Gene annotation
Transcriptome id Sobic.002G216600.2,Sobic.002G216600.1
Synonym Sb02g025860
Functional annotation "DEP1(Ortholog in rice:Huang et al., 2009 (PubMedID : 31659854)
keratin-associated protein 5-4, putative, expressed
UniProt A0A1W0W5A7 , C5XDQ6
Pfam PF00631
Panther DB PTHR32378 PTHR32378:SF9
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0007186; G protein-coupled receptor signaling pathway GO:0005834heterotrimeric G-protein complex GO:0004871obsolete signal transducer activity


Orthologs (automatic annotation)
TAIR AT5G20635 : -
RAP-DB (Rice) LOC_Os09g26999.1 : keratin-associated protein 5-4, putative, expressed
MaizeGDB (Corn) Zm00025a047156 , Zm00025a005754 , Zm00025a014012
Brachypodium -
Barley HORVU3Hr1G051800.7 , HORVU3Hr1G051800.6 , HORVU3Hr1G051800.5 , HORVU3Hr1G051800.3 , HORVU3Hr1G051800.2 , HORVU3Hr1G051800.9 , HORVU5Hr1G061840.1 , HORVU5Hr1G061840.6 , HORVU5Hr1G061840.5
Wheat TraesCS5A02G215100 , TraesCS5D02G216900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G204100 kelch repeat protein, putative, expressed -
2 Sobic.001G384700 RNA-binding zinc finger protein, putative, expressed -
3 Sobic.004G144100 - -
4 Sobic.009G259500 receptor protein kinase CLAVATA1 precursor, putative, expressed -
5 Sobic.004G199700 expressed protein -
6 Sobic.001G079900 expressed protein -
7 Sobic.009G141700 expressed protein -
8 Sobic.003G174900 fimbrin-like protein 2, putative, expressed K17336: plastin-3
9 Sobic.002G348700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carboxyl-terminal peptidase, putative, expressed -
10 Sobic.007G142900 receptor-like kinase, putative, expressed -
11 Sobic.002G098500 H-BTB6 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
12 Sobic.004G052800 DUF640 domain containing protein, putative, expressed -
13 Sobic.009G124800 zinc finger, C3HC4 type domain containing protein, expressed -
14 Sobic.006G272500 "PKc_like super family, protein kjinases, catalytic domain"(PubMedID : 29491869)@expressed protein -
15 Sobic.003G096300 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
16 Sobic.008G001300 senescence-induced receptor-like serine/threonine-protein kinase precursor, putative, expressed -
17 Sobic.006G046600 expressed protein -
18 Sobic.002G002100 expressed protein -
19 Sobic.001G019200 H-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
20 Sobic.001G494100 expressed protein K10875: RAD54L, DNA repair and recombination protein RAD54 and RAD54-like protein


Gene co-expression network
sample Sobic002G216600 Sobic002G216600 Sobic005G204100 Sobic005G204100 Sobic002G216600--Sobic005G204100 Sobic001G384700 Sobic001G384700 Sobic002G216600--Sobic001G384700 Sobic004G144100 Sobic004G144100 Sobic002G216600--Sobic004G144100 Sobic009G259500 Sobic009G259500 Sobic002G216600--Sobic009G259500 Sobic004G199700 Sobic004G199700 Sobic002G216600--Sobic004G199700 Sobic001G079900 Sobic001G079900 Sobic002G216600--Sobic001G079900 Sobic009G141700 Sobic009G141700 Sobic002G216600--Sobic009G141700 Sobic003G174900 Sobic003G174900 Sobic002G216600--Sobic003G174900 Sobic002G348700 Sobic002G348700 Sobic002G216600--Sobic002G348700 Sobic005G204100--Sobic002G216600 Sobic005G204100--Sobic009G259500 Sobic002G072700 Sobic002G072700 Sobic005G204100--Sobic002G072700 Sobic007G142900 Sobic007G142900 Sobic005G204100--Sobic007G142900 Sobic002G098500 Sobic002G098500 Sobic005G204100--Sobic002G098500 Sobic001G221900 Sobic001G221900 Sobic005G204100--Sobic001G221900 Sobic005G204100--Sobic001G384700 Sobic006G272500 Sobic006G272500 Sobic005G204100--Sobic006G272500 Sobic007G189400 Sobic007G189400 Sobic005G204100--Sobic007G189400 Sobic001G384700--Sobic002G216600 Sobic001G384700--Sobic001G079900 Sobic001G384700--Sobic009G141700 Sobic006G046600 Sobic006G046600 Sobic001G384700--Sobic006G046600 Sobic001G384700--Sobic005G204100 Sobic004G052800 Sobic004G052800 Sobic001G384700--Sobic004G052800 Sobic005G168400 Sobic005G168400 Sobic001G384700--Sobic005G168400 Sobic001G379900 Sobic001G379900 Sobic001G384700--Sobic001G379900 Sobic001G434100 Sobic001G434100 Sobic001G384700--Sobic001G434100 Sobic004G144100--Sobic002G216600 Sobic009G200000 Sobic009G200000 Sobic004G144100--Sobic009G200000 Sobic006G262100 Sobic006G262100 Sobic004G144100--Sobic006G262100 Sobic001G395200 Sobic001G395200 Sobic004G144100--Sobic001G395200 Sobic008G048966 Sobic008G048966 Sobic004G144100--Sobic008G048966 Sobic006G201600 Sobic006G201600 Sobic004G144100--Sobic006G201600 Sobic008G001300 Sobic008G001300 Sobic004G144100--Sobic008G001300 Sobic004G144100--Sobic007G142900 Sobic002G002100 Sobic002G002100 Sobic004G144100--Sobic002G002100 Sobic009G259500--Sobic005G204100 Sobic009G259500--Sobic002G216600 Sobic004G154600 Sobic004G154600 Sobic009G259500--Sobic004G154600 Sobic009G259500--Sobic002G072700 Sobic009G259500--Sobic004G199700 Sobic009G259500--Sobic007G142900 Sobic001G258100 Sobic001G258100 Sobic009G259500--Sobic001G258100 Sobic009G259500--Sobic003G174900 Sobic003G300200 Sobic003G300200 Sobic009G259500--Sobic003G300200 Sobic004G199700--Sobic009G259500 Sobic004G199700--Sobic002G216600 Sobic004G199700--Sobic003G174900 Sobic001G361800 Sobic001G361800 Sobic004G199700--Sobic001G361800 Sobic004G199700--Sobic002G348700 Sobic004G199700--Sobic002G072700 Sobic004G199700--Sobic005G204100 Sobic007G210900 Sobic007G210900 Sobic004G199700--Sobic007G210900 Sobic004G199700--Sobic004G154600 Sobic005G032600 Sobic005G032600 Sobic001G079900--Sobic005G032600 Sobic001G079900--Sobic001G384700 Sobic005G062600 Sobic005G062600 Sobic001G079900--Sobic005G062600 Sobic002G050700 Sobic002G050700 Sobic001G079900--Sobic002G050700 Sobic003G351900 Sobic003G351900 Sobic001G079900--Sobic003G351900 Sobic001G493900 Sobic001G493900 Sobic001G079900--Sobic001G493900 Sobic008G151600 Sobic008G151600 Sobic001G079900--Sobic008G151600 Sobic002G027600 Sobic002G027600 Sobic001G079900--Sobic002G027600 Sobic001G079900--Sobic009G141700 Sobic009G141700--Sobic001G079900 Sobic009G141700--Sobic001G384700 Sobic009G141700--Sobic002G216600 Sobic008G169400 Sobic008G169400 Sobic009G141700--Sobic008G169400 Sobic003G323300 Sobic003G323300 Sobic009G141700--Sobic003G323300 Sobic009G141700--Sobic006G046600 Sobic009G141700--Sobic005G062600 Sobic006G067700 Sobic006G067700 Sobic009G141700--Sobic006G067700 Sobic006G022400 Sobic006G022400 Sobic009G141700--Sobic006G022400 Sobic003G174900--Sobic004G199700 Sobic003G174900--Sobic002G216600 Sobic003G174900--Sobic009G259500 Sobic003G174900--Sobic001G361800 Sobic003G174900--Sobic001G258100 Sobic003G174900--Sobic005G204100 Sobic003G174900--Sobic002G348700 Sobic008G086200 Sobic008G086200 Sobic003G174900--Sobic008G086200 Sobic004G205500 Sobic004G205500 Sobic003G174900--Sobic004G205500 Sobic002G348700--Sobic002G216600 Sobic002G348700--Sobic004G199700 Sobic002G348700--Sobic003G174900 Sobic002G348700--Sobic007G210900 Sobic002G348700--Sobic004G205500 Sobic003G420800 Sobic003G420800 Sobic002G348700--Sobic003G420800 Sobic002G348700--Sobic009G259500 Sobic006G167300 Sobic006G167300 Sobic002G348700--Sobic006G167300 Sobic009G164900 Sobic009G164900 Sobic002G348700--Sobic009G164900
Octagon: transcription factors


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