Gene annotation
Transcriptome id Sobic.002G140800.3,Sobic.002G140800.2,Sobic.002G140800.1
Synonym
Functional annotation RNA pseudouridine synthase, putative, expressed
UniProt A0A1B6QB51 , A0A1W0W3U8 , A0A1W0W3Y7
Pfam PF00849
Panther DB PTHR11079 PTHR11079:SF58
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009982; pseudouridine synthase activity GO:0009451RNA modification GO:0003723RNA binding GO:0001522pseudouridine synthesis


Orthologs (automatic annotation)
TAIR AT3G19440 : Pseudouridine synthase family protein
RAP-DB (Rice) LOC_Os09g01620.1 : RNA pseudouridine synthase, putative, expressed
MaizeGDB (Corn) Zm00025a046008
Brachypodium KQJ86879 , KQJ86878 , KQJ86875 , KQJ86877 , KQJ86876 , KQJ86874
Barley HORVU5Hr1G049690.27 , HORVU5Hr1G049690.38 , HORVU5Hr1G049690.37 , HORVU5Hr1G049690.31 , HORVU5Hr1G049690.35 , HORVU5Hr1G049690.34 , HORVU5Hr1G049690.33 , HORVU5Hr1G049690.32 , HORVU5Hr1G049690.30 , HORVU5Hr1G049690.28 , HORVU5Hr1G049690.29 , HORVU5Hr1G049690.24 , HORVU5Hr1G049690.25 , HORVU5Hr1G049690.26 , HORVU5Hr1G049690.20 , HORVU5Hr1G049690.22 , HORVU5Hr1G049690.23 , HORVU5Hr1G049690.11 , HORVU5Hr1G049690.10 , HORVU5Hr1G049690.13 , HORVU5Hr1G049690.15 , HORVU5Hr1G049690.14 , HORVU5Hr1G049690.17 , HORVU5Hr1G049690.16 , HORVU5Hr1G049690.19 , HORVU5Hr1G049690.18 , HORVU5Hr1G049690.5 , HORVU5Hr1G049690.4 , HORVU5Hr1G049690.7 , HORVU5Hr1G049690.1 , HORVU5Hr1G049690.3 , HORVU5Hr1G049690.2 , HORVU5Hr1G049690.9 , HORVU5Hr1G049690.8
Wheat TraesCS5B02G157000 , TraesCS5B02G157000 , TraesCS5D02G164300 , TraesCS5D02G164300 , TraesCS5D02G164300 , TraesCS5A02G159200 , TraesCS5A02G159200
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G454301 - -
2 Sobic.003G128600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DNAJ heat shock N-terminal domain-containing protein, putative, expressed K09527: DnaJ homolog subfamily C member 7
3 Sobic.004G169501 - -
4 Sobic.007G116400 - -
5 Sobic.004G088400 GTPase-activating protein, putative, expressed -
6 Sobic.002G050500 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -
7 Sobic.010G139301 - -
8 Sobic.008G117200 RING finger and CHY zinc finger domain-containing protein 1, putative, expressed K10144: RCHY1, RING finger and CHY zinc finger domain-containing protein 1
9 Sobic.009G059600 KIP1, putative, expressed -
10 Sobic.008G068800 cytokinin inducible protein, putative, expressed -
11 Sobic.006G129700 amine oxidase, flavin-containing, domain containing protein, expressed K00231: PPOX, protoporphyrinogen/coproporphyrinogen III oxidase
12 Sobic.002G421700 OsFBX368 - F-box domain containing protein, expressed -
13 Sobic.002G073300 - -
14 Sobic.006G217200 PPR repeat domain containing protein, putative, expressed -
15 Sobic.002G177400 expressed protein -
16 Sobic.004G286900 - -
17 Sobic.003G323900 - -
18 Sobic.003G185250 - -
19 Sobic.003G315332 - K15421: secretion-regulating guanine nucleotide exchange factor
20 Sobic.004G289500 - -


Gene co-expression network
sample Sobic002G140800 Sobic002G140800 Sobic001G454301 Sobic001G454301 Sobic002G140800--Sobic001G454301 Sobic003G128600 Sobic003G128600 Sobic002G140800--Sobic003G128600 Sobic004G169501 Sobic004G169501 Sobic002G140800--Sobic004G169501 Sobic007G116400 Sobic007G116400 Sobic002G140800--Sobic007G116400 Sobic004G088400 Sobic004G088400 Sobic002G140800--Sobic004G088400 Sobic002G050500 Sobic002G050500 Sobic002G140800--Sobic002G050500 Sobic010G139301 Sobic010G139301 Sobic002G140800--Sobic010G139301 Sobic008G117200 Sobic008G117200 Sobic002G140800--Sobic008G117200 Sobic009G059600 Sobic009G059600 Sobic002G140800--Sobic009G059600 Sobic001G454301--Sobic007G116400 Sobic002G421700 Sobic002G421700 Sobic001G454301--Sobic002G421700 Sobic001G454301--Sobic008G117200 Sobic001G094000 Sobic001G094000 Sobic001G454301--Sobic001G094000 Sobic009G104300 Sobic009G104300 Sobic001G454301--Sobic009G104300 Sobic009G239351 Sobic009G239351 Sobic001G454301--Sobic009G239351 Sobic001G303675 Sobic001G303675 Sobic001G454301--Sobic001G303675 Sobic001G454301--Sobic002G140800 Sobic006G217200 Sobic006G217200 Sobic001G454301--Sobic006G217200 Sobic003G128600--Sobic009G059600 Sobic003G128600--Sobic004G169501 Sobic003G015000 Sobic003G015000 Sobic003G128600--Sobic003G015000 Sobic003G128600--Sobic002G140800 Sobic004G286900 Sobic004G286900 Sobic003G128600--Sobic004G286900 Sobic009G257300 Sobic009G257300 Sobic003G128600--Sobic009G257300 Sobic004G164600 Sobic004G164600 Sobic003G128600--Sobic004G164600 Sobic008G068800 Sobic008G068800 Sobic003G128600--Sobic008G068800 Sobic003G128600--Sobic008G117200 Sobic003G315332 Sobic003G315332 Sobic004G169501--Sobic003G315332 Sobic007G142050 Sobic007G142050 Sobic004G169501--Sobic007G142050 Sobic004G169501--Sobic008G068800 Sobic004G169501--Sobic007G116400 Sobic004G169501--Sobic008G117200 Sobic003G204000 Sobic003G204000 Sobic004G169501--Sobic003G204000 Sobic001G267233 Sobic001G267233 Sobic004G169501--Sobic001G267233 Sobic002G181450 Sobic002G181450 Sobic004G169501--Sobic002G181450 Sobic007G089600 Sobic007G089600 Sobic004G169501--Sobic007G089600 Sobic007G116400--Sobic001G094000 Sobic007G116400--Sobic001G454301 Sobic007G116400--Sobic009G104300 Sobic007G116400--Sobic008G068800 Sobic007G116400--Sobic008G117200 Sobic006G080300 Sobic006G080300 Sobic007G116400--Sobic006G080300 Sobic007G116400--Sobic004G169501 Sobic001G477800 Sobic001G477800 Sobic007G116400--Sobic001G477800 Sobic007G116400--Sobic009G239351 Sobic002G177400 Sobic002G177400 Sobic004G088400--Sobic002G177400 Sobic007G008800 Sobic007G008800 Sobic004G088400--Sobic007G008800 Sobic003G336800 Sobic003G336800 Sobic004G088400--Sobic003G336800 Sobic004G088400--Sobic008G117200 Sobic003G026300 Sobic003G026300 Sobic004G088400--Sobic003G026300 Sobic003G346000 Sobic003G346000 Sobic004G088400--Sobic003G346000 Sobic008G129700 Sobic008G129700 Sobic004G088400--Sobic008G129700 Sobic004G088400--Sobic007G116400 Sobic009G030300 Sobic009G030300 Sobic004G088400--Sobic009G030300 Sobic006G210200 Sobic006G210200 Sobic002G050500--Sobic006G210200 Sobic001G268700 Sobic001G268700 Sobic002G050500--Sobic001G268700 Sobic002G050500--Sobic002G140800 Sobic008G056350 Sobic008G056350 Sobic002G050500--Sobic008G056350 Sobic001G045700 Sobic001G045700 Sobic002G050500--Sobic001G045700 Sobic002G060450 Sobic002G060450 Sobic002G050500--Sobic002G060450 Sobic002G050500--Sobic001G454301 Sobic002G223300 Sobic002G223300 Sobic002G050500--Sobic002G223300 Sobic002G050500--Sobic003G128600 Sobic010G139301--Sobic007G089600 Sobic006G068400 Sobic006G068400 Sobic010G139301--Sobic006G068400 Sobic010G139301--Sobic007G142050 Sobic010G139301--Sobic004G169501 Sobic003G323900 Sobic003G323900 Sobic010G139301--Sobic003G323900 Sobic002G073300 Sobic002G073300 Sobic010G139301--Sobic002G073300 Sobic002G182300 Sobic002G182300 Sobic010G139301--Sobic002G182300 Sobic005G099150 Sobic005G099150 Sobic010G139301--Sobic005G099150 Sobic010G139301--Sobic008G068800 Sobic010G263800 Sobic010G263800 Sobic008G117200--Sobic010G263800 Sobic008G034600 Sobic008G034600 Sobic008G117200--Sobic008G034600 Sobic008G117200--Sobic001G094000 Sobic008G117200--Sobic004G088400 Sobic008G117200--Sobic002G177400 Sobic008G117200--Sobic002G421700 Sobic008G117200--Sobic007G116400 Sobic007G011400 Sobic007G011400 Sobic008G117200--Sobic007G011400 Sobic008G117200--Sobic001G477800 Sobic009G059600--Sobic004G164600 Sobic007G099500 Sobic007G099500 Sobic009G059600--Sobic007G099500 Sobic004G212800 Sobic004G212800 Sobic009G059600--Sobic004G212800 Sobic007G073400 Sobic007G073400 Sobic009G059600--Sobic007G073400 Sobic009G059600--Sobic008G068800 Sobic009G059600--Sobic003G128600 Sobic003G424100 Sobic003G424100 Sobic009G059600--Sobic003G424100 Sobic009G059600--Sobic007G142050 Sobic004G076732 Sobic004G076732 Sobic009G059600--Sobic004G076732
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.