Gene annotation
Transcriptome id Sobic.009G148200.1
Synonym Sb09g021270
Functional annotation deoxynucleoside kinase family, putative, expressed
UniProt A0A1Z5R3G2
Pfam PF01712
Panther DB PTHR10513 PTHR10513:SF24
NCBI CDD KOG4235; Mitochondrial thymidine kinase 2/deoxyguanosine kinase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G72040 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os05g35520.1 : deoxynucleoside kinase family, putative, expressed
MaizeGDB (Corn) Zm00025a037327
Brachypodium KQK06098 , KQK06099
Barley -
Wheat TraesCS1D02G269100 , TraesCS1B02G279500 , TraesCS1A02G269000
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G067700 "protein kinase (like ACGVIII kinase called KIPK, a KCBP-interacting protein kinase)"(PubMedID : 28676627)@AGC_PVPK_like_kin82y.19 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
2 Sobic.003G104100 expressed protein -
3 Sobic.010G050700 protein kinase, putative, expressed -
4 Sobic.004G199200 expressed protein K10858: DNA mismatch repair protein PMS2
5 Sobic.010G277200 zinc knuckle domain containing protein, expressed K10904: TIMELESS-interacting protein
6 Sobic.001G453500 expressed protein -
7 Sobic.002G216600 "DEP1(Ortholog in rice:Huang et al., 2009(PubMedID : 31659854)@keratin-associated protein 5-4, putative, expressed -
8 Sobic.009G066400 MAR-binding filament-like protein 1, putative, expressed -
9 Sobic.001G368300 seven in absentia protein family domain containing protein, expressed K04506: E3 ubiquitin-protein ligase SIAH1
10 Sobic.001G047200 carboxyl-terminal peptidase, putative, expressed -
11 Sobic.006G111200 RNA-dependent RNA polymerase, putative, expressed K11699: RDR, RNA-dependent RNA polymerase
12 Sobic.004G144100 - -
13 Sobic.002G380100 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
14 Sobic.010G065800 ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed K11855: ubiquitin carboxyl-terminal hydrolase 36/42
15 Sobic.003G336500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@KH domain containing protein, putative, expressed K14945: protein quaking
16 Sobic.001G395200 cyclin-related protein, putative, expressed -
17 Sobic.007G060600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@PolI-like DNA polymerase, putative, expressed K02335: DNA polymerase I
18 Sobic.008G101900 plastid division regulator MinE, putative, expressed -
19 Sobic.008G048966 - -
20 Sobic.008G100400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"SMK1(Ortholog in maize:Li et al., 2014)"(PubMedID : 31659912)@tetratricopeptide-like helical, putative, expressed -


Gene co-expression network
sample Sobic009G148200 Sobic009G148200 Sobic006G067700 Sobic006G067700 Sobic009G148200--Sobic006G067700 Sobic003G104100 Sobic003G104100 Sobic009G148200--Sobic003G104100 Sobic010G050700 Sobic010G050700 Sobic009G148200--Sobic010G050700 Sobic004G199200 Sobic004G199200 Sobic009G148200--Sobic004G199200 Sobic010G277200 Sobic010G277200 Sobic009G148200--Sobic010G277200 Sobic001G453500 Sobic001G453500 Sobic009G148200--Sobic001G453500 Sobic002G216600 Sobic002G216600 Sobic009G148200--Sobic002G216600 Sobic009G066400 Sobic009G066400 Sobic009G148200--Sobic009G066400 Sobic001G368300 Sobic001G368300 Sobic009G148200--Sobic001G368300 Sobic006G067700--Sobic003G104100 Sobic006G067700--Sobic009G148200 Sobic001G395200 Sobic001G395200 Sobic006G067700--Sobic001G395200 Sobic010G065800 Sobic010G065800 Sobic006G067700--Sobic010G065800 Sobic001G217100 Sobic001G217100 Sobic006G067700--Sobic001G217100 Sobic003G323300 Sobic003G323300 Sobic006G067700--Sobic003G323300 Sobic002G098500 Sobic002G098500 Sobic006G067700--Sobic002G098500 Sobic006G262100 Sobic006G262100 Sobic006G067700--Sobic006G262100 Sobic008G136100 Sobic008G136100 Sobic006G067700--Sobic008G136100 Sobic003G104100--Sobic001G395200 Sobic008G052300 Sobic008G052300 Sobic003G104100--Sobic008G052300 Sobic005G163400 Sobic005G163400 Sobic003G104100--Sobic005G163400 Sobic001G425700 Sobic001G425700 Sobic003G104100--Sobic001G425700 Sobic003G104100--Sobic006G067700 Sobic010G024500 Sobic010G024500 Sobic003G104100--Sobic010G024500 Sobic004G179800 Sobic004G179800 Sobic003G104100--Sobic004G179800 Sobic006G084300 Sobic006G084300 Sobic003G104100--Sobic006G084300 Sobic009G259900 Sobic009G259900 Sobic003G104100--Sobic009G259900 Sobic006G056000 Sobic006G056000 Sobic010G050700--Sobic006G056000 Sobic010G050700--Sobic009G148200 Sobic002G380100 Sobic002G380100 Sobic010G050700--Sobic002G380100 Sobic010G050700--Sobic006G067700 Sobic001G367100 Sobic001G367100 Sobic010G050700--Sobic001G367100 Sobic002G010800 Sobic002G010800 Sobic010G050700--Sobic002G010800 Sobic002G192500 Sobic002G192500 Sobic010G050700--Sobic002G192500 Sobic004G227500 Sobic004G227500 Sobic010G050700--Sobic004G227500 Sobic002G334600 Sobic002G334600 Sobic010G050700--Sobic002G334600 Sobic009G216500 Sobic009G216500 Sobic004G199200--Sobic009G216500 Sobic004G199200--Sobic009G148200 Sobic009G105400 Sobic009G105400 Sobic004G199200--Sobic009G105400 Sobic006G022400 Sobic006G022400 Sobic004G199200--Sobic006G022400 Sobic001G264201 Sobic001G264201 Sobic004G199200--Sobic001G264201 Sobic004G199200--Sobic003G104100 Sobic004G199200--Sobic001G395200 Sobic004G199200--Sobic010G277200 Sobic010G013500 Sobic010G013500 Sobic004G199200--Sobic010G013500 Sobic007G038700 Sobic007G038700 Sobic010G277200--Sobic007G038700 Sobic003G153900 Sobic003G153900 Sobic010G277200--Sobic003G153900 Sobic010G277200--Sobic009G148200 Sobic010G277200--Sobic004G199200 Sobic001G408300 Sobic001G408300 Sobic010G277200--Sobic001G408300 Sobic008G169400 Sobic008G169400 Sobic010G277200--Sobic008G169400 Sobic007G031300 Sobic007G031300 Sobic010G277200--Sobic007G031300 Sobic006G109400 Sobic006G109400 Sobic010G277200--Sobic006G109400 Sobic003G351900 Sobic003G351900 Sobic010G277200--Sobic003G351900 Sobic006G111200 Sobic006G111200 Sobic001G453500--Sobic006G111200 Sobic001G453500--Sobic001G368300 Sobic004G151000 Sobic004G151000 Sobic001G453500--Sobic004G151000 Sobic006G140400 Sobic006G140400 Sobic001G453500--Sobic006G140400 Sobic004G027400 Sobic004G027400 Sobic001G453500--Sobic004G027400 Sobic004G027300 Sobic004G027300 Sobic001G453500--Sobic004G027300 Sobic001G049800 Sobic001G049800 Sobic001G453500--Sobic001G049800 Sobic002G112600 Sobic002G112600 Sobic001G453500--Sobic002G112600 Sobic001G453500--Sobic009G105400 Sobic005G204100 Sobic005G204100 Sobic002G216600--Sobic005G204100 Sobic001G384700 Sobic001G384700 Sobic002G216600--Sobic001G384700 Sobic004G144100 Sobic004G144100 Sobic002G216600--Sobic004G144100 Sobic009G259500 Sobic009G259500 Sobic002G216600--Sobic009G259500 Sobic004G199700 Sobic004G199700 Sobic002G216600--Sobic004G199700 Sobic001G079900 Sobic001G079900 Sobic002G216600--Sobic001G079900 Sobic009G141700 Sobic009G141700 Sobic002G216600--Sobic009G141700 Sobic003G174900 Sobic003G174900 Sobic002G216600--Sobic003G174900 Sobic002G348700 Sobic002G348700 Sobic002G216600--Sobic002G348700 Sobic007G014800 Sobic007G014800 Sobic009G066400--Sobic007G014800 Sobic009G142000 Sobic009G142000 Sobic009G066400--Sobic009G142000 Sobic005G143300 Sobic005G143300 Sobic009G066400--Sobic005G143300 Sobic009G066400--Sobic009G148200 Sobic009G066400--Sobic001G367100 Sobic009G066400--Sobic001G453500 Sobic006G274100 Sobic006G274100 Sobic009G066400--Sobic006G274100 Sobic001G245900 Sobic001G245900 Sobic009G066400--Sobic001G245900 Sobic010G224700 Sobic010G224700 Sobic009G066400--Sobic010G224700 Sobic001G368300--Sobic006G111200 Sobic001G368300--Sobic001G453500 Sobic007G060600 Sobic007G060600 Sobic001G368300--Sobic007G060600 Sobic001G368300--Sobic004G027300 Sobic001G040600 Sobic001G040600 Sobic001G368300--Sobic001G040600 Sobic007G059700 Sobic007G059700 Sobic001G368300--Sobic007G059700 Sobic001G368300--Sobic009G148200 Sobic006G273900 Sobic006G273900 Sobic001G368300--Sobic006G273900 Sobic003G436600 Sobic003G436600 Sobic001G368300--Sobic003G436600
Octagon: transcription factors


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