Gene annotation
Transcriptome id Sobic.001G468500.1
Synonym Sb01g043920
Functional annotation ethylene-responsive element-binding protein, putative, expressed
UniProt C5WTV7
Pfam PF05903
Panther DB PTHR12378 PTHR12378:SF4
NCBI CDD KOG0324; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G47740 : PPPDE putative thiol peptidase family protein
RAP-DB (Rice) LOC_Os03g10200.1 : ethylene-responsive element-binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a001187 , Zm00025a053165
Brachypodium PNT77972 , KQK23099 , KQK23098
Barley -
Wheat TraesCS4D02G261500 , TraesCS4B02G261700 , TraesCS4A02G040500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G283600 HVA22, putative, expressed -
2 Sobic.003G003700 ABIL2, putative, expressed -
3 Sobic.004G286700 GDSL-like lipase/acylhydrolase, putative, expressed -
4 Sobic.010G277300 "BRD2(Ortholog in rice:Hong et al., 2005)"(PubMedID : 31659939)@FAD-linked oxidoreductase protein, putative, expressed K09828: DHCR24, Delta24-sterol reductase
5 Sobic.006G133700 transcription factor RF2a, putative, expressed -
6 Sobic.001G030400 protein kinase family protein, putative, expressed -
7 Sobic.002G238500 AGC_PVPK_like_kin82y.16 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
8 Sobic.004G036800 glucan endo-1,3-beta-glucosidase precursor, putative, expressed -
9 Sobic.004G331200 expressed protein -
10 Sobic.007G094400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@fiber protein Fb34, putative, expressed -
11 Sobic.008G096200 AGC_PVPK_like_kin82y.19 - ACG kinases include homologs to PKA, PKG and PKC, expressed -
12 Sobic.007G113300 BRASSINOSTEROID INSENSITIVE 1 precursor, putative, expressed -
13 Sobic.003G420100 RNA recognition motif containing protein, putative, expressed K13207: CUGBP, BRUNOL, CUG-BP- and ETR3-like factor
14 Sobic.001G080200 peroxidase precursor, putative, expressed K00430: peroxidase
15 Sobic.009G242501 - -
16 Sobic.006G236700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, stem and root, expression induced by IAA, BR and ABA treatments"(PubMedID : 20528920)@multidrug resistance protein, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
17 Sobic.001G369800 monocopper oxidase, putative, expressed -
18 Sobic.003G246800 GATA zinc finger domain containing protein, expressed -
19 Sobic.004G357500 expressed protein -
20 Sobic.003G412800 Candidate orthologue to the genomic region of wheat Hessian fy resistance gene H32(PubMedID : 28624908)@expressed protein -


Gene co-expression network
sample Sobic001G468500 Sobic001G468500 Sobic003G283600 Sobic003G283600 Sobic001G468500--Sobic003G283600 Sobic003G003700 Sobic003G003700 Sobic001G468500--Sobic003G003700 Sobic004G286700 Sobic004G286700 Sobic001G468500--Sobic004G286700 Sobic010G277300 Sobic010G277300 Sobic001G468500--Sobic010G277300 Sobic006G133700 Sobic006G133700 Sobic001G468500--Sobic006G133700 Sobic001G030400 Sobic001G030400 Sobic001G468500--Sobic001G030400 Sobic002G238500 Sobic002G238500 Sobic001G468500--Sobic002G238500 Sobic004G036800 Sobic004G036800 Sobic001G468500--Sobic004G036800 Sobic004G331200 Sobic004G331200 Sobic001G468500--Sobic004G331200 Sobic001G290500 Sobic001G290500 Sobic003G283600--Sobic001G290500 Sobic003G345000 Sobic003G345000 Sobic003G283600--Sobic003G345000 Sobic003G283600--Sobic001G468500 Sobic010G003300 Sobic010G003300 Sobic003G283600--Sobic010G003300 Sobic006G142500 Sobic006G142500 Sobic003G283600--Sobic006G142500 Sobic001G296100 Sobic001G296100 Sobic003G283600--Sobic001G296100 Sobic001G369800 Sobic001G369800 Sobic003G283600--Sobic001G369800 Sobic001G540700 Sobic001G540700 Sobic003G283600--Sobic001G540700 Sobic010G086000 Sobic010G086000 Sobic003G283600--Sobic010G086000 Sobic003G003700--Sobic001G468500 Sobic003G420100 Sobic003G420100 Sobic003G003700--Sobic003G420100 Sobic008G143000 Sobic008G143000 Sobic003G003700--Sobic008G143000 Sobic009G242501 Sobic009G242501 Sobic003G003700--Sobic009G242501 Sobic003G247600 Sobic003G247600 Sobic003G003700--Sobic003G247600 Sobic001G528600 Sobic001G528600 Sobic003G003700--Sobic001G528600 Sobic008G035900 Sobic008G035900 Sobic003G003700--Sobic008G035900 Sobic008G157000 Sobic008G157000 Sobic003G003700--Sobic008G157000 Sobic003G003700--Sobic004G286700 Sobic004G286700--Sobic003G420100 Sobic004G286700--Sobic001G468500 Sobic003G410600 Sobic003G410600 Sobic004G286700--Sobic003G410600 Sobic007G113300 Sobic007G113300 Sobic004G286700--Sobic007G113300 Sobic007G094400 Sobic007G094400 Sobic004G286700--Sobic007G094400 Sobic003G017500 Sobic003G017500 Sobic004G286700--Sobic003G017500 Sobic004G233700 Sobic004G233700 Sobic004G286700--Sobic004G233700 Sobic004G286700--Sobic009G242501 Sobic009G021700 Sobic009G021700 Sobic004G286700--Sobic009G021700 Sobic010G277300--Sobic007G094400 Sobic010G277300--Sobic001G468500 Sobic007G225400 Sobic007G225400 Sobic010G277300--Sobic007G225400 Sobic002G286700 Sobic002G286700 Sobic010G277300--Sobic002G286700 Sobic005G047100 Sobic005G047100 Sobic010G277300--Sobic005G047100 Sobic004G170900 Sobic004G170900 Sobic010G277300--Sobic004G170900 Sobic010G277300--Sobic004G286700 Sobic010G277300--Sobic009G242501 Sobic002G146601 Sobic002G146601 Sobic010G277300--Sobic002G146601 Sobic006G133700--Sobic001G030400 Sobic006G133700--Sobic001G468500 Sobic001G080200 Sobic001G080200 Sobic006G133700--Sobic001G080200 Sobic006G133700--Sobic003G283600 Sobic006G133700--Sobic004G036800 Sobic005G129700 Sobic005G129700 Sobic006G133700--Sobic005G129700 Sobic001G081100 Sobic001G081100 Sobic006G133700--Sobic001G081100 Sobic006G133700--Sobic001G369800 Sobic002G284100 Sobic002G284100 Sobic006G133700--Sobic002G284100 Sobic001G030400--Sobic006G133700 Sobic001G030400--Sobic001G468500 Sobic003G084300 Sobic003G084300 Sobic001G030400--Sobic003G084300 Sobic002G247800 Sobic002G247800 Sobic001G030400--Sobic002G247800 Sobic009G165500 Sobic009G165500 Sobic001G030400--Sobic009G165500 Sobic010G222100 Sobic010G222100 Sobic001G030400--Sobic010G222100 Sobic007G009000 Sobic007G009000 Sobic001G030400--Sobic007G009000 Sobic001G030400--Sobic004G331200 Sobic002G353200 Sobic002G353200 Sobic001G030400--Sobic002G353200 Sobic005G068800 Sobic005G068800 Sobic002G238500--Sobic005G068800 Sobic002G218600 Sobic002G218600 Sobic002G238500--Sobic002G218600 Sobic002G238500--Sobic001G468500 Sobic002G420500 Sobic002G420500 Sobic002G238500--Sobic002G420500 Sobic010G052400 Sobic010G052400 Sobic002G238500--Sobic010G052400 Sobic002G238500--Sobic007G113300 Sobic003G147500 Sobic003G147500 Sobic002G238500--Sobic003G147500 Sobic009G028100 Sobic009G028100 Sobic002G238500--Sobic009G028100 Sobic007G218100 Sobic007G218100 Sobic002G238500--Sobic007G218100 Sobic004G343600 Sobic004G343600 Sobic004G036800--Sobic004G343600 Sobic004G036800--Sobic001G468500 Sobic004G036800--Sobic006G133700 Sobic001G412500 Sobic001G412500 Sobic004G036800--Sobic001G412500 Sobic007G129000 Sobic007G129000 Sobic004G036800--Sobic007G129000 Sobic010G256200 Sobic010G256200 Sobic004G036800--Sobic010G256200 Sobic004G036800--Sobic001G369800 Sobic001G040300 Sobic001G040300 Sobic004G036800--Sobic001G040300 Sobic010G265900 Sobic010G265900 Sobic004G036800--Sobic010G265900 Sobic001G289900 Sobic001G289900 Sobic004G331200--Sobic001G289900 Sobic010G105400 Sobic010G105400 Sobic004G331200--Sobic010G105400 Sobic001G078600 Sobic001G078600 Sobic004G331200--Sobic001G078600 Sobic004G331200--Sobic001G528600 Sobic006G191700 Sobic006G191700 Sobic004G331200--Sobic006G191700 Sobic004G331200--Sobic001G468500 Sobic003G444300 Sobic003G444300 Sobic004G331200--Sobic003G444300 Sobic001G255600 Sobic001G255600 Sobic004G331200--Sobic001G255600 Sobic008G096200 Sobic008G096200 Sobic004G331200--Sobic008G096200
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.