Gene annotation
Transcriptome id Sobic.001G384600.1
Synonym GH9A1, DEC, TSD1, ATGH9A1, RSW2, KOR1, IRX2, KOR, Sb01g036480
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
endoglucanase, putative, expressed
UniProt C5X1P0
Pfam PF00759
Panther DB PTHR22298 PTHR22298:SF36
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT5G49720 : glycosyl hydrolase 9A1
RAP-DB (Rice) LOC_Os03g21210.1 : endoglucanase, putative, expressed
MaizeGDB (Corn) Zm00025a008042 , Zm00025a002305 , Zm00025a052451 , Zm00025a016861
Brachypodium KQK21861 , KQK13338
Barley HORVU4Hr1G011160.3 , HORVU4Hr1G011160.2 , HORVU4Hr1G011160.1 , HORVU4Hr1G011160.4
Wheat TraesCS4D02G065600 , TraesCS4A02G248200 , TraesCS4A02G131400 , TraesCS4D02G175300 , TraesCS4B02G066700 , TraesCS4B02G173200
Populus -


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cDNA sequences
Sobic.001G384600


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G177900 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
2 Sobic.006G022500 OsFBD9 - F-box and FBD domain containing protein, expressed -
3 Sobic.004G148600 ankyrin, putative, expressed -
4 Sobic.001G228400 OsFBX217 - F-box domain containing protein, expressed -
5 Sobic.009G194700 IQ calmodulin-binding motif family protein, putative, expressed -
6 Sobic.003G244700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
7 Sobic.006G126600 Trihelix Family(PubMedID : 24864043)@MYB family transcription factor, putative, expressed -
8 Sobic.006G022400 F-box/RNI-like/FBD-like domains-containing protein("PubMedID : 26759170,PubMedID : 24597475")@OsFBD9 - F-box and FBD domain containing protein, expressed -
9 Sobic.004G052800 DUF640 domain containing protein, putative, expressed -
10 Sobic.004G207000 fasciated ear2, putative, expressed -
11 Sobic.009G192500 OsFBX169 - F-box domain containing protein, expressed -
12 Sobic.001G116100 threonine dehydratase biosynthetic, chloroplast precursor, putative, expressed K01754: E4.3.1.19, ilvA, threonine dehydratase
13 Sobic.007G155400 remorin C-terminal domain containing protein, putative, expressed -
14 Sobic.001G065300 GRF zinc finger family protein, expressed -
15 Sobic.001G372900 expressed protein K08819: cyclin-dependent kinase 12/13
16 Sobic.001G130700 domain of unknown function DUF966 domain containing protein, expressed -
17 Sobic.001G352600 expressed protein -
18 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
19 Sobic.002G050500 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -
20 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45


Gene co-expression network
sample Sobic001G384600 Sobic001G384600 Sobic005G177900 Sobic005G177900 Sobic001G384600--Sobic005G177900 Sobic006G022500 Sobic006G022500 Sobic001G384600--Sobic006G022500 Sobic004G148600 Sobic004G148600 Sobic001G384600--Sobic004G148600 Sobic001G228400 Sobic001G228400 Sobic001G384600--Sobic001G228400 Sobic009G194700 Sobic009G194700 Sobic001G384600--Sobic009G194700 Sobic003G244700 Sobic003G244700 Sobic001G384600--Sobic003G244700 Sobic006G126600 Sobic006G126600 Sobic001G384600--Sobic006G126600 Sobic006G022400 Sobic006G022400 Sobic001G384600--Sobic006G022400 Sobic004G052800 Sobic004G052800 Sobic001G384600--Sobic004G052800 Sobic005G177900--Sobic001G384600 Sobic005G177900--Sobic006G022400 Sobic005G177900--Sobic004G052800 Sobic005G177900--Sobic006G022500 Sobic004G207000 Sobic004G207000 Sobic005G177900--Sobic004G207000 Sobic005G177900--Sobic001G228400 Sobic005G177900--Sobic006G126600 Sobic004G189700 Sobic004G189700 Sobic005G177900--Sobic004G189700 Sobic002G223300 Sobic002G223300 Sobic005G177900--Sobic002G223300 Sobic004G227500 Sobic004G227500 Sobic006G022500--Sobic004G227500 Sobic006G022500--Sobic004G148600 Sobic006G022500--Sobic001G384600 Sobic002G073300 Sobic002G073300 Sobic006G022500--Sobic002G073300 Sobic002G060450 Sobic002G060450 Sobic006G022500--Sobic002G060450 Sobic006G022500--Sobic004G189700 Sobic001G045700 Sobic001G045700 Sobic006G022500--Sobic001G045700 Sobic006G022500--Sobic006G022400 Sobic006G022500--Sobic005G177900 Sobic004G148600--Sobic006G022500 Sobic004G148600--Sobic001G384600 Sobic004G148600--Sobic005G177900 Sobic004G148600--Sobic003G244700 Sobic005G127300 Sobic005G127300 Sobic004G148600--Sobic005G127300 Sobic002G019600 Sobic002G019600 Sobic004G148600--Sobic002G019600 Sobic002G105000 Sobic002G105000 Sobic004G148600--Sobic002G105000 Sobic004G132100 Sobic004G132100 Sobic004G148600--Sobic004G132100 Sobic001G522400 Sobic001G522400 Sobic004G148600--Sobic001G522400 Sobic001G228400--Sobic001G384600 Sobic001G228400--Sobic005G177900 Sobic001G228400--Sobic006G126600 Sobic002G341100 Sobic002G341100 Sobic001G228400--Sobic002G341100 Sobic010G262900 Sobic010G262900 Sobic001G228400--Sobic010G262900 Sobic008G056200 Sobic008G056200 Sobic001G228400--Sobic008G056200 Sobic006G250100 Sobic006G250100 Sobic001G228400--Sobic006G250100 Sobic003G014900 Sobic003G014900 Sobic001G228400--Sobic003G014900 Sobic003G035500 Sobic003G035500 Sobic001G228400--Sobic003G035500 Sobic009G194700--Sobic001G384600 Sobic009G194700--Sobic005G177900 Sobic009G194700--Sobic006G126600 Sobic009G194700--Sobic006G022500 Sobic009G192500 Sobic009G192500 Sobic009G194700--Sobic009G192500 Sobic001G352600 Sobic001G352600 Sobic009G194700--Sobic001G352600 Sobic009G194700--Sobic004G207000 Sobic007G197100 Sobic007G197100 Sobic009G194700--Sobic007G197100 Sobic007G125700 Sobic007G125700 Sobic009G194700--Sobic007G125700 Sobic006G203200 Sobic006G203200 Sobic003G244700--Sobic006G203200 Sobic002G253600 Sobic002G253600 Sobic003G244700--Sobic002G253600 Sobic003G244700--Sobic002G019600 Sobic002G050500 Sobic002G050500 Sobic003G244700--Sobic002G050500 Sobic002G362300 Sobic002G362300 Sobic003G244700--Sobic002G362300 Sobic001G371000 Sobic001G371000 Sobic003G244700--Sobic001G371000 Sobic010G235500 Sobic010G235500 Sobic003G244700--Sobic010G235500 Sobic002G016900 Sobic002G016900 Sobic003G244700--Sobic002G016900 Sobic003G244700--Sobic001G384600 Sobic009G257500 Sobic009G257500 Sobic006G126600--Sobic009G257500 Sobic006G126600--Sobic004G207000 Sobic006G126600--Sobic008G056200 Sobic009G031500 Sobic009G031500 Sobic006G126600--Sobic009G031500 Sobic006G126600--Sobic009G192500 Sobic003G415100 Sobic003G415100 Sobic006G126600--Sobic003G415100 Sobic006G126600--Sobic007G125700 Sobic006G126600--Sobic005G177900 Sobic002G302600 Sobic002G302600 Sobic006G126600--Sobic002G302600 Sobic006G022400--Sobic004G207000 Sobic001G079900 Sobic001G079900 Sobic006G022400--Sobic001G079900 Sobic009G216500 Sobic009G216500 Sobic006G022400--Sobic009G216500 Sobic006G022400--Sobic005G177900 Sobic001G395200 Sobic001G395200 Sobic006G022400--Sobic001G395200 Sobic003G351900 Sobic003G351900 Sobic006G022400--Sobic003G351900 Sobic006G022400--Sobic006G022500 Sobic008G169400 Sobic008G169400 Sobic006G022400--Sobic008G169400 Sobic005G032600 Sobic005G032600 Sobic006G022400--Sobic005G032600 Sobic004G052800--Sobic001G079900 Sobic001G384700 Sobic001G384700 Sobic004G052800--Sobic001G384700 Sobic002G216600 Sobic002G216600 Sobic004G052800--Sobic002G216600 Sobic004G052800--Sobic005G177900 Sobic004G052800--Sobic007G197100 Sobic005G204100 Sobic005G204100 Sobic004G052800--Sobic005G204100 Sobic004G052800--Sobic005G032600 Sobic004G012700 Sobic004G012700 Sobic004G052800--Sobic004G012700 Sobic003G302000 Sobic003G302000 Sobic004G052800--Sobic003G302000
Octagon: transcription factors


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