Gene annotation
Transcriptome id Sobic.006G153500.2
Synonym Sb06g023100, scpl35
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OsSCP25 - Putative Serine Carboxypeptidase homologue, expressed
UniProt A0A1B6PLZ2
Pfam PF00450
Panther DB PTHR11802 PTHR11802:SF15
NCBI CDD KOG1282; Serine carboxypeptidases (lysosomal cathepsin A)
KEGG Orthology K16297; serine carboxypeptidase-like clade II
Gene Ontology GO:0006508; proteolysis GO:0004185serine-type carboxypeptidase activity


Orthologs (automatic annotation)
TAIR AT5G08260 : serine carboxypeptidase-like 35
RAP-DB (Rice) LOC_Os04g44410.1 : OsSCP25 - Putative Serine Carboxypeptidase homologue, expressed
MaizeGDB (Corn) Zm00025a010605
Brachypodium KQJ83677
Barley HORVU3Hr1G033560.4 , HORVU3Hr1G033560.2 , HORVU3Hr1G033560.3 , HORVU2Hr1G095100.2 , HORVU2Hr1G095100.1 , HORVU2Hr1G090490.10 , HORVU2Hr1G090490.11 , HORVU2Hr1G090490.12 , HORVU2Hr1G090490.13 , HORVU2Hr1G090490.14 , HORVU2Hr1G090490.15 , HORVU2Hr1G090490.16 , HORVU2Hr1G090490.17 , HORVU2Hr1G090490.18 , HORVU2Hr1G090490.19 , HORVU2Hr1G090490.21 , HORVU2Hr1G090490.20 , HORVU7Hr1G094190.1 , HORVU2Hr1G090490.2 , HORVU2Hr1G090490.3 , HORVU2Hr1G090490.1 , HORVU2Hr1G090490.6 , HORVU2Hr1G090490.7 , HORVU2Hr1G090490.4 , HORVU2Hr1G090490.5 , HORVU2Hr1G090490.8 , HORVU2Hr1G090490.9
Wheat TraesCS7A02G401500 , TraesCS5A02G244800 , TraesCS3B02G198000 , TraesCS2B02G393300 , TraesCS2D02G372500 , TraesCS5B02G242500 , TraesCS2A02G376300 , TraesCS2A02G376300
Populus -


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cDNA sequences
Sobic.006G153500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G384700 RNA-binding zinc finger protein, putative, expressed -
2 Sobic.003G300200 expressed protein -
3 Sobic.005G204100 kelch repeat protein, putative, expressed -
4 Sobic.009G259500 receptor protein kinase CLAVATA1 precursor, putative, expressed -
5 Sobic.001G184400 "domain confirmed by Pfam database, expression not supported"(PubMedID : 20499123)@OsSAUR55 - Auxin-responsive SAUR gene family member, expressed -
6 Sobic.002G216600 "DEP1(Ortholog in rice:Huang et al., 2009(PubMedID : 31659854)@keratin-associated protein 5-4, putative, expressed -
7 Sobic.002G072700 carboxyl-terminal peptidase, putative, expressed -
8 Sobic.004G052800 DUF640 domain containing protein, putative, expressed -
9 Sobic.005G029700 BTBA6 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed K14508: regulatory protein NPR1
10 Sobic.004G199700 expressed protein -
11 Sobic.001G393401 - -
12 Sobic.002G367300 "qGW7/GL7(Ortholog in rice:Wang et al., 2015a(PubMedID : 31659862)@expressed protein -
13 Sobic.003G174900 fimbrin-like protein 2, putative, expressed K17336: plastin-3
14 Sobic.001G221900 3-ketoacyl-CoA synthase precursor, putative, expressed K15397: 3-ketoacyl-CoA synthase
15 Sobic.004G102200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09874: aquaporin NIP
16 Sobic.001G434100 NB-ARC/LRR disease resistance protein, putative, expressed K13459: disease resistance protein RPS2
17 Sobic.010G010900 expressed protein -
18 Sobic.006G154000 PCF-like (ClassI) Subclade 2 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
19 Sobic.007G142900 receptor-like kinase, putative, expressed -
20 Sobic.007G163400 protein Kinase-like protein TMKL1 precursor, putative, expressed -


Gene co-expression network
sample Sobic006G153500 Sobic006G153500 Sobic001G384700 Sobic001G384700 Sobic006G153500--Sobic001G384700 Sobic003G300200 Sobic003G300200 Sobic006G153500--Sobic003G300200 Sobic005G204100 Sobic005G204100 Sobic006G153500--Sobic005G204100 Sobic009G259500 Sobic009G259500 Sobic006G153500--Sobic009G259500 Sobic001G184400 Sobic001G184400 Sobic006G153500--Sobic001G184400 Sobic002G216600 Sobic002G216600 Sobic006G153500--Sobic002G216600 Sobic002G072700 Sobic002G072700 Sobic006G153500--Sobic002G072700 Sobic004G052800 Sobic004G052800 Sobic006G153500--Sobic004G052800 Sobic005G029700 Sobic005G029700 Sobic006G153500--Sobic005G029700 Sobic001G384700--Sobic002G216600 Sobic001G079900 Sobic001G079900 Sobic001G384700--Sobic001G079900 Sobic009G141700 Sobic009G141700 Sobic001G384700--Sobic009G141700 Sobic006G046600 Sobic006G046600 Sobic001G384700--Sobic006G046600 Sobic001G384700--Sobic005G204100 Sobic001G384700--Sobic004G052800 Sobic005G168400 Sobic005G168400 Sobic001G384700--Sobic005G168400 Sobic001G379900 Sobic001G379900 Sobic001G384700--Sobic001G379900 Sobic001G434100 Sobic001G434100 Sobic001G384700--Sobic001G434100 Sobic001G267800 Sobic001G267800 Sobic003G300200--Sobic001G267800 Sobic003G300200--Sobic001G434100 Sobic003G300200--Sobic002G072700 Sobic009G141300 Sobic009G141300 Sobic003G300200--Sobic009G141300 Sobic003G300200--Sobic005G204100 Sobic002G139800 Sobic002G139800 Sobic003G300200--Sobic002G139800 Sobic001G221900 Sobic001G221900 Sobic003G300200--Sobic001G221900 Sobic010G010900 Sobic010G010900 Sobic003G300200--Sobic010G010900 Sobic007G189400 Sobic007G189400 Sobic003G300200--Sobic007G189400 Sobic005G204100--Sobic002G216600 Sobic005G204100--Sobic009G259500 Sobic005G204100--Sobic002G072700 Sobic007G142900 Sobic007G142900 Sobic005G204100--Sobic007G142900 Sobic002G098500 Sobic002G098500 Sobic005G204100--Sobic002G098500 Sobic005G204100--Sobic001G221900 Sobic005G204100--Sobic001G384700 Sobic006G272500 Sobic006G272500 Sobic005G204100--Sobic006G272500 Sobic005G204100--Sobic007G189400 Sobic009G259500--Sobic005G204100 Sobic009G259500--Sobic002G216600 Sobic004G154600 Sobic004G154600 Sobic009G259500--Sobic004G154600 Sobic009G259500--Sobic002G072700 Sobic004G199700 Sobic004G199700 Sobic009G259500--Sobic004G199700 Sobic009G259500--Sobic007G142900 Sobic001G258100 Sobic001G258100 Sobic009G259500--Sobic001G258100 Sobic003G174900 Sobic003G174900 Sobic009G259500--Sobic003G174900 Sobic009G259500--Sobic003G300200 Sobic002G049000 Sobic002G049000 Sobic001G184400--Sobic002G049000 Sobic010G091700 Sobic010G091700 Sobic001G184400--Sobic010G091700 Sobic002G367300 Sobic002G367300 Sobic001G184400--Sobic002G367300 Sobic002G090400 Sobic002G090400 Sobic001G184400--Sobic002G090400 Sobic010G208500 Sobic010G208500 Sobic001G184400--Sobic010G208500 Sobic002G297800 Sobic002G297800 Sobic001G184400--Sobic002G297800 Sobic005G195700 Sobic005G195700 Sobic001G184400--Sobic005G195700 Sobic001G393401 Sobic001G393401 Sobic001G184400--Sobic001G393401 Sobic001G422366 Sobic001G422366 Sobic001G184400--Sobic001G422366 Sobic002G216600--Sobic005G204100 Sobic002G216600--Sobic001G384700 Sobic004G144100 Sobic004G144100 Sobic002G216600--Sobic004G144100 Sobic002G216600--Sobic009G259500 Sobic002G216600--Sobic004G199700 Sobic002G216600--Sobic001G079900 Sobic002G216600--Sobic009G141700 Sobic002G216600--Sobic003G174900 Sobic002G348700 Sobic002G348700 Sobic002G216600--Sobic002G348700 Sobic002G072700--Sobic007G189400 Sobic001G228100 Sobic001G228100 Sobic002G072700--Sobic001G228100 Sobic002G072700--Sobic005G029700 Sobic002G072700--Sobic005G204100 Sobic002G072700--Sobic002G139800 Sobic002G072700--Sobic007G142900 Sobic002G072700--Sobic001G221900 Sobic002G072700--Sobic009G259500 Sobic006G247700 Sobic006G247700 Sobic002G072700--Sobic006G247700 Sobic004G052800--Sobic001G079900 Sobic004G052800--Sobic001G384700 Sobic004G052800--Sobic002G216600 Sobic005G177900 Sobic005G177900 Sobic004G052800--Sobic005G177900 Sobic007G197100 Sobic007G197100 Sobic004G052800--Sobic007G197100 Sobic004G052800--Sobic005G204100 Sobic005G032600 Sobic005G032600 Sobic004G052800--Sobic005G032600 Sobic004G012700 Sobic004G012700 Sobic004G052800--Sobic004G012700 Sobic003G302000 Sobic003G302000 Sobic004G052800--Sobic003G302000 Sobic005G029700--Sobic001G228100 Sobic005G029700--Sobic006G247700 Sobic005G029700--Sobic002G072700 Sobic005G029700--Sobic007G189400 Sobic005G029700--Sobic001G221900 Sobic005G029700--Sobic005G204100 Sobic003G339600 Sobic003G339600 Sobic005G029700--Sobic003G339600 Sobic005G029700--Sobic007G142900 Sobic002G315000 Sobic002G315000 Sobic005G029700--Sobic002G315000
Octagon: transcription factors


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