Gene annotation
Transcriptome id Sobic.003G077500.1
Synonym Sb03g006540
Functional annotation expressed protein
UniProt C5XQ53
Pfam -
Panther DB PTHR31949 PTHR31949:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT2G40070 : -
RAP-DB (Rice) LOC_Os01g04880.1 : retrotransposon protein, putative, unclassified, expressed
MaizeGDB (Corn) Zm00025a035602 , Zm00025a023502
Brachypodium KQK02627
Barley HORVU3Hr1G010470.1 , HORVU3Hr1G010470.3 , HORVU3Hr1G010470.2 , HORVU3Hr1G010470.5 , HORVU3Hr1G010470.4 , HORVU3Hr1G010470.7 , HORVU3Hr1G010470.6 , HORVU3Hr1G010470.8
Wheat TraesCS3B02G067400 , TraesCS3A02G055100 , TraesCS3A02G055100 , TraesCS3D02G054400 , TraesCS3D02G054400
Populus -


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cDNA sequences
Sobic.003G077500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G315400 expressed protein -
2 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
3 Sobic.001G372900 expressed protein K08819: cyclin-dependent kinase 12/13
4 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
5 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3
6 Sobic.006G254500 IQ calmodulin-binding motif family protein, putative, expressed -
7 Sobic.001G367100 pleckstrin homology domain-containing protein, putative, expressed -
8 Sobic.004G315700 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E
9 Sobic.009G031500 agenet domain containing protein, putative, expressed -
10 Sobic.002G130900 zinc finger family protein, putative, expressed K18932: palmitoyltransferase
11 Sobic.001G487200 zinc finger, C3HC4 type domain containing protein, expressed K19045: E3 ubiquitin-protein ligase BIG BROTHER and related proteins
12 Sobic.001G385400 guanine nucleotide exchange factor, putative, expressed -
13 Sobic.002G002100 expressed protein -
14 Sobic.001G296800 WD repeat-containing protein 8, putative, expressed -
15 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
16 Sobic.001G157100 BTBN17 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with non-phototropic hypocotyl 3 NPH3 and coiled-coil domains, expressed -
17 Sobic.001G395200 cyclin-related protein, putative, expressed -
18 Sobic.001G346700 Ser/Thr protein phosphatase family protein, putative, expressed -
19 Sobic.009G212100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@IQ calmodulin-binding motif family protein, putative, expressed -
20 Sobic.006G084300 kinesin motor domain containing protein, putative, expressed K11498: centromeric protein E


Gene co-expression network
sample Sobic003G077500 Sobic003G077500 Sobic001G315400 Sobic001G315400 Sobic003G077500--Sobic001G315400 Sobic007G125700 Sobic007G125700 Sobic003G077500--Sobic007G125700 Sobic001G372900 Sobic001G372900 Sobic003G077500--Sobic001G372900 Sobic002G334600 Sobic002G334600 Sobic003G077500--Sobic002G334600 Sobic002G219900 Sobic002G219900 Sobic003G077500--Sobic002G219900 Sobic006G254500 Sobic006G254500 Sobic003G077500--Sobic006G254500 Sobic001G367100 Sobic001G367100 Sobic003G077500--Sobic001G367100 Sobic004G315700 Sobic004G315700 Sobic003G077500--Sobic004G315700 Sobic009G031500 Sobic009G031500 Sobic003G077500--Sobic009G031500 Sobic001G315400--Sobic001G367100 Sobic001G315400--Sobic003G077500 Sobic002G079100 Sobic002G079100 Sobic001G315400--Sobic002G079100 Sobic002G002100 Sobic002G002100 Sobic001G315400--Sobic002G002100 Sobic005G047300 Sobic005G047300 Sobic001G315400--Sobic005G047300 Sobic002G223300 Sobic002G223300 Sobic001G315400--Sobic002G223300 Sobic004G128200 Sobic004G128200 Sobic001G315400--Sobic004G128200 Sobic004G227500 Sobic004G227500 Sobic001G315400--Sobic004G227500 Sobic001G395200 Sobic001G395200 Sobic001G315400--Sobic001G395200 Sobic002G430900 Sobic002G430900 Sobic007G125700--Sobic002G430900 Sobic004G207000 Sobic004G207000 Sobic007G125700--Sobic004G207000 Sobic010G149600 Sobic010G149600 Sobic007G125700--Sobic010G149600 Sobic010G269300 Sobic010G269300 Sobic007G125700--Sobic010G269300 Sobic007G125700--Sobic002G219900 Sobic007G125700--Sobic003G077500 Sobic007G125700--Sobic001G395200 Sobic004G043750 Sobic004G043750 Sobic007G125700--Sobic004G043750 Sobic006G280100 Sobic006G280100 Sobic007G125700--Sobic006G280100 Sobic001G499200 Sobic001G499200 Sobic001G372900--Sobic001G499200 Sobic001G296100 Sobic001G296100 Sobic001G372900--Sobic001G296100 Sobic001G372900--Sobic003G077500 Sobic006G081500 Sobic006G081500 Sobic001G372900--Sobic006G081500 Sobic001G157100 Sobic001G157100 Sobic001G372900--Sobic001G157100 Sobic006G084300 Sobic006G084300 Sobic001G372900--Sobic006G084300 Sobic001G540700 Sobic001G540700 Sobic001G372900--Sobic001G540700 Sobic008G172200 Sobic008G172200 Sobic001G372900--Sobic008G172200 Sobic001G372900--Sobic002G334600 Sobic002G334600--Sobic002G223300 Sobic009G030300 Sobic009G030300 Sobic002G334600--Sobic009G030300 Sobic007G139400 Sobic007G139400 Sobic002G334600--Sobic007G139400 Sobic007G188900 Sobic007G188900 Sobic002G334600--Sobic007G188900 Sobic003G132700 Sobic003G132700 Sobic002G334600--Sobic003G132700 Sobic002G089900 Sobic002G089900 Sobic002G334600--Sobic002G089900 Sobic003G354100 Sobic003G354100 Sobic002G334600--Sobic003G354100 Sobic009G044900 Sobic009G044900 Sobic002G334600--Sobic009G044900 Sobic002G157200 Sobic002G157200 Sobic002G334600--Sobic002G157200 Sobic002G219900--Sobic002G430900 Sobic002G219900--Sobic010G149600 Sobic002G219900--Sobic007G125700 Sobic002G219900--Sobic001G395200 Sobic002G219900--Sobic006G280100 Sobic003G361400 Sobic003G361400 Sobic002G219900--Sobic003G361400 Sobic001G143600 Sobic001G143600 Sobic002G219900--Sobic001G143600 Sobic003G274400 Sobic003G274400 Sobic002G219900--Sobic003G274400 Sobic003G027800 Sobic003G027800 Sobic002G219900--Sobic003G027800 Sobic006G267500 Sobic006G267500 Sobic006G254500--Sobic006G267500 Sobic009G212100 Sobic009G212100 Sobic006G254500--Sobic009G212100 Sobic006G254500--Sobic004G315700 Sobic002G393200 Sobic002G393200 Sobic006G254500--Sobic002G393200 Sobic007G166800 Sobic007G166800 Sobic006G254500--Sobic007G166800 Sobic001G285200 Sobic001G285200 Sobic006G254500--Sobic001G285200 Sobic006G254500--Sobic003G077500 Sobic001G487200 Sobic001G487200 Sobic006G254500--Sobic001G487200 Sobic009G206500 Sobic009G206500 Sobic006G254500--Sobic009G206500 Sobic010G279900 Sobic010G279900 Sobic001G367100--Sobic010G279900 Sobic001G367100--Sobic001G315400 Sobic001G245900 Sobic001G245900 Sobic001G367100--Sobic001G245900 Sobic003G023400 Sobic003G023400 Sobic001G367100--Sobic003G023400 Sobic008G080500 Sobic008G080500 Sobic001G367100--Sobic008G080500 Sobic009G151200 Sobic009G151200 Sobic001G367100--Sobic009G151200 Sobic001G367100--Sobic004G128200 Sobic001G367100--Sobic002G079100 Sobic001G367100--Sobic003G077500 Sobic004G315700--Sobic001G487200 Sobic004G315700--Sobic009G212100 Sobic001G296800 Sobic001G296800 Sobic004G315700--Sobic001G296800 Sobic009G052100 Sobic009G052100 Sobic004G315700--Sobic009G052100 Sobic004G315700--Sobic006G084300 Sobic003G420300 Sobic003G420300 Sobic004G315700--Sobic003G420300 Sobic006G218900 Sobic006G218900 Sobic004G315700--Sobic006G218900 Sobic003G345000 Sobic003G345000 Sobic004G315700--Sobic003G345000 Sobic004G315700--Sobic001G540700 Sobic009G031500--Sobic004G207000 Sobic009G031500--Sobic001G540700 Sobic006G126600 Sobic006G126600 Sobic009G031500--Sobic006G126600 Sobic009G031500--Sobic007G125700 Sobic009G031500--Sobic001G487200 Sobic009G031500--Sobic003G274400 Sobic009G031500--Sobic003G077500 Sobic004G206300 Sobic004G206300 Sobic009G031500--Sobic004G206300 Sobic009G031500--Sobic003G027800
Octagon: transcription factors


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