Gene annotation
Transcriptome id Sobic.004G052800.1
Synonym LSH4, Sb04g004470
Functional annotation DUF640 domain containing protein, putative, expressed
UniProt C5XVI3
Pfam PF04852
Panther DB PTHR31165
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G07090 : Protein of unknown function (DUF640)
RAP-DB (Rice) LOC_Os06g46030.1 : DUF640 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a021109 , Zm00025a019050 , Zm00025a041930 , Zm00025a006596 , Zm00025a039740 , Zm00025a017626 , Zm00025a037663 , Zm00025a010702 , Zm00025a056514 , Zm00025a043957 , Zm00025a044984 , Zm00025a027009 , Zm00025a037773 , Zm00025a051795
Brachypodium KQK10399 , KQK00399 , KQK17088 , KQK17087 , KQK10400 , KQJ83599 , KQK01266 , KQJ93496 , KQK21000 , KQJ97098 , KQK00400 , KQK06795
Barley HORVU3Hr1G088000.1 , HORVU1Hr1G070480.1 , HORVU3Hr1G088000.3 , HORVU3Hr1G088000.2 , HORVU3Hr1G088000.5 , HORVU3Hr1G088000.4 , HORVU3Hr1G088000.7 , HORVU3Hr1G088000.6 , HORVU3Hr1G088000.8 , HORVU1Hr1G070480.2 , HORVU1Hr1G041240.2 , HORVU1Hr1G041240.1 , HORVU1Hr1G041240.6 , HORVU1Hr1G041240.7 , HORVU1Hr1G041240.4 , HORVU1Hr1G041240.5 , HORVU7Hr1G106960.7 , HORVU7Hr1G106960.6 , HORVU7Hr1G106960.5 , HORVU7Hr1G106960.4 , HORVU7Hr1G106960.3 , HORVU7Hr1G106960.2 , HORVU1Hr1G060250.1 , HORVU2Hr1G089190.1 , HORVU2Hr1G089190.3 , HORVU2Hr1G089190.2 , HORVU2Hr1G089190.5 , HORVU2Hr1G089190.4 , HORVU2Hr1G089190.7 , HORVU2Hr1G089190.6 , HORVU2Hr1G089190.9 , HORVU2Hr1G089190.8 , HORVU6Hr1G058340.2 , HORVU6Hr1G058340.3 , HORVU6Hr1G088790.1 , HORVU6Hr1G088790.2 , HORVU6Hr1G088790.3 , HORVU6Hr1G088790.4 , HORVU6Hr1G088790.5 , HORVU6Hr1G088790.6
Wheat TraesCS1D02G294600 , TraesCS1B02G235800 , TraesCS1A02G154900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G079900 expressed protein -
2 Sobic.001G384700 RNA-binding zinc finger protein, putative, expressed -
3 Sobic.002G216600 "DEP1(Ortholog in rice:Huang et al., 2009(PubMedID : 31659854)@keratin-associated protein 5-4, putative, expressed -
4 Sobic.005G177900 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
5 Sobic.007G197100 expressed protein -
6 Sobic.005G204100 kelch repeat protein, putative, expressed -
7 Sobic.005G032600 glucan endo-1,3-beta-glucosidase-related, putative, expressed -
8 Sobic.004G012700 remorin family protein, putative, expressed -
9 Sobic.003G302000 expressed protein -
10 Sobic.001G384600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed -
11 Sobic.006G022400 F-box/RNI-like/FBD-like domains-containing protein("PubMedID : 26759170,PubMedID : 24597475")@OsFBD9 - F-box and FBD domain containing protein, expressed -
12 Sobic.007G032100 homeobox and START domains containing protein, putative, expressed K09338: homeobox-leucine zipper protein
13 Sobic.004G207000 fasciated ear2, putative, expressed -
14 Sobic.001G470200 membrane associated DUF588 domain containing protein, putative, expressed -
15 Sobic.009G259500 receptor protein kinase CLAVATA1 precursor, putative, expressed -
16 Sobic.001G393401 - -
17 Sobic.010G173700 tetraspanin family protein, putative, expressed -
18 Sobic.006G153500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsSCP25 - Putative Serine Carboxypeptidase homologue, expressed K16297: serine carboxypeptidase-like clade II
19 Sobic.002G098500 H-BTB6 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
20 Sobic.002G302600 OsFBX291 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic004G052800 Sobic004G052800 Sobic001G079900 Sobic001G079900 Sobic004G052800--Sobic001G079900 Sobic001G384700 Sobic001G384700 Sobic004G052800--Sobic001G384700 Sobic002G216600 Sobic002G216600 Sobic004G052800--Sobic002G216600 Sobic005G177900 Sobic005G177900 Sobic004G052800--Sobic005G177900 Sobic007G197100 Sobic007G197100 Sobic004G052800--Sobic007G197100 Sobic005G204100 Sobic005G204100 Sobic004G052800--Sobic005G204100 Sobic005G032600 Sobic005G032600 Sobic004G052800--Sobic005G032600 Sobic004G012700 Sobic004G012700 Sobic004G052800--Sobic004G012700 Sobic003G302000 Sobic003G302000 Sobic004G052800--Sobic003G302000 Sobic001G079900--Sobic005G032600 Sobic001G079900--Sobic001G384700 Sobic005G062600 Sobic005G062600 Sobic001G079900--Sobic005G062600 Sobic002G050700 Sobic002G050700 Sobic001G079900--Sobic002G050700 Sobic003G351900 Sobic003G351900 Sobic001G079900--Sobic003G351900 Sobic001G493900 Sobic001G493900 Sobic001G079900--Sobic001G493900 Sobic008G151600 Sobic008G151600 Sobic001G079900--Sobic008G151600 Sobic002G027600 Sobic002G027600 Sobic001G079900--Sobic002G027600 Sobic009G141700 Sobic009G141700 Sobic001G079900--Sobic009G141700 Sobic001G384700--Sobic002G216600 Sobic001G384700--Sobic001G079900 Sobic001G384700--Sobic009G141700 Sobic006G046600 Sobic006G046600 Sobic001G384700--Sobic006G046600 Sobic001G384700--Sobic005G204100 Sobic001G384700--Sobic004G052800 Sobic005G168400 Sobic005G168400 Sobic001G384700--Sobic005G168400 Sobic001G379900 Sobic001G379900 Sobic001G384700--Sobic001G379900 Sobic001G434100 Sobic001G434100 Sobic001G384700--Sobic001G434100 Sobic002G216600--Sobic005G204100 Sobic002G216600--Sobic001G384700 Sobic004G144100 Sobic004G144100 Sobic002G216600--Sobic004G144100 Sobic009G259500 Sobic009G259500 Sobic002G216600--Sobic009G259500 Sobic004G199700 Sobic004G199700 Sobic002G216600--Sobic004G199700 Sobic002G216600--Sobic001G079900 Sobic002G216600--Sobic009G141700 Sobic003G174900 Sobic003G174900 Sobic002G216600--Sobic003G174900 Sobic002G348700 Sobic002G348700 Sobic002G216600--Sobic002G348700 Sobic001G384600 Sobic001G384600 Sobic005G177900--Sobic001G384600 Sobic006G022400 Sobic006G022400 Sobic005G177900--Sobic006G022400 Sobic005G177900--Sobic004G052800 Sobic006G022500 Sobic006G022500 Sobic005G177900--Sobic006G022500 Sobic004G207000 Sobic004G207000 Sobic005G177900--Sobic004G207000 Sobic001G228400 Sobic001G228400 Sobic005G177900--Sobic001G228400 Sobic006G126600 Sobic006G126600 Sobic005G177900--Sobic006G126600 Sobic004G189700 Sobic004G189700 Sobic005G177900--Sobic004G189700 Sobic002G223300 Sobic002G223300 Sobic005G177900--Sobic002G223300 Sobic002G366000 Sobic002G366000 Sobic007G197100--Sobic002G366000 Sobic001G540700 Sobic001G540700 Sobic007G197100--Sobic001G540700 Sobic009G254000 Sobic009G254000 Sobic007G197100--Sobic009G254000 Sobic007G197100--Sobic005G032600 Sobic009G005700 Sobic009G005700 Sobic007G197100--Sobic009G005700 Sobic002G315500 Sobic002G315500 Sobic007G197100--Sobic002G315500 Sobic007G197100--Sobic004G207000 Sobic001G470200 Sobic001G470200 Sobic007G197100--Sobic001G470200 Sobic006G272800 Sobic006G272800 Sobic007G197100--Sobic006G272800 Sobic005G204100--Sobic002G216600 Sobic005G204100--Sobic009G259500 Sobic002G072700 Sobic002G072700 Sobic005G204100--Sobic002G072700 Sobic007G142900 Sobic007G142900 Sobic005G204100--Sobic007G142900 Sobic002G098500 Sobic002G098500 Sobic005G204100--Sobic002G098500 Sobic001G221900 Sobic001G221900 Sobic005G204100--Sobic001G221900 Sobic005G204100--Sobic001G384700 Sobic006G272500 Sobic006G272500 Sobic005G204100--Sobic006G272500 Sobic007G189400 Sobic007G189400 Sobic005G204100--Sobic007G189400 Sobic005G032600--Sobic002G027600 Sobic004G267600 Sobic004G267600 Sobic005G032600--Sobic004G267600 Sobic005G032600--Sobic001G079900 Sobic003G019900 Sobic003G019900 Sobic005G032600--Sobic003G019900 Sobic005G032600--Sobic006G272800 Sobic005G032600--Sobic001G493900 Sobic005G032600--Sobic008G151600 Sobic005G032600--Sobic003G351900 Sobic007G032100 Sobic007G032100 Sobic005G032600--Sobic007G032100 Sobic004G012700--Sobic001G493900 Sobic004G012700--Sobic003G302000 Sobic004G012700--Sobic001G079900 Sobic004G012700--Sobic004G052800 Sobic009G185900 Sobic009G185900 Sobic004G012700--Sobic009G185900 Sobic004G012700--Sobic005G032600 Sobic004G012700--Sobic004G267600 Sobic004G012700--Sobic007G197100 Sobic004G012700--Sobic005G168400 Sobic007G165800 Sobic007G165800 Sobic003G302000--Sobic007G165800 Sobic004G274600 Sobic004G274600 Sobic003G302000--Sobic004G274600 Sobic007G163400 Sobic007G163400 Sobic003G302000--Sobic007G163400 Sobic007G170100 Sobic007G170100 Sobic003G302000--Sobic007G170100 Sobic007G180200 Sobic007G180200 Sobic003G302000--Sobic007G180200 Sobic003G356600 Sobic003G356600 Sobic003G302000--Sobic003G356600 Sobic005G199700 Sobic005G199700 Sobic003G302000--Sobic005G199700 Sobic008G097700 Sobic008G097700 Sobic003G302000--Sobic008G097700 Sobic001G286700 Sobic001G286700 Sobic003G302000--Sobic001G286700
Octagon: transcription factors


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