Gene annotation
Transcriptome id Sobic.004G199200.5,Sobic.004G199200.2,Sobic.004G199200.3,Sobic.004G199200.4
Synonym Sb04g024570, PMS1
Functional annotation expressed protein
UniProt A0A194YQM4 , A0A194YQR1
Pfam PF13589 PF01119 PF08676
Panther DB PTHR10073 PTHR10073:SF12
NCBI CDD KOG1978; DNA mismatch repair protein - MLH2/PMS1/Pms2 family
KEGG Orthology K10858; DNA mismatch repair protein PMS2
Gene Ontology GO:0006298; mismatch repair GO:0005524ATP binding


Orthologs (automatic annotation)
TAIR AT4G02460 : DNA mismatch repair protein, putative
RAP-DB (Rice) LOC_Os02g37920.1 : expressed protein
MaizeGDB (Corn) Zm00025a031805 , Zm00025a039082
Brachypodium KQK00128 , KQK00129
Barley -
Wheat TraesCS6B02G235900 , TraesCS6B02G235900 , TraesCS6D02G190900 , TraesCS6D02G190900 , TraesCS6A02G205700 , TraesCS6A02G205700 , TraesCS6A02G205700 , TraesCS6A02G205700
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G216500 expressed protein -
2 Sobic.009G148200 deoxynucleoside kinase family, putative, expressed -
3 Sobic.009G105400 OsFBX135 - F-box domain containing protein, expressed -
4 Sobic.006G022400 F-box/RNI-like/FBD-like domains-containing protein("PubMedID : 26759170,PubMedID : 24597475")@OsFBD9 - F-box and FBD domain containing protein, expressed -
5 Sobic.001G264201 - -
6 Sobic.003G104100 expressed protein -
7 Sobic.001G395200 cyclin-related protein, putative, expressed -
8 Sobic.010G277200 zinc knuckle domain containing protein, expressed K10904: TIMELESS-interacting protein
9 Sobic.010G013500 growth-regulating factor, putative, expressed -
10 Sobic.006G008300 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C member, putative, expressed K11649: SWI/SNF related-matrix-associated actin-dependent regulator of chromatin subfamily C
11 Sobic.009G259900 argonaute, putative, expressed K11593: ELF2C, eukaryotic translation initiation factor 2C
12 Sobic.001G453500 expressed protein -
13 Sobic.008G169400 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed -
14 Sobic.001G079900 expressed protein -
15 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
16 Sobic.006G067700 "protein kinase (like ACGVIII kinase called KIPK, a KCBP-interacting protein kinase)"(PubMedID : 28676627)@AGC_PVPK_like_kin82y.19 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
17 Sobic.002G425200 expressed protein -
18 Sobic.006G274100 ribosome biogenesis regulatory protein, putative, expressed K14852: regulator of ribosome biosynthesis
19 Sobic.007G199600 MBTB32 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
20 Sobic.007G031300 endonuclease/exonuclease/phosphatase family domain containing protein, expressed -


Gene co-expression network
sample Sobic004G199200 Sobic004G199200 Sobic009G216500 Sobic009G216500 Sobic004G199200--Sobic009G216500 Sobic009G148200 Sobic009G148200 Sobic004G199200--Sobic009G148200 Sobic009G105400 Sobic009G105400 Sobic004G199200--Sobic009G105400 Sobic006G022400 Sobic006G022400 Sobic004G199200--Sobic006G022400 Sobic001G264201 Sobic001G264201 Sobic004G199200--Sobic001G264201 Sobic003G104100 Sobic003G104100 Sobic004G199200--Sobic003G104100 Sobic001G395200 Sobic001G395200 Sobic004G199200--Sobic001G395200 Sobic010G277200 Sobic010G277200 Sobic004G199200--Sobic010G277200 Sobic010G013500 Sobic010G013500 Sobic004G199200--Sobic010G013500 Sobic009G216500--Sobic006G022400 Sobic009G216500--Sobic004G199200 Sobic004G149400 Sobic004G149400 Sobic009G216500--Sobic004G149400 Sobic006G008300 Sobic006G008300 Sobic009G216500--Sobic006G008300 Sobic008G045000 Sobic008G045000 Sobic009G216500--Sobic008G045000 Sobic006G106200 Sobic006G106200 Sobic009G216500--Sobic006G106200 Sobic004G207000 Sobic004G207000 Sobic009G216500--Sobic004G207000 Sobic004G313500 Sobic004G313500 Sobic009G216500--Sobic004G313500 Sobic005G062600 Sobic005G062600 Sobic009G216500--Sobic005G062600 Sobic006G067700 Sobic006G067700 Sobic009G148200--Sobic006G067700 Sobic009G148200--Sobic003G104100 Sobic010G050700 Sobic010G050700 Sobic009G148200--Sobic010G050700 Sobic009G148200--Sobic004G199200 Sobic009G148200--Sobic010G277200 Sobic001G453500 Sobic001G453500 Sobic009G148200--Sobic001G453500 Sobic002G216600 Sobic002G216600 Sobic009G148200--Sobic002G216600 Sobic009G066400 Sobic009G066400 Sobic009G148200--Sobic009G066400 Sobic001G368300 Sobic001G368300 Sobic009G148200--Sobic001G368300 Sobic006G088820 Sobic006G088820 Sobic009G105400--Sobic006G088820 Sobic009G105400--Sobic001G453500 Sobic009G105400--Sobic006G008300 Sobic002G168000 Sobic002G168000 Sobic009G105400--Sobic002G168000 Sobic009G105400--Sobic004G199200 Sobic009G105400--Sobic001G264201 Sobic009G191500 Sobic009G191500 Sobic009G105400--Sobic009G191500 Sobic010G143600 Sobic010G143600 Sobic009G105400--Sobic010G143600 Sobic008G068100 Sobic008G068100 Sobic009G105400--Sobic008G068100 Sobic006G022400--Sobic004G207000 Sobic001G079900 Sobic001G079900 Sobic006G022400--Sobic001G079900 Sobic006G022400--Sobic009G216500 Sobic005G177900 Sobic005G177900 Sobic006G022400--Sobic005G177900 Sobic006G022400--Sobic001G395200 Sobic003G351900 Sobic003G351900 Sobic006G022400--Sobic003G351900 Sobic006G022500 Sobic006G022500 Sobic006G022400--Sobic006G022500 Sobic008G169400 Sobic008G169400 Sobic006G022400--Sobic008G169400 Sobic005G032600 Sobic005G032600 Sobic006G022400--Sobic005G032600 Sobic006G281900 Sobic006G281900 Sobic001G264201--Sobic006G281900 Sobic001G264201--Sobic009G105400 Sobic001G264201--Sobic004G199200 Sobic010G175000 Sobic010G175000 Sobic001G264201--Sobic010G175000 Sobic002G284400 Sobic002G284400 Sobic001G264201--Sobic002G284400 Sobic006G084300 Sobic006G084300 Sobic001G264201--Sobic006G084300 Sobic002G416150 Sobic002G416150 Sobic001G264201--Sobic002G416150 Sobic008G090000 Sobic008G090000 Sobic001G264201--Sobic008G090000 Sobic006G262501 Sobic006G262501 Sobic001G264201--Sobic006G262501 Sobic003G104100--Sobic001G395200 Sobic008G052300 Sobic008G052300 Sobic003G104100--Sobic008G052300 Sobic005G163400 Sobic005G163400 Sobic003G104100--Sobic005G163400 Sobic001G425700 Sobic001G425700 Sobic003G104100--Sobic001G425700 Sobic003G104100--Sobic006G067700 Sobic010G024500 Sobic010G024500 Sobic003G104100--Sobic010G024500 Sobic004G179800 Sobic004G179800 Sobic003G104100--Sobic004G179800 Sobic003G104100--Sobic006G084300 Sobic009G259900 Sobic009G259900 Sobic003G104100--Sobic009G259900 Sobic001G395200--Sobic003G104100 Sobic001G395200--Sobic009G259900 Sobic002G219900 Sobic002G219900 Sobic001G395200--Sobic002G219900 Sobic010G149600 Sobic010G149600 Sobic001G395200--Sobic010G149600 Sobic001G395200--Sobic003G351900 Sobic001G395200--Sobic006G008300 Sobic007G125700 Sobic007G125700 Sobic001G395200--Sobic007G125700 Sobic004G043750 Sobic004G043750 Sobic001G395200--Sobic004G043750 Sobic001G395200--Sobic001G079900 Sobic007G038700 Sobic007G038700 Sobic010G277200--Sobic007G038700 Sobic003G153900 Sobic003G153900 Sobic010G277200--Sobic003G153900 Sobic010G277200--Sobic009G148200 Sobic010G277200--Sobic004G199200 Sobic001G408300 Sobic001G408300 Sobic010G277200--Sobic001G408300 Sobic010G277200--Sobic008G169400 Sobic007G031300 Sobic007G031300 Sobic010G277200--Sobic007G031300 Sobic006G109400 Sobic006G109400 Sobic010G277200--Sobic006G109400 Sobic010G277200--Sobic003G351900 Sobic009G000600 Sobic009G000600 Sobic010G013500--Sobic009G000600 Sobic010G013500--Sobic004G199200 Sobic010G013500--Sobic006G022400 Sobic002G223300 Sobic002G223300 Sobic010G013500--Sobic002G223300 Sobic010G013500--Sobic002G284400 Sobic001G290500 Sobic001G290500 Sobic010G013500--Sobic001G290500 Sobic001G372900 Sobic001G372900 Sobic010G013500--Sobic001G372900 Sobic010G013500--Sobic006G281900 Sobic005G120600 Sobic005G120600 Sobic010G013500--Sobic005G120600
Octagon: transcription factors


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