Sobic009G077300 Sobic002G168000--Sobic009G077300 Sobic006G016700 Sobic006G016700 Sobic002G168000--Sobic006G016700 Sobic001G104500 Sobic001G104500 Sobic002G168000--Sobic001G104500 Sobic004G199200--Sobic009G216500 Sobic009G148200 Sobic009G148200 Sobic004G199200--Sobic009G148200 Sobic004G199200--Sobic009G105400 Sobic006G022400 Sobic006G022400 Sobic004G199200--Sobic006G022400 Sobic004G199200--Sobic001G264201 Sobic004G199200--Sobic003G104100 Sobic004G199200--Sobic001G395200 Sobic010G277200 Sobic010G277200 Sobic004G199200--Sobic010G277200 Sobic010G013500 Sobic010G013500 Sobic004G199200--Sobic010G013500 Sobic001G264201--Sobic006G281900 Sobic001G264201--Sobic009G105400 Sobic001G264201--Sobic004G199200 Sobic010G175000 Sobic010G175000 Sobic001G264201--Sobic010G175000 Sobic002G284400 Sobic002G284400 Sobic001G264201--Sobic002G284400 Sobic006G084300 Sobic006G084300 Sobic001G264201--Sobic006G084300 Sobic002G416150 Sobic002G416150 Sobic001G264201--Sobic002G416150 Sobic008G090000 Sobic008G090000 Sobic001G264201--Sobic008G090000 Sobic006G262501 Sobic006G262501 Sobic001G264201--Sobic006G262501 Sobic009G191500--Sobic008G068100 Sobic004G215900 Sobic004G215900 Sobic009G191500--Sobic004G215900 Sobic001G483800 Sobic001G483800 Sobic009G191500--Sobic001G483800 Sobic005G079201 Sobic005G079201 Sobic009G191500--Sobic005G079201 Sobic005G088900 Sobic005G088900 Sobic009G191500--Sobic005G088900 Sobic002G003300 Sobic002G003300 Sobic009G191500--Sobic002G003300 Sobic010G153300 Sobic010G153300 Sobic009G191500--Sobic010G153300 Sobic007G060600 Sobic007G060600 Sobic009G191500--Sobic007G060600 Sobic003G336500 Sobic003G336500 Sobic009G191500--Sobic003G336500 Sobic010G143600--Sobic005G078700 Sobic002G173400 Sobic002G173400 Sobic010G143600--Sobic002G173400 Sobic003G194800 Sobic003G194800 Sobic010G143600--Sobic003G194800 Sobic009G120400 Sobic009G120400 Sobic010G143600--Sobic009G120400 Sobic003G183466 Sobic003G183466 Sobic010G143600--Sobic003G183466 Sobic003G204100 Sobic003G204100 Sobic010G143600--Sobic003G204100 Sobic010G143600--Sobic006G008300 Sobic003G397100 Sobic003G397100 Sobic010G143600--Sobic003G397100 Sobic010G143600--Sobic003G184666 Sobic008G068100--Sobic009G191500 Sobic008G068100--Sobic004G215900 Sobic008G068100--Sobic005G079201 Sobic006G236000 Sobic006G236000 Sobic008G068100--Sobic006G236000 Sobic008G068100--Sobic002G003300 Sobic008G068100--Sobic001G483800 Sobic008G068100--Sobic005G088900 Sobic008G068100--Sobic003G336500 Sobic001G024000 Sobic001G024000 Sobic008G068100--Sobic001G024000
Octagon: transcription factors


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