Gene annotation
Transcriptome id Sobic.001G499200.1
Synonym MCA1, Sb01g046630
Functional annotation PLAC8 family protein, expressed
UniProt C5WXT4
Pfam PF04749
Panther DB PTHR31704 PTHR31704:SF3
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G35920 : PLAC8 family protein
RAP-DB (Rice) LOC_Os03g06120.2 : PLAC8 family protein, expressed
MaizeGDB (Corn) Zm00025a022617 , Zm00025a000718
Brachypodium KQK23570 , PNT78164 , KQK23569
Barley HORVU4Hr1G072630.1 , HORVU4Hr1G072630.2 , HORVU4Hr1G072630.3 , HORVU4Hr1G072630.4 , HORVU4Hr1G072630.5 , HORVU4Hr1G072630.6 , HORVU4Hr1G072630.7 , HORVU4Hr1G072630.8
Wheat TraesCS4B02G272300 , TraesCS4D02G271400
Populus -


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cDNA sequences
Sobic.001G499200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G296100 DUF630/DUF632 domains containing protein, putative, expressed -
2 Sobic.001G372900 expressed protein K08819: cyclin-dependent kinase 12/13
3 Sobic.006G081500 receptor-like kinase, putative, expressed -
4 Sobic.004G315700 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
5 Sobic.008G048966 - -
6 Sobic.001G079900 expressed protein -
7 Sobic.009G124800 zinc finger, C3HC4 type domain containing protein, expressed -
8 Sobic.001G019200 H-BTB2 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with H family conserved sequence, expressed -
9 Sobic.001G157100 BTBN17 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
10 Sobic.006G272500 "PKc_like super family, protein kjinases, catalytic domain"(PubMedID : 29491869)@expressed protein -
11 Sobic.010G135300 expressed protein -
12 Sobic.003G351900 fasciclin-like arabinogalactan protein, putative, expressed -
13 Sobic.006G084300 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
14 Sobic.003G077500 expressed protein -
15 Sobic.002G216600 "DEP1(Ortholog in rice:Huang et al., 2009(PubMedID : 31659854)@keratin-associated protein 5-4, putative, expressed -
16 Sobic.004G189700 OsFBL33 - F-box domain and LRR containing protein, expressed -
17 Sobic.006G022400 F-box/RNI-like/FBD-like domains-containing protein("PubMedID : 26759170,PubMedID : 24597475")@OsFBD9 - F-box and FBD domain containing protein, expressed -
18 Sobic.004G199700 expressed protein -
19 Sobic.002G293700 ATXR, putative, expressed -
20 Sobic.009G212100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IQ calmodulin-binding motif family protein, putative, expressed -


Gene co-expression network
sample Sobic001G499200 Sobic001G499200 Sobic001G296100 Sobic001G296100 Sobic001G499200--Sobic001G296100 Sobic001G372900 Sobic001G372900 Sobic001G499200--Sobic001G372900 Sobic006G081500 Sobic006G081500 Sobic001G499200--Sobic006G081500 Sobic004G315700 Sobic004G315700 Sobic001G499200--Sobic004G315700 Sobic008G048966 Sobic008G048966 Sobic001G499200--Sobic008G048966 Sobic001G079900 Sobic001G079900 Sobic001G499200--Sobic001G079900 Sobic009G124800 Sobic009G124800 Sobic001G499200--Sobic009G124800 Sobic001G019200 Sobic001G019200 Sobic001G499200--Sobic001G019200 Sobic001G157100 Sobic001G157100 Sobic001G499200--Sobic001G157100 Sobic006G272500 Sobic006G272500 Sobic001G296100--Sobic006G272500 Sobic001G296100--Sobic001G499200 Sobic001G296100--Sobic009G124800 Sobic006G142500 Sobic006G142500 Sobic001G296100--Sobic006G142500 Sobic003G283600 Sobic003G283600 Sobic001G296100--Sobic003G283600 Sobic001G290500 Sobic001G290500 Sobic001G296100--Sobic001G290500 Sobic001G296100--Sobic004G315700 Sobic001G487200 Sobic001G487200 Sobic001G296100--Sobic001G487200 Sobic001G296100--Sobic001G372900 Sobic001G372900--Sobic001G499200 Sobic001G372900--Sobic001G296100 Sobic003G077500 Sobic003G077500 Sobic001G372900--Sobic003G077500 Sobic001G372900--Sobic006G081500 Sobic001G372900--Sobic001G157100 Sobic006G084300 Sobic006G084300 Sobic001G372900--Sobic006G084300 Sobic001G540700 Sobic001G540700 Sobic001G372900--Sobic001G540700 Sobic008G172200 Sobic008G172200 Sobic001G372900--Sobic008G172200 Sobic002G334600 Sobic002G334600 Sobic001G372900--Sobic002G334600 Sobic006G081500--Sobic001G372900 Sobic006G081500--Sobic001G296100 Sobic006G081500--Sobic001G499200 Sobic003G351900 Sobic003G351900 Sobic006G081500--Sobic003G351900 Sobic006G081500--Sobic001G540700 Sobic006G081500--Sobic003G283600 Sobic006G022400 Sobic006G022400 Sobic006G081500--Sobic006G022400 Sobic006G081500--Sobic006G142500 Sobic003G153900 Sobic003G153900 Sobic006G081500--Sobic003G153900 Sobic004G315700--Sobic001G487200 Sobic009G212100 Sobic009G212100 Sobic004G315700--Sobic009G212100 Sobic001G296800 Sobic001G296800 Sobic004G315700--Sobic001G296800 Sobic009G052100 Sobic009G052100 Sobic004G315700--Sobic009G052100 Sobic004G315700--Sobic006G084300 Sobic003G420300 Sobic003G420300 Sobic004G315700--Sobic003G420300 Sobic006G218900 Sobic006G218900 Sobic004G315700--Sobic006G218900 Sobic003G345000 Sobic003G345000 Sobic004G315700--Sobic003G345000 Sobic004G315700--Sobic001G540700 Sobic001G244900 Sobic001G244900 Sobic008G048966--Sobic001G244900 Sobic008G048966--Sobic001G019200 Sobic003G104100 Sobic003G104100 Sobic008G048966--Sobic003G104100 Sobic009G207400 Sobic009G207400 Sobic008G048966--Sobic009G207400 Sobic006G240900 Sobic006G240900 Sobic008G048966--Sobic006G240900 Sobic009G200000 Sobic009G200000 Sobic008G048966--Sobic009G200000 Sobic010G257000 Sobic010G257000 Sobic008G048966--Sobic010G257000 Sobic008G048966--Sobic001G296100 Sobic001G395200 Sobic001G395200 Sobic008G048966--Sobic001G395200 Sobic005G032600 Sobic005G032600 Sobic001G079900--Sobic005G032600 Sobic001G384700 Sobic001G384700 Sobic001G079900--Sobic001G384700 Sobic005G062600 Sobic005G062600 Sobic001G079900--Sobic005G062600 Sobic002G050700 Sobic002G050700 Sobic001G079900--Sobic002G050700 Sobic001G079900--Sobic003G351900 Sobic001G493900 Sobic001G493900 Sobic001G079900--Sobic001G493900 Sobic008G151600 Sobic008G151600 Sobic001G079900--Sobic008G151600 Sobic002G027600 Sobic002G027600 Sobic001G079900--Sobic002G027600 Sobic009G141700 Sobic009G141700 Sobic001G079900--Sobic009G141700 Sobic009G124800--Sobic006G272500 Sobic002G293700 Sobic002G293700 Sobic009G124800--Sobic002G293700 Sobic001G074100 Sobic001G074100 Sobic009G124800--Sobic001G074100 Sobic009G124800--Sobic001G296100 Sobic001G381100 Sobic001G381100 Sobic009G124800--Sobic001G381100 Sobic006G241800 Sobic006G241800 Sobic009G124800--Sobic006G241800 Sobic010G211800 Sobic010G211800 Sobic009G124800--Sobic010G211800 Sobic002G370400 Sobic002G370400 Sobic009G124800--Sobic002G370400 Sobic004G115700 Sobic004G115700 Sobic009G124800--Sobic004G115700 Sobic010G135300 Sobic010G135300 Sobic001G019200--Sobic010G135300 Sobic001G019200--Sobic008G048966 Sobic002G216600 Sobic002G216600 Sobic001G019200--Sobic002G216600 Sobic001G217100 Sobic001G217100 Sobic001G019200--Sobic001G217100 Sobic001G113800 Sobic001G113800 Sobic001G019200--Sobic001G113800 Sobic001G019200--Sobic001G499200 Sobic001G019200--Sobic001G296100 Sobic003G096300 Sobic003G096300 Sobic001G019200--Sobic003G096300 Sobic002G098500 Sobic002G098500 Sobic001G019200--Sobic002G098500 Sobic001G157100--Sobic001G372900 Sobic001G157100--Sobic001G296100 Sobic001G157100--Sobic003G077500 Sobic009G064900 Sobic009G064900 Sobic001G157100--Sobic009G064900 Sobic001G157100--Sobic001G487200 Sobic001G047200 Sobic001G047200 Sobic001G157100--Sobic001G047200 Sobic006G167300 Sobic006G167300 Sobic001G157100--Sobic006G167300 Sobic001G157100--Sobic001G499200 Sobic007G210900 Sobic007G210900 Sobic001G157100--Sobic007G210900
Octagon: transcription factors


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