Gene annotation
Transcriptome id Sobic.001G157100.1
Synonym Sb01g013680
Functional annotation BTBN17 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
UniProt C5WR83
Pfam PF03000 PF00651
Panther DB PTHR32370:SF12 PTHR32370
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G30440 : Phototropic-responsive NPH3 family protein
RAP-DB (Rice) LOC_Os03g43990.1 : BTBN8 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed
MaizeGDB (Corn) Zm00025a011960 , Zm00025a007294 , Zm00025a036102
Brachypodium KQJ94960 , KQJ94959 , KQK14009 , PNT74390
Barley HORVU5Hr1G093120.4 , HORVU5Hr1G093120.5 , HORVU5Hr1G093120.1 , HORVU5Hr1G093120.2 , HORVU5Hr1G093120.3
Wheat TraesCS5D02G385100 , TraesCS5B02G046200 , TraesCS5B02G046200 , TraesCS5B02G377600 , TraesCS5B02G377600 , TraesCS5A02G375500 , TraesCS5A02G375500 , TraesCS5A02G375500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.001G157100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G372900 expressed protein K08819: cyclin-dependent kinase 12/13
2 Sobic.001G296100 DUF630/DUF632 domains containing protein, putative, expressed -
3 Sobic.003G077500 expressed protein -
4 Sobic.009G064900 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
5 Sobic.001G487200 zinc finger, C3HC4 type domain containing protein, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
6 Sobic.001G047200 carboxyl-terminal peptidase, putative, expressed -
7 Sobic.006G167300 AGC_PVPK_like_kin82y.11 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
8 Sobic.001G499200 PLAC8 family protein, expressed -
9 Sobic.007G210900 expressed protein -
10 Sobic.002G348700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@carboxyl-terminal peptidase, putative, expressed -
11 Sobic.009G212100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IQ calmodulin-binding motif family protein, putative, expressed -
12 Sobic.003G351900 fasciclin-like arabinogalactan protein, putative, expressed -
13 Sobic.001G468500 ethylene-responsive element-binding protein, putative, expressed -
14 Sobic.002G002100 expressed protein -
15 Sobic.006G084300 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
16 Sobic.009G124800 zinc finger, C3HC4 type domain containing protein, expressed -
17 Sobic.008G172200 CIN-like (ClassII) Subclade 12 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
18 Sobic.004G315700 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
19 Sobic.008G190500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plasma membrane ATPase, putative, expressed K01535: PMA1, H+-transporting ATPase
20 Sobic.001G113800 receptor protein kinase TMK1 precursor, putative, expressed -


Gene co-expression network
sample Sobic001G157100 Sobic001G157100 Sobic001G372900 Sobic001G372900 Sobic001G157100--Sobic001G372900 Sobic001G296100 Sobic001G296100 Sobic001G157100--Sobic001G296100 Sobic003G077500 Sobic003G077500 Sobic001G157100--Sobic003G077500 Sobic009G064900 Sobic009G064900 Sobic001G157100--Sobic009G064900 Sobic001G487200 Sobic001G487200 Sobic001G157100--Sobic001G487200 Sobic001G047200 Sobic001G047200 Sobic001G157100--Sobic001G047200 Sobic006G167300 Sobic006G167300 Sobic001G157100--Sobic006G167300 Sobic001G499200 Sobic001G499200 Sobic001G157100--Sobic001G499200 Sobic007G210900 Sobic007G210900 Sobic001G157100--Sobic007G210900 Sobic001G372900--Sobic001G499200 Sobic001G372900--Sobic001G296100 Sobic001G372900--Sobic003G077500 Sobic006G081500 Sobic006G081500 Sobic001G372900--Sobic006G081500 Sobic001G372900--Sobic001G157100 Sobic006G084300 Sobic006G084300 Sobic001G372900--Sobic006G084300 Sobic001G540700 Sobic001G540700 Sobic001G372900--Sobic001G540700 Sobic008G172200 Sobic008G172200 Sobic001G372900--Sobic008G172200 Sobic002G334600 Sobic002G334600 Sobic001G372900--Sobic002G334600 Sobic006G272500 Sobic006G272500 Sobic001G296100--Sobic006G272500 Sobic001G296100--Sobic001G499200 Sobic009G124800 Sobic009G124800 Sobic001G296100--Sobic009G124800 Sobic006G142500 Sobic006G142500 Sobic001G296100--Sobic006G142500 Sobic003G283600 Sobic003G283600 Sobic001G296100--Sobic003G283600 Sobic001G290500 Sobic001G290500 Sobic001G296100--Sobic001G290500 Sobic004G315700 Sobic004G315700 Sobic001G296100--Sobic004G315700 Sobic001G296100--Sobic001G487200 Sobic001G296100--Sobic001G372900 Sobic001G315400 Sobic001G315400 Sobic003G077500--Sobic001G315400 Sobic007G125700 Sobic007G125700 Sobic003G077500--Sobic007G125700 Sobic003G077500--Sobic001G372900 Sobic003G077500--Sobic002G334600 Sobic002G219900 Sobic002G219900 Sobic003G077500--Sobic002G219900 Sobic006G254500 Sobic006G254500 Sobic003G077500--Sobic006G254500 Sobic001G367100 Sobic001G367100 Sobic003G077500--Sobic001G367100 Sobic003G077500--Sobic004G315700 Sobic009G031500 Sobic009G031500 Sobic003G077500--Sobic009G031500 Sobic001G113800 Sobic001G113800 Sobic009G064900--Sobic001G113800 Sobic009G064900--Sobic001G487200 Sobic009G064900--Sobic001G157100 Sobic002G007200 Sobic002G007200 Sobic009G064900--Sobic002G007200 Sobic009G064900--Sobic001G372900 Sobic009G064900--Sobic007G210900 Sobic008G086200 Sobic008G086200 Sobic009G064900--Sobic008G086200 Sobic010G046400 Sobic010G046400 Sobic009G064900--Sobic010G046400 Sobic003G174900 Sobic003G174900 Sobic009G064900--Sobic003G174900 Sobic001G487200--Sobic004G315700 Sobic009G212100 Sobic009G212100 Sobic001G487200--Sobic009G212100 Sobic001G369800 Sobic001G369800 Sobic001G487200--Sobic001G369800 Sobic001G231200 Sobic001G231200 Sobic001G487200--Sobic001G231200 Sobic002G370400 Sobic002G370400 Sobic001G487200--Sobic002G370400 Sobic003G226700 Sobic003G226700 Sobic001G487200--Sobic003G226700 Sobic001G487200--Sobic001G540700 Sobic001G296800 Sobic001G296800 Sobic001G487200--Sobic001G296800 Sobic007G084200 Sobic007G084200 Sobic001G487200--Sobic007G084200 Sobic002G311000 Sobic002G311000 Sobic001G047200--Sobic002G311000 Sobic002G142500 Sobic002G142500 Sobic001G047200--Sobic002G142500 Sobic010G135300 Sobic010G135300 Sobic001G047200--Sobic010G135300 Sobic002G377300 Sobic002G377300 Sobic001G047200--Sobic002G377300 Sobic003G096300 Sobic003G096300 Sobic001G047200--Sobic003G096300 Sobic001G482300 Sobic001G482300 Sobic001G047200--Sobic001G482300 Sobic003G420800 Sobic003G420800 Sobic001G047200--Sobic003G420800 Sobic001G047200--Sobic001G157100 Sobic009G148200 Sobic009G148200 Sobic001G047200--Sobic009G148200 Sobic002G002100 Sobic002G002100 Sobic006G167300--Sobic002G002100 Sobic004G255800 Sobic004G255800 Sobic006G167300--Sobic004G255800 Sobic006G167300--Sobic007G210900 Sobic004G199700 Sobic004G199700 Sobic006G167300--Sobic004G199700 Sobic006G167300--Sobic001G157100 Sobic006G167300--Sobic008G086200 Sobic002G348700 Sobic002G348700 Sobic006G167300--Sobic002G348700 Sobic006G167300--Sobic001G047200 Sobic001G217100 Sobic001G217100 Sobic006G167300--Sobic001G217100 Sobic001G499200--Sobic001G296100 Sobic001G499200--Sobic001G372900 Sobic001G499200--Sobic006G081500 Sobic001G499200--Sobic004G315700 Sobic008G048966 Sobic008G048966 Sobic001G499200--Sobic008G048966 Sobic001G079900 Sobic001G079900 Sobic001G499200--Sobic001G079900 Sobic001G499200--Sobic009G124800 Sobic001G019200 Sobic001G019200 Sobic001G499200--Sobic001G019200 Sobic001G499200--Sobic001G157100 Sobic007G210900--Sobic003G420800 Sobic004G154600 Sobic004G154600 Sobic007G210900--Sobic004G154600 Sobic007G210900--Sobic004G199700 Sobic007G210900--Sobic002G002100 Sobic007G210900--Sobic002G348700 Sobic004G205500 Sobic004G205500 Sobic007G210900--Sobic004G205500 Sobic007G210900--Sobic006G167300 Sobic008G190500 Sobic008G190500 Sobic007G210900--Sobic008G190500 Sobic002G179700 Sobic002G179700 Sobic007G210900--Sobic002G179700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.