Gene annotation
Transcriptome id Sobic.001G372900.1,Sobic.001G372900.2,Sobic.001G372900.3
Synonym Sb01g035420
Functional annotation expressed protein
UniProt A0A1Z5S9S7 , A0A1Z5S9I1 , A0A1B6QN84
Pfam PF00069
Panther DB PTHR24056 PTHR24056:SF207
NCBI CDD KOG0663; Protein kinase PITSLRE and related kinases
KEGG Orthology K08819; cyclin-dependent kinase 12/13
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT1G54610 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os07g47180.1,LOC_Os07g47180.2 : transposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a049083 , Zm00025a002450 , Zm00025a039254 , Zm00025a018187 , Zm00025a052383 , Zm00025a015384 , Zm00025a026210 , Zm00025a004331 , Zm00025a020703
Brachypodium KQJ99916 , KQK14763 , KQK14762 , KQK21688 , KQK21687
Barley HORVU4Hr1G048510.1 , HORVU4Hr1G048510.2 , HORVU4Hr1G048510.3 , HORVU4Hr1G048510.4 , HORVU4Hr1G048510.5 , HORVU2Hr1G020680.4 , HORVU2Hr1G020680.1 , HORVU2Hr1G020680.2 , HORVU2Hr1G020680.3 , HORVU7Hr1G101210.1 , HORVU5Hr1G020060.10 , HORVU5Hr1G020060.7 , HORVU5Hr1G020060.6 , HORVU5Hr1G020060.5 , HORVU5Hr1G020060.4 , HORVU5Hr1G020060.3 , HORVU5Hr1G020060.2 , HORVU5Hr1G020060.1 , HORVU5Hr1G020060.9
Wheat TraesCS2B02G139000 , TraesCS5A02G075200 , TraesCS6D02G184000 , TraesCS6D02G184000 , TraesCS5B02G081500 , TraesCS5D02G088700 , TraesCS5D02G088700 , TraesCS7D02G435700 , TraesCS4B02G151800 , TraesCS4D02G151100 , TraesCS2A02G119300 , TraesCS6A02G192900 , TraesCS6A02G192900 , TraesCS4A02G142300 , TraesCS2D02G120200 , TraesCS6B02G231200 , TraesCS6B02G231200 , TraesCS6B02G231200 , TraesCS7B02G345800 , TraesCS3A02G439200
Populus -


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cDNA sequences
Sobic.001G372900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G499200 PLAC8 family protein, expressed -
2 Sobic.001G296100 DUF630/DUF632 domains containing protein, putative, expressed -
3 Sobic.003G077500 expressed protein -
4 Sobic.006G081500 receptor-like kinase, putative, expressed -
5 Sobic.001G157100 BTBN17 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
6 Sobic.006G084300 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
7 Sobic.001G540700 expressed protein -
8 Sobic.008G172200 CIN-like (ClassII) Subclade 12 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
9 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
10 Sobic.006G254500 IQ calmodulin-binding motif family protein, putative, expressed -
11 Sobic.001G487200 zinc finger, C3HC4 type domain containing protein, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
12 Sobic.005G177900 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
13 Sobic.009G031500 agenet domain containing protein, putative, expressed -
14 Sobic.001G268700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lysosomal alpha-mannosidase precursor, putative, expressed K01191: alpha-mannosidase
15 Sobic.004G315700 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
16 Sobic.003G351900 fasciclin-like arabinogalactan protein, putative, expressed -
17 Sobic.002G130900 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
18 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
19 Sobic.002G341200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STRUBBELIG-RECEPTOR FAMILY 1 precursor, putative, expressed -
20 Sobic.009G212100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IQ calmodulin-binding motif family protein, putative, expressed -


Gene co-expression network
sample Sobic001G372900 Sobic001G372900 Sobic001G499200 Sobic001G499200 Sobic001G372900--Sobic001G499200 Sobic001G296100 Sobic001G296100 Sobic001G372900--Sobic001G296100 Sobic003G077500 Sobic003G077500 Sobic001G372900--Sobic003G077500 Sobic006G081500 Sobic006G081500 Sobic001G372900--Sobic006G081500 Sobic001G157100 Sobic001G157100 Sobic001G372900--Sobic001G157100 Sobic006G084300 Sobic006G084300 Sobic001G372900--Sobic006G084300 Sobic001G540700 Sobic001G540700 Sobic001G372900--Sobic001G540700 Sobic008G172200 Sobic008G172200 Sobic001G372900--Sobic008G172200 Sobic002G334600 Sobic002G334600 Sobic001G372900--Sobic002G334600 Sobic001G499200--Sobic001G296100 Sobic001G499200--Sobic001G372900 Sobic001G499200--Sobic006G081500 Sobic004G315700 Sobic004G315700 Sobic001G499200--Sobic004G315700 Sobic008G048966 Sobic008G048966 Sobic001G499200--Sobic008G048966 Sobic001G079900 Sobic001G079900 Sobic001G499200--Sobic001G079900 Sobic009G124800 Sobic009G124800 Sobic001G499200--Sobic009G124800 Sobic001G019200 Sobic001G019200 Sobic001G499200--Sobic001G019200 Sobic001G499200--Sobic001G157100 Sobic006G272500 Sobic006G272500 Sobic001G296100--Sobic006G272500 Sobic001G296100--Sobic001G499200 Sobic001G296100--Sobic009G124800 Sobic006G142500 Sobic006G142500 Sobic001G296100--Sobic006G142500 Sobic003G283600 Sobic003G283600 Sobic001G296100--Sobic003G283600 Sobic001G290500 Sobic001G290500 Sobic001G296100--Sobic001G290500 Sobic001G296100--Sobic004G315700 Sobic001G487200 Sobic001G487200 Sobic001G296100--Sobic001G487200 Sobic001G296100--Sobic001G372900 Sobic001G315400 Sobic001G315400 Sobic003G077500--Sobic001G315400 Sobic007G125700 Sobic007G125700 Sobic003G077500--Sobic007G125700 Sobic003G077500--Sobic001G372900 Sobic003G077500--Sobic002G334600 Sobic002G219900 Sobic002G219900 Sobic003G077500--Sobic002G219900 Sobic006G254500 Sobic006G254500 Sobic003G077500--Sobic006G254500 Sobic001G367100 Sobic001G367100 Sobic003G077500--Sobic001G367100 Sobic003G077500--Sobic004G315700 Sobic009G031500 Sobic009G031500 Sobic003G077500--Sobic009G031500 Sobic006G081500--Sobic001G372900 Sobic006G081500--Sobic001G296100 Sobic006G081500--Sobic001G499200 Sobic003G351900 Sobic003G351900 Sobic006G081500--Sobic003G351900 Sobic006G081500--Sobic001G540700 Sobic006G081500--Sobic003G283600 Sobic006G022400 Sobic006G022400 Sobic006G081500--Sobic006G022400 Sobic006G081500--Sobic006G142500 Sobic003G153900 Sobic003G153900 Sobic006G081500--Sobic003G153900 Sobic001G157100--Sobic001G372900 Sobic001G157100--Sobic001G296100 Sobic001G157100--Sobic003G077500 Sobic009G064900 Sobic009G064900 Sobic001G157100--Sobic009G064900 Sobic001G157100--Sobic001G487200 Sobic001G047200 Sobic001G047200 Sobic001G157100--Sobic001G047200 Sobic006G167300 Sobic006G167300 Sobic001G157100--Sobic006G167300 Sobic001G157100--Sobic001G499200 Sobic007G210900 Sobic007G210900 Sobic001G157100--Sobic007G210900 Sobic006G084300--Sobic004G315700 Sobic001G199500 Sobic001G199500 Sobic006G084300--Sobic001G199500 Sobic008G090000 Sobic008G090000 Sobic006G084300--Sobic008G090000 Sobic009G212100 Sobic009G212100 Sobic006G084300--Sobic009G212100 Sobic006G071628 Sobic006G071628 Sobic006G084300--Sobic006G071628 Sobic001G425700 Sobic001G425700 Sobic006G084300--Sobic001G425700 Sobic003G104100 Sobic003G104100 Sobic006G084300--Sobic003G104100 Sobic006G281900 Sobic006G281900 Sobic006G084300--Sobic006G281900 Sobic003G024000 Sobic003G024000 Sobic006G084300--Sobic003G024000 Sobic002G284100 Sobic002G284100 Sobic001G540700--Sobic002G284100 Sobic007G197100 Sobic007G197100 Sobic001G540700--Sobic007G197100 Sobic004G207000 Sobic004G207000 Sobic001G540700--Sobic004G207000 Sobic004G267600 Sobic004G267600 Sobic001G540700--Sobic004G267600 Sobic001G540700--Sobic004G315700 Sobic006G272800 Sobic006G272800 Sobic001G540700--Sobic006G272800 Sobic001G540700--Sobic001G487200 Sobic001G369800 Sobic001G369800 Sobic001G540700--Sobic001G369800 Sobic003G345000 Sobic003G345000 Sobic001G540700--Sobic003G345000 Sobic008G172200--Sobic001G372900 Sobic001G212600 Sobic001G212600 Sobic008G172200--Sobic001G212600 Sobic008G172200--Sobic003G351900 Sobic003G107900 Sobic003G107900 Sobic008G172200--Sobic003G107900 Sobic008G172200--Sobic001G157100 Sobic008G172200--Sobic002G334600 Sobic008G172200--Sobic001G499200 Sobic008G172200--Sobic009G064900 Sobic002G223300 Sobic002G223300 Sobic008G172200--Sobic002G223300 Sobic002G334600--Sobic002G223300 Sobic009G030300 Sobic009G030300 Sobic002G334600--Sobic009G030300 Sobic007G139400 Sobic007G139400 Sobic002G334600--Sobic007G139400 Sobic007G188900 Sobic007G188900 Sobic002G334600--Sobic007G188900 Sobic003G132700 Sobic003G132700 Sobic002G334600--Sobic003G132700 Sobic002G089900 Sobic002G089900 Sobic002G334600--Sobic002G089900 Sobic003G354100 Sobic003G354100 Sobic002G334600--Sobic003G354100 Sobic009G044900 Sobic009G044900 Sobic002G334600--Sobic009G044900 Sobic002G157200 Sobic002G157200 Sobic002G334600--Sobic002G157200
Octagon: transcription factors


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