Gene annotation
Transcriptome id Sobic.003G107900.1
Synonym Sb03g009070, NPC6
Functional annotation phosphoesterase family protein, putative, expressed
UniProt A0A1B6Q2I7
Pfam PF04185
Panther DB PTHR31956 PTHR31956:SF2
NCBI CDD -
KEGG Orthology K01114; phospholipase C
Gene Ontology GO:0016788; hydrolase activity, acting on ester bonds


Orthologs (automatic annotation)
TAIR AT3G48610 : non-specific phospholipase C6
RAP-DB (Rice) LOC_Os01g01190.1 : phosphoesterase family protein, putative, expressed
MaizeGDB (Corn) Zm00025a023855 , Zm00025a025938 , Zm00025a009080
Brachypodium KQK02781 , KQK12039
Barley HORVU1Hr1G085090.2 , HORVU1Hr1G085090.1 , HORVU3Hr1G109160.4 , HORVU3Hr1G109160.5 , HORVU3Hr1G109160.2 , HORVU3Hr1G014970.1
Wheat TraesCS3A02G083200 , TraesCS4B02G015300 , TraesCS3D02G499600 , TraesCS3D02G499600 , TraesCS3B02G553200 , TraesCS3B02G552800 , TraesCS3B02G098100 , TraesCS3A02G492100 , TraesCS3D02G083000
Populus -


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cDNA sequences
Sobic.003G107900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G268700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lysosomal alpha-mannosidase precursor, putative, expressed K01191: alpha-mannosidase
2 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
3 Sobic.003G244700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
4 Sobic.001G372900 expressed protein K08819: cyclin-dependent kinase 12/13
5 Sobic.010G013500 growth-regulating factor, putative, expressed -
6 Sobic.008G172200 CIN-like (ClassII) Subclade 12 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
7 Sobic.002G341200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@STRUBBELIG-RECEPTOR FAMILY 1 precursor, putative, expressed -
8 Sobic.004G189700 OsFBL33 - F-box domain and LRR containing protein, expressed -
9 Sobic.006G073100 protein phosphatase 2C, putative, expressed -
10 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
11 Sobic.002G050500 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -
12 Sobic.010G235500 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
13 Sobic.003G412100 aspartokinase 3, chloroplast precursor, putative, expressed K00928: aspartate kinase
14 Sobic.001G065300 GRF zinc finger family protein, expressed -
15 Sobic.006G022500 OsFBD9 - F-box and FBD domain containing protein, expressed -
16 Sobic.010G221200 neurochondrin family protein, putative, expressed -
17 Sobic.005G177900 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
18 Sobic.007G198800 BTB/POZ domain containing protein, expressed K10523: speckle-type POZ protein
19 Sobic.009G088600 expressed protein -
20 Sobic.005G120600 Highest expression level in embryo(PubMedID : 27501690)@OsSPL19 - SBP-box gene family member, expressed -


Gene co-expression network
sample Sobic003G107900 Sobic003G107900 Sobic001G268700 Sobic001G268700 Sobic003G107900--Sobic001G268700 Sobic002G223300 Sobic002G223300 Sobic003G107900--Sobic002G223300 Sobic003G244700 Sobic003G244700 Sobic003G107900--Sobic003G244700 Sobic001G372900 Sobic001G372900 Sobic003G107900--Sobic001G372900 Sobic010G013500 Sobic010G013500 Sobic003G107900--Sobic010G013500 Sobic008G172200 Sobic008G172200 Sobic003G107900--Sobic008G172200 Sobic002G341200 Sobic002G341200 Sobic003G107900--Sobic002G341200 Sobic004G189700 Sobic004G189700 Sobic003G107900--Sobic004G189700 Sobic006G073100 Sobic006G073100 Sobic003G107900--Sobic006G073100 Sobic002G050500 Sobic002G050500 Sobic001G268700--Sobic002G050500 Sobic010G221200 Sobic010G221200 Sobic001G268700--Sobic010G221200 Sobic005G120600 Sobic005G120600 Sobic001G268700--Sobic005G120600 Sobic004G116500 Sobic004G116500 Sobic001G268700--Sobic004G116500 Sobic001G268700--Sobic003G107900 Sobic001G268700--Sobic002G223300 Sobic001G268700--Sobic001G372900 Sobic010G063566 Sobic010G063566 Sobic001G268700--Sobic010G063566 Sobic008G100400 Sobic008G100400 Sobic001G268700--Sobic008G100400 Sobic002G334600 Sobic002G334600 Sobic002G223300--Sobic002G334600 Sobic004G085300 Sobic004G085300 Sobic002G223300--Sobic004G085300 Sobic009G151200 Sobic009G151200 Sobic002G223300--Sobic009G151200 Sobic003G132700 Sobic003G132700 Sobic002G223300--Sobic003G132700 Sobic007G046900 Sobic007G046900 Sobic002G223300--Sobic007G046900 Sobic004G285000 Sobic004G285000 Sobic002G223300--Sobic004G285000 Sobic006G210200 Sobic006G210200 Sobic002G223300--Sobic006G210200 Sobic002G223300--Sobic002G050500 Sobic002G339800 Sobic002G339800 Sobic002G223300--Sobic002G339800 Sobic006G203200 Sobic006G203200 Sobic003G244700--Sobic006G203200 Sobic002G253600 Sobic002G253600 Sobic003G244700--Sobic002G253600 Sobic002G019600 Sobic002G019600 Sobic003G244700--Sobic002G019600 Sobic003G244700--Sobic002G050500 Sobic002G362300 Sobic002G362300 Sobic003G244700--Sobic002G362300 Sobic001G371000 Sobic001G371000 Sobic003G244700--Sobic001G371000 Sobic010G235500 Sobic010G235500 Sobic003G244700--Sobic010G235500 Sobic002G016900 Sobic002G016900 Sobic003G244700--Sobic002G016900 Sobic001G384600 Sobic001G384600 Sobic003G244700--Sobic001G384600 Sobic001G499200 Sobic001G499200 Sobic001G372900--Sobic001G499200 Sobic001G296100 Sobic001G296100 Sobic001G372900--Sobic001G296100 Sobic003G077500 Sobic003G077500 Sobic001G372900--Sobic003G077500 Sobic006G081500 Sobic006G081500 Sobic001G372900--Sobic006G081500 Sobic001G157100 Sobic001G157100 Sobic001G372900--Sobic001G157100 Sobic006G084300 Sobic006G084300 Sobic001G372900--Sobic006G084300 Sobic001G540700 Sobic001G540700 Sobic001G372900--Sobic001G540700 Sobic001G372900--Sobic008G172200 Sobic001G372900--Sobic002G334600 Sobic009G000600 Sobic009G000600 Sobic010G013500--Sobic009G000600 Sobic004G199200 Sobic004G199200 Sobic010G013500--Sobic004G199200 Sobic006G022400 Sobic006G022400 Sobic010G013500--Sobic006G022400 Sobic010G013500--Sobic002G223300 Sobic002G284400 Sobic002G284400 Sobic010G013500--Sobic002G284400 Sobic001G290500 Sobic001G290500 Sobic010G013500--Sobic001G290500 Sobic010G013500--Sobic001G372900 Sobic006G281900 Sobic006G281900 Sobic010G013500--Sobic006G281900 Sobic010G013500--Sobic005G120600 Sobic008G172200--Sobic001G372900 Sobic001G212600 Sobic001G212600 Sobic008G172200--Sobic001G212600 Sobic003G351900 Sobic003G351900 Sobic008G172200--Sobic003G351900 Sobic008G172200--Sobic003G107900 Sobic008G172200--Sobic001G157100 Sobic008G172200--Sobic002G334600 Sobic008G172200--Sobic001G499200 Sobic009G064900 Sobic009G064900 Sobic008G172200--Sobic009G064900 Sobic008G172200--Sobic002G223300 Sobic001G315400 Sobic001G315400 Sobic002G341200--Sobic001G315400 Sobic002G341200--Sobic002G050500 Sobic002G341200--Sobic001G372900 Sobic002G341200--Sobic002G223300 Sobic004G289500 Sobic004G289500 Sobic002G341200--Sobic004G289500 Sobic001G395200 Sobic001G395200 Sobic002G341200--Sobic001G395200 Sobic002G341200--Sobic003G077500 Sobic009G213100 Sobic009G213100 Sobic002G341200--Sobic009G213100 Sobic001G346700 Sobic001G346700 Sobic002G341200--Sobic001G346700 Sobic006G022500 Sobic006G022500 Sobic004G189700--Sobic006G022500 Sobic004G189700--Sobic006G022400 Sobic008G090300 Sobic008G090300 Sobic004G189700--Sobic008G090300 Sobic005G177900 Sobic005G177900 Sobic004G189700--Sobic005G177900 Sobic003G397100 Sobic003G397100 Sobic004G189700--Sobic003G397100 Sobic002G268900 Sobic002G268900 Sobic004G189700--Sobic002G268900 Sobic004G189700--Sobic003G077500 Sobic004G189700--Sobic001G499200 Sobic001G065300 Sobic001G065300 Sobic004G189700--Sobic001G065300 Sobic006G073100--Sobic001G268700 Sobic005G168300 Sobic005G168300 Sobic006G073100--Sobic005G168300 Sobic006G073100--Sobic003G107900 Sobic006G073100--Sobic002G050500 Sobic002G140800 Sobic002G140800 Sobic006G073100--Sobic002G140800 Sobic002G380100 Sobic002G380100 Sobic006G073100--Sobic002G380100 Sobic006G073100--Sobic003G244700 Sobic003G412100 Sobic003G412100 Sobic006G073100--Sobic003G412100 Sobic006G073100--Sobic004G289500
Octagon: transcription factors


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