Gene annotation
Transcriptome id Sobic.002G341200.1
Synonym Sb02g036540, SRF3
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
STRUBBELIG-RECEPTOR FAMILY 1 precursor, putative, expressed
UniProt A0A1B6QF13
Pfam PF08263 PF13855 PF00069
Panther DB PTHR27001 PTHR27001:SF121
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0005515; protein binding GO:0006468protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT4G03390 : STRUBBELIG-receptor family 3
RAP-DB (Rice) LOC_Os07g37810.1 : STRUBBELIG-RECEPTOR FAMILY 1 precursor, putative, expressed
MaizeGDB (Corn) Zm00025a048409
Brachypodium KQK15717 , KQK15718
Barley HORVU2Hr1G039960.15 , HORVU2Hr1G039960.2 , HORVU2Hr1G039960.8 , HORVU2Hr1G039960.7 , HORVU2Hr1G039960.6 , HORVU2Hr1G039960.3 , HORVU2Hr1G039960.1 , HORVU2Hr1G039960.13 , HORVU2Hr1G039960.12 , HORVU2Hr1G039960.11 , HORVU2Hr1G039960.10 , HORVU2Hr1G039960.16 , HORVU2Hr1G039960.14 , HORVU2Hr1G039960.5 , HORVU2Hr1G039960.4
Wheat TraesCS2A02G202600 , TraesCS2D02G213100 , TraesCS2D02G213100 , TraesCS2D02G213100 , TraesCS2B02G229600 , TraesCS2B02G229600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G315400 expressed protein -
2 Sobic.002G050500 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -
3 Sobic.001G372900 expressed protein K08819: cyclin-dependent kinase 12/13
4 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
5 Sobic.004G289500 - -
6 Sobic.001G395200 cyclin-related protein, putative, expressed -
7 Sobic.003G077500 expressed protein -
8 Sobic.009G213100 beta-galactosidase 8 precursor, putative, expressed K12309: GLB1, beta-galactosidase
9 Sobic.001G346700 Ser/Thr protein phosphatase family protein, putative, expressed -
10 Sobic.006G217200 PPR repeat domain containing protein, putative, expressed -
11 Sobic.002G079100 histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH1, putative, expressed K11420: [histone H3]-lysine9 N-trimethyltransferase EHMT
12 Sobic.004G227500 WD-40 repeat family protein, putative, expressed -
13 Sobic.009G151200 expressed protein -
14 Sobic.001G367100 pleckstrin homology domain-containing protein, putative, expressed -
15 Sobic.004G144100 - -
16 Sobic.002G002100 expressed protein -
17 Sobic.002G148400 histone-lysine N-methyltransferase, H3 lysine-4 specific ATX1, putative, expressed -
18 Sobic.002G140800 RNA pseudouridine synthase, putative, expressed -
19 Sobic.002G177400 expressed protein -
20 Sobic.003G107900 phosphoesterase family protein, putative, expressed K01114: phospholipase C


Gene co-expression network
sample Sobic002G341200 Sobic002G341200 Sobic001G315400 Sobic001G315400 Sobic002G341200--Sobic001G315400 Sobic002G050500 Sobic002G050500 Sobic002G341200--Sobic002G050500 Sobic001G372900 Sobic001G372900 Sobic002G341200--Sobic001G372900 Sobic002G223300 Sobic002G223300 Sobic002G341200--Sobic002G223300 Sobic004G289500 Sobic004G289500 Sobic002G341200--Sobic004G289500 Sobic001G395200 Sobic001G395200 Sobic002G341200--Sobic001G395200 Sobic003G077500 Sobic003G077500 Sobic002G341200--Sobic003G077500 Sobic009G213100 Sobic009G213100 Sobic002G341200--Sobic009G213100 Sobic001G346700 Sobic001G346700 Sobic002G341200--Sobic001G346700 Sobic001G367100 Sobic001G367100 Sobic001G315400--Sobic001G367100 Sobic001G315400--Sobic003G077500 Sobic002G079100 Sobic002G079100 Sobic001G315400--Sobic002G079100 Sobic002G002100 Sobic002G002100 Sobic001G315400--Sobic002G002100 Sobic005G047300 Sobic005G047300 Sobic001G315400--Sobic005G047300 Sobic001G315400--Sobic002G223300 Sobic004G128200 Sobic004G128200 Sobic001G315400--Sobic004G128200 Sobic004G227500 Sobic004G227500 Sobic001G315400--Sobic004G227500 Sobic001G315400--Sobic001G395200 Sobic006G210200 Sobic006G210200 Sobic002G050500--Sobic006G210200 Sobic001G268700 Sobic001G268700 Sobic002G050500--Sobic001G268700 Sobic002G140800 Sobic002G140800 Sobic002G050500--Sobic002G140800 Sobic008G056350 Sobic008G056350 Sobic002G050500--Sobic008G056350 Sobic001G045700 Sobic001G045700 Sobic002G050500--Sobic001G045700 Sobic002G060450 Sobic002G060450 Sobic002G050500--Sobic002G060450 Sobic001G454301 Sobic001G454301 Sobic002G050500--Sobic001G454301 Sobic002G050500--Sobic002G223300 Sobic003G128600 Sobic003G128600 Sobic002G050500--Sobic003G128600 Sobic001G499200 Sobic001G499200 Sobic001G372900--Sobic001G499200 Sobic001G296100 Sobic001G296100 Sobic001G372900--Sobic001G296100 Sobic001G372900--Sobic003G077500 Sobic006G081500 Sobic006G081500 Sobic001G372900--Sobic006G081500 Sobic001G157100 Sobic001G157100 Sobic001G372900--Sobic001G157100 Sobic006G084300 Sobic006G084300 Sobic001G372900--Sobic006G084300 Sobic001G540700 Sobic001G540700 Sobic001G372900--Sobic001G540700 Sobic008G172200 Sobic008G172200 Sobic001G372900--Sobic008G172200 Sobic002G334600 Sobic002G334600 Sobic001G372900--Sobic002G334600 Sobic002G223300--Sobic002G334600 Sobic004G085300 Sobic004G085300 Sobic002G223300--Sobic004G085300 Sobic009G151200 Sobic009G151200 Sobic002G223300--Sobic009G151200 Sobic003G132700 Sobic003G132700 Sobic002G223300--Sobic003G132700 Sobic007G046900 Sobic007G046900 Sobic002G223300--Sobic007G046900 Sobic004G285000 Sobic004G285000 Sobic002G223300--Sobic004G285000 Sobic002G223300--Sobic006G210200 Sobic002G223300--Sobic002G050500 Sobic002G339800 Sobic002G339800 Sobic002G223300--Sobic002G339800 Sobic006G269600 Sobic006G269600 Sobic004G289500--Sobic006G269600 Sobic002G073300 Sobic002G073300 Sobic004G289500--Sobic002G073300 Sobic004G289500--Sobic002G140800 Sobic010G139301 Sobic010G139301 Sobic004G289500--Sobic010G139301 Sobic004G286900 Sobic004G286900 Sobic004G289500--Sobic004G286900 Sobic006G063300 Sobic006G063300 Sobic004G289500--Sobic006G063300 Sobic004G193800 Sobic004G193800 Sobic004G289500--Sobic004G193800 Sobic004G289500--Sobic002G050500 Sobic008G086200 Sobic008G086200 Sobic004G289500--Sobic008G086200 Sobic003G104100 Sobic003G104100 Sobic001G395200--Sobic003G104100 Sobic009G259900 Sobic009G259900 Sobic001G395200--Sobic009G259900 Sobic002G219900 Sobic002G219900 Sobic001G395200--Sobic002G219900 Sobic010G149600 Sobic010G149600 Sobic001G395200--Sobic010G149600 Sobic003G351900 Sobic003G351900 Sobic001G395200--Sobic003G351900 Sobic006G008300 Sobic006G008300 Sobic001G395200--Sobic006G008300 Sobic007G125700 Sobic007G125700 Sobic001G395200--Sobic007G125700 Sobic004G043750 Sobic004G043750 Sobic001G395200--Sobic004G043750 Sobic001G079900 Sobic001G079900 Sobic001G395200--Sobic001G079900 Sobic003G077500--Sobic001G315400 Sobic003G077500--Sobic007G125700 Sobic003G077500--Sobic001G372900 Sobic003G077500--Sobic002G334600 Sobic003G077500--Sobic002G219900 Sobic006G254500 Sobic006G254500 Sobic003G077500--Sobic006G254500 Sobic003G077500--Sobic001G367100 Sobic004G315700 Sobic004G315700 Sobic003G077500--Sobic004G315700 Sobic009G031500 Sobic009G031500 Sobic003G077500--Sobic009G031500 Sobic002G409800 Sobic002G409800 Sobic009G213100--Sobic002G409800 Sobic002G076000 Sobic002G076000 Sobic009G213100--Sobic002G076000 Sobic001G507900 Sobic001G507900 Sobic009G213100--Sobic001G507900 Sobic001G017600 Sobic001G017600 Sobic009G213100--Sobic001G017600 Sobic009G062900 Sobic009G062900 Sobic009G213100--Sobic009G062900 Sobic003G070100 Sobic003G070100 Sobic009G213100--Sobic003G070100 Sobic009G213100--Sobic002G079100 Sobic006G215050 Sobic006G215050 Sobic009G213100--Sobic006G215050 Sobic006G217200 Sobic006G217200 Sobic009G213100--Sobic006G217200 Sobic009G129600 Sobic009G129600 Sobic001G346700--Sobic009G129600 Sobic004G347100 Sobic004G347100 Sobic001G346700--Sobic004G347100 Sobic003G415100 Sobic003G415100 Sobic001G346700--Sobic003G415100 Sobic003G354100 Sobic003G354100 Sobic001G346700--Sobic003G354100 Sobic007G188900 Sobic007G188900 Sobic001G346700--Sobic007G188900 Sobic002G148400 Sobic002G148400 Sobic001G346700--Sobic002G148400 Sobic007G139400 Sobic007G139400 Sobic001G346700--Sobic007G139400 Sobic002G268900 Sobic002G268900 Sobic001G346700--Sobic002G268900 Sobic001G346700--Sobic002G334600
Octagon: transcription factors


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