Gene annotation
Transcriptome id Sobic.002G223300.1
Synonym
Functional annotation nucleoporin p58/p45, putative, expressed
UniProt A0A1B6QCX2
Pfam PF15967
Panther DB PTHR13437
NCBI CDD -
KEGG Orthology K14307; NUPL1, nucleoporin p58/p45
Gene Ontology GO:0006913; nucleocytoplasmic transport GO:0005643nuclear pore


Orthologs (automatic annotation)
TAIR AT4G37130 : hydroxyproline-rich glycoprotein family protein
RAP-DB (Rice) LOC_Os09g28019.1 : nucleoporin p58/p45, putative, expressed
MaizeGDB (Corn) Zm00025a047231 , Zm00025a014034
Brachypodium PNT64711 , KQJ90494
Barley HORVU5Hr1G097670.3 , HORVU5Hr1G097670.8 , HORVU5Hr1G097670.9 , HORVU5Hr1G097670.4 , HORVU5Hr1G097670.5 , HORVU5Hr1G097670.6 , HORVU5Hr1G097670.1 , HORVU5Hr1G097670.2 , HORVU5Hr1G097670.18 , HORVU5Hr1G097670.16 , HORVU5Hr1G097670.17 , HORVU5Hr1G097670.14 , HORVU5Hr1G097670.15 , HORVU5Hr1G097670.12 , HORVU5Hr1G097670.13 , HORVU5Hr1G097670.10 , HORVU5Hr1G097670.11 , HORVU5Hr1G067790.1 , HORVU5Hr1G067790.2 , HORVU5Hr1G067790.3 , HORVU5Hr1G067790.5 , HORVU5Hr1G067790.6 , HORVU5Hr1G067790.7 , HORVU5Hr1G067790.4 , HORVU5Hr1G097670.20
Wheat TraesCS5B02G234200 , TraesCS5A02G402200 , TraesCS5D02G242900 , TraesCS5B02G406900 , TraesCS5A02G235800
Populus -


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cDNA sequences
Sobic.002G223300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
2 Sobic.004G085300 Sel1 repeat domain containing protein, putative, expressed -
3 Sobic.009G151200 expressed protein -
4 Sobic.003G132700 OsFBX237 - F-box domain containing protein, expressed -
5 Sobic.007G046900 MBTB32 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
6 Sobic.004G285000 MT-A70 domain containing protein, expressed K05925: mRNA m6A methyltransferase catalytic subunit
7 Sobic.006G210200 zinc finger domain, LSD1 subclass family protein, expressed -
8 Sobic.002G050500 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -
9 Sobic.002G339800 B3 DNA binding domain containing protein, putative, expressed -
10 Sobic.003G140900 OsFBL33 - F-box domain and LRR containing protein, expressed -
11 Sobic.009G192500 OsFBX169 - F-box domain containing protein, expressed -
12 Sobic.003G343600 zinc finger, C3HC4 type domain containing protein, expressed -
13 Sobic.002G089900 OsFBX237 - F-box domain containing protein, expressed -
14 Sobic.003G433500 Putative splicing factor(PubMedID : 24356560)@serine/arginine repetitive matrix protein 1, putative, expressed K14325: RNA-binding protein with serine-rich domain 1
15 Sobic.002G430900 PWWP domain containing protein, expressed -
16 Sobic.001G315400 expressed protein -
17 Sobic.001G217100 double-stranded RNA binding motif containing protein, expressed -
18 Sobic.002G259800 hydroxyproline-rich glycoprotein family protein, putative, expressed -
19 Sobic.005G009200 expressed protein -
20 Sobic.002G177500 expressed protein -


Gene co-expression network
sample Sobic002G223300 Sobic002G223300 Sobic002G334600 Sobic002G334600 Sobic002G223300--Sobic002G334600 Sobic004G085300 Sobic004G085300 Sobic002G223300--Sobic004G085300 Sobic009G151200 Sobic009G151200 Sobic002G223300--Sobic009G151200 Sobic003G132700 Sobic003G132700 Sobic002G223300--Sobic003G132700 Sobic007G046900 Sobic007G046900 Sobic002G223300--Sobic007G046900 Sobic004G285000 Sobic004G285000 Sobic002G223300--Sobic004G285000 Sobic006G210200 Sobic006G210200 Sobic002G223300--Sobic006G210200 Sobic002G050500 Sobic002G050500 Sobic002G223300--Sobic002G050500 Sobic002G339800 Sobic002G339800 Sobic002G223300--Sobic002G339800 Sobic002G334600--Sobic002G223300 Sobic009G030300 Sobic009G030300 Sobic002G334600--Sobic009G030300 Sobic007G139400 Sobic007G139400 Sobic002G334600--Sobic007G139400 Sobic007G188900 Sobic007G188900 Sobic002G334600--Sobic007G188900 Sobic002G334600--Sobic003G132700 Sobic002G089900 Sobic002G089900 Sobic002G334600--Sobic002G089900 Sobic003G354100 Sobic003G354100 Sobic002G334600--Sobic003G354100 Sobic009G044900 Sobic009G044900 Sobic002G334600--Sobic009G044900 Sobic002G157200 Sobic002G157200 Sobic002G334600--Sobic002G157200 Sobic004G085300--Sobic009G151200 Sobic004G085300--Sobic002G223300 Sobic001G522400 Sobic001G522400 Sobic004G085300--Sobic001G522400 Sobic002G268900 Sobic002G268900 Sobic004G085300--Sobic002G268900 Sobic004G086200 Sobic004G086200 Sobic004G085300--Sobic004G086200 Sobic002G421700 Sobic002G421700 Sobic004G085300--Sobic002G421700 Sobic002G259800 Sobic002G259800 Sobic004G085300--Sobic002G259800 Sobic004G085300--Sobic004G285000 Sobic004G085300--Sobic006G210200 Sobic006G248500 Sobic006G248500 Sobic009G151200--Sobic006G248500 Sobic009G151200--Sobic002G259800 Sobic005G133500 Sobic005G133500 Sobic009G151200--Sobic005G133500 Sobic009G151200--Sobic004G285000 Sobic001G424600 Sobic001G424600 Sobic009G151200--Sobic001G424600 Sobic009G151200--Sobic004G085300 Sobic008G100100 Sobic008G100100 Sobic009G151200--Sobic008G100100 Sobic009G151200--Sobic004G086200 Sobic004G156500 Sobic004G156500 Sobic009G151200--Sobic004G156500 Sobic009G192500 Sobic009G192500 Sobic003G132700--Sobic009G192500 Sobic003G132700--Sobic003G354100 Sobic007G117100 Sobic007G117100 Sobic003G132700--Sobic007G117100 Sobic003G132700--Sobic002G089900 Sobic002G014700 Sobic002G014700 Sobic003G132700--Sobic002G014700 Sobic003G132700--Sobic002G223300 Sobic003G132700--Sobic002G334600 Sobic003G433500 Sobic003G433500 Sobic003G132700--Sobic003G433500 Sobic001G507400 Sobic001G507400 Sobic003G132700--Sobic001G507400 Sobic004G078100 Sobic004G078100 Sobic007G046900--Sobic004G078100 Sobic002G060450 Sobic002G060450 Sobic007G046900--Sobic002G060450 Sobic007G046900--Sobic002G223300 Sobic002G018600 Sobic002G018600 Sobic007G046900--Sobic002G018600 Sobic001G215400 Sobic001G215400 Sobic007G046900--Sobic001G215400 Sobic002G095700 Sobic002G095700 Sobic007G046900--Sobic002G095700 Sobic009G239301 Sobic009G239301 Sobic007G046900--Sobic009G239301 Sobic007G046900--Sobic002G089900 Sobic007G046900--Sobic003G433500 Sobic004G285000--Sobic004G086200 Sobic004G111000 Sobic004G111000 Sobic004G285000--Sobic004G111000 Sobic001G346900 Sobic001G346900 Sobic004G285000--Sobic001G346900 Sobic003G427100 Sobic003G427100 Sobic004G285000--Sobic003G427100 Sobic004G285000--Sobic009G151200 Sobic010G215900 Sobic010G215900 Sobic004G285000--Sobic010G215900 Sobic003G409200 Sobic003G409200 Sobic004G285000--Sobic003G409200 Sobic007G044100 Sobic007G044100 Sobic004G285000--Sobic007G044100 Sobic001G013300 Sobic001G013300 Sobic004G285000--Sobic001G013300 Sobic006G210200--Sobic002G050500 Sobic001G454301 Sobic001G454301 Sobic006G210200--Sobic001G454301 Sobic002G151600 Sobic002G151600 Sobic006G210200--Sobic002G151600 Sobic003G023400 Sobic003G023400 Sobic006G210200--Sobic003G023400 Sobic006G210200--Sobic002G157200 Sobic003G185250 Sobic003G185250 Sobic006G210200--Sobic003G185250 Sobic006G210200--Sobic002G060450 Sobic001G303675 Sobic001G303675 Sobic006G210200--Sobic001G303675 Sobic009G239351 Sobic009G239351 Sobic006G210200--Sobic009G239351 Sobic002G050500--Sobic006G210200 Sobic001G268700 Sobic001G268700 Sobic002G050500--Sobic001G268700 Sobic002G140800 Sobic002G140800 Sobic002G050500--Sobic002G140800 Sobic008G056350 Sobic008G056350 Sobic002G050500--Sobic008G056350 Sobic001G045700 Sobic001G045700 Sobic002G050500--Sobic001G045700 Sobic002G050500--Sobic002G060450 Sobic002G050500--Sobic001G454301 Sobic002G050500--Sobic002G223300 Sobic003G128600 Sobic003G128600 Sobic002G050500--Sobic003G128600 Sobic002G339800--Sobic002G223300 Sobic002G177500 Sobic002G177500 Sobic002G339800--Sobic002G177500 Sobic002G017900 Sobic002G017900 Sobic002G339800--Sobic002G017900 Sobic002G263200 Sobic002G263200 Sobic002G339800--Sobic002G263200 Sobic009G045300 Sobic009G045300 Sobic002G339800--Sobic009G045300 Sobic002G339800--Sobic001G013300 Sobic002G339800--Sobic004G285000 Sobic001G168100 Sobic001G168100 Sobic002G339800--Sobic001G168100 Sobic010G063566 Sobic010G063566 Sobic002G339800--Sobic010G063566
Octagon: transcription factors


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