Gene annotation
Transcriptome id Sobic.001G384700.1,Sobic.001G384700.2
Synonym Sb01g036490
Functional annotation RNA-binding zinc finger protein, putative, expressed
UniProt A0A1B6QNG2 , C5X1P1
Pfam PF00642 PF00076
Panther DB PTHR24009 PTHR24009:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G51950 : Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
RAP-DB (Rice) LOC_Os03g21140.1 : RNA-binding zinc finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a036852 , Zm00025a033343 , Zm00025a049183 , Zm00025a002302 , Zm00025a052452 , Zm00025a027712
Brachypodium KQK21862 , KQK21863 , KQK14595 , PNT74552 , PNT77483
Barley HORVU2Hr1G017490.9 , HORVU2Hr1G017490.8 , HORVU2Hr1G017490.7 , HORVU2Hr1G017490.6 , HORVU2Hr1G017490.5 , HORVU2Hr1G017490.4 , HORVU2Hr1G017490.3 , HORVU2Hr1G017490.2 , HORVU2Hr1G017490.17 , HORVU2Hr1G017490.16 , HORVU2Hr1G017490.14 , HORVU2Hr1G017490.13 , HORVU2Hr1G017490.12 , HORVU2Hr1G017490.11 , HORVU2Hr1G017490.10 , HORVU5Hr1G045860.6 , HORVU5Hr1G045860.7 , HORVU5Hr1G045860.4 , HORVU5Hr1G045860.5 , HORVU5Hr1G045860.2 , HORVU5Hr1G045860.3 , HORVU5Hr1G045860.1 , HORVU5Hr1G045860.8 , HORVU2Hr1G017490.15
Wheat TraesCS2D02G101800 , TraesCS2D02G101800 , TraesCS2D02G101800 , TraesCS2D02G101800 , TraesCS2D02G101800 , TraesCS5B02G142300 , TraesCS5B02G142300 , TraesCS5B02G142300 , TraesCS5B02G142300 , TraesCS4A02G190800 , TraesCS2A02G102300 , TraesCS4A02G190800 , TraesCS2A02G102300 , TraesCS5D02G148600 , TraesCS5D02G148600 , TraesCS5A02G143400 , TraesCS5A02G143400 , TraesCS5A02G143400 , TraesCS2B02G119400 , TraesCS2B02G119400 , TraesCS2B02G119400 , TraesCS2B02G119400 , TraesCS4B02G124600 , TraesCS2A02G102300 , TraesCS2A02G102300 , TraesCS4B02G124600
Populus -


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cDNA sequences
Sobic.001G384700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G216600 "DEP1(Ortholog in rice:Huang et al., 2009(PubMedID : 31659854)@keratin-associated protein 5-4, putative, expressed -
2 Sobic.001G079900 expressed protein -
3 Sobic.009G141700 expressed protein -
4 Sobic.006G046600 expressed protein -
5 Sobic.005G204100 kelch repeat protein, putative, expressed -
6 Sobic.004G052800 DUF640 domain containing protein, putative, expressed -
7 Sobic.005G168400 expressed protein -
8 Sobic.001G379900 potassium transporter, putative, expressed K03549: KUP system potassium uptake protein
9 Sobic.001G434100 NB-ARC/LRR disease resistance protein, putative, expressed K13459: disease resistance protein RPS2
10 Sobic.002G050700 tesmin/TSO1-like CXC domain containing protein, expressed -
11 Sobic.009G259500 receptor protein kinase CLAVATA1 precursor, putative, expressed -
12 Sobic.006G153500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSCP25 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
13 Sobic.008G169400 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf and root"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@auxin response factor, putative, expressed -
14 Sobic.007G152300 homeobox associated leucine zipper, putative, expressed K09338: homeobox-leucine zipper protein
15 Sobic.010G010900 expressed protein -
16 Sobic.003G307200 expressed protein -
17 Sobic.001G393401 - -
18 Sobic.006G154000 PCF-like (ClassI) Subclade 2 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
19 Sobic.006G272500 "PKc_like super family, protein kjinases, catalytic domain"(PubMedID : 29491869)@expressed protein -
20 Sobic.003G096300 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein


Gene co-expression network
sample Sobic001G384700 Sobic001G384700 Sobic002G216600 Sobic002G216600 Sobic001G384700--Sobic002G216600 Sobic001G079900 Sobic001G079900 Sobic001G384700--Sobic001G079900 Sobic009G141700 Sobic009G141700 Sobic001G384700--Sobic009G141700 Sobic006G046600 Sobic006G046600 Sobic001G384700--Sobic006G046600 Sobic005G204100 Sobic005G204100 Sobic001G384700--Sobic005G204100 Sobic004G052800 Sobic004G052800 Sobic001G384700--Sobic004G052800 Sobic005G168400 Sobic005G168400 Sobic001G384700--Sobic005G168400 Sobic001G379900 Sobic001G379900 Sobic001G384700--Sobic001G379900 Sobic001G434100 Sobic001G434100 Sobic001G384700--Sobic001G434100 Sobic002G216600--Sobic005G204100 Sobic002G216600--Sobic001G384700 Sobic004G144100 Sobic004G144100 Sobic002G216600--Sobic004G144100 Sobic009G259500 Sobic009G259500 Sobic002G216600--Sobic009G259500 Sobic004G199700 Sobic004G199700 Sobic002G216600--Sobic004G199700 Sobic002G216600--Sobic001G079900 Sobic002G216600--Sobic009G141700 Sobic003G174900 Sobic003G174900 Sobic002G216600--Sobic003G174900 Sobic002G348700 Sobic002G348700 Sobic002G216600--Sobic002G348700 Sobic005G032600 Sobic005G032600 Sobic001G079900--Sobic005G032600 Sobic001G079900--Sobic001G384700 Sobic005G062600 Sobic005G062600 Sobic001G079900--Sobic005G062600 Sobic002G050700 Sobic002G050700 Sobic001G079900--Sobic002G050700 Sobic003G351900 Sobic003G351900 Sobic001G079900--Sobic003G351900 Sobic001G493900 Sobic001G493900 Sobic001G079900--Sobic001G493900 Sobic008G151600 Sobic008G151600 Sobic001G079900--Sobic008G151600 Sobic002G027600 Sobic002G027600 Sobic001G079900--Sobic002G027600 Sobic001G079900--Sobic009G141700 Sobic009G141700--Sobic001G079900 Sobic009G141700--Sobic001G384700 Sobic009G141700--Sobic002G216600 Sobic008G169400 Sobic008G169400 Sobic009G141700--Sobic008G169400 Sobic003G323300 Sobic003G323300 Sobic009G141700--Sobic003G323300 Sobic009G141700--Sobic006G046600 Sobic009G141700--Sobic005G062600 Sobic006G067700 Sobic006G067700 Sobic009G141700--Sobic006G067700 Sobic006G022400 Sobic006G022400 Sobic009G141700--Sobic006G022400 Sobic001G494100 Sobic001G494100 Sobic006G046600--Sobic001G494100 Sobic006G046600--Sobic001G384700 Sobic006G046600--Sobic009G141700 Sobic010G173700 Sobic010G173700 Sobic006G046600--Sobic010G173700 Sobic006G046600--Sobic002G216600 Sobic006G046600--Sobic008G169400 Sobic006G046600--Sobic001G079900 Sobic008G044600 Sobic008G044600 Sobic006G046600--Sobic008G044600 Sobic003G277900 Sobic003G277900 Sobic006G046600--Sobic003G277900 Sobic005G204100--Sobic002G216600 Sobic005G204100--Sobic009G259500 Sobic002G072700 Sobic002G072700 Sobic005G204100--Sobic002G072700 Sobic007G142900 Sobic007G142900 Sobic005G204100--Sobic007G142900 Sobic002G098500 Sobic002G098500 Sobic005G204100--Sobic002G098500 Sobic001G221900 Sobic001G221900 Sobic005G204100--Sobic001G221900 Sobic005G204100--Sobic001G384700 Sobic006G272500 Sobic006G272500 Sobic005G204100--Sobic006G272500 Sobic007G189400 Sobic007G189400 Sobic005G204100--Sobic007G189400 Sobic004G052800--Sobic001G079900 Sobic004G052800--Sobic001G384700 Sobic004G052800--Sobic002G216600 Sobic005G177900 Sobic005G177900 Sobic004G052800--Sobic005G177900 Sobic007G197100 Sobic007G197100 Sobic004G052800--Sobic007G197100 Sobic004G052800--Sobic005G204100 Sobic004G052800--Sobic005G032600 Sobic004G012700 Sobic004G012700 Sobic004G052800--Sobic004G012700 Sobic003G302000 Sobic003G302000 Sobic004G052800--Sobic003G302000 Sobic010G168700 Sobic010G168700 Sobic005G168400--Sobic010G168700 Sobic001G143400 Sobic001G143400 Sobic005G168400--Sobic001G143400 Sobic004G003700 Sobic004G003700 Sobic005G168400--Sobic004G003700 Sobic003G319900 Sobic003G319900 Sobic005G168400--Sobic003G319900 Sobic001G393200 Sobic001G393200 Sobic005G168400--Sobic001G393200 Sobic009G047500 Sobic009G047500 Sobic005G168400--Sobic009G047500 Sobic005G199700 Sobic005G199700 Sobic005G168400--Sobic005G199700 Sobic005G168400--Sobic001G379900 Sobic007G152300 Sobic007G152300 Sobic005G168400--Sobic007G152300 Sobic001G379900--Sobic004G003700 Sobic010G077000 Sobic010G077000 Sobic001G379900--Sobic010G077000 Sobic010G276600 Sobic010G276600 Sobic001G379900--Sobic010G276600 Sobic006G221800 Sobic006G221800 Sobic001G379900--Sobic006G221800 Sobic001G379900--Sobic001G493900 Sobic006G163300 Sobic006G163300 Sobic001G379900--Sobic006G163300 Sobic001G379900--Sobic001G143400 Sobic003G010700 Sobic003G010700 Sobic001G379900--Sobic003G010700 Sobic003G307200 Sobic003G307200 Sobic001G379900--Sobic003G307200 Sobic007G165800 Sobic007G165800 Sobic001G434100--Sobic007G165800 Sobic004G274600 Sobic004G274600 Sobic001G434100--Sobic004G274600 Sobic001G286700 Sobic001G286700 Sobic001G434100--Sobic001G286700 Sobic003G027100 Sobic003G027100 Sobic001G434100--Sobic003G027100 Sobic001G199400 Sobic001G199400 Sobic001G434100--Sobic001G199400 Sobic001G470200 Sobic001G470200 Sobic001G434100--Sobic001G470200 Sobic007G032100 Sobic007G032100 Sobic001G434100--Sobic007G032100 Sobic010G235300 Sobic010G235300 Sobic001G434100--Sobic010G235300 Sobic004G357000 Sobic004G357000 Sobic001G434100--Sobic004G357000
Octagon: transcription factors


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