Gene annotation
Transcriptome id Sobic.009G088600.1
Synonym Sb09g008160
Functional annotation expressed protein
UniProt C5YV99
Pfam PF00235
Panther DB PTHR36780 PTHR36780:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G19400 : Profilin family protein
RAP-DB (Rice) LOC_Os05g15180.2 : expressed protein
MaizeGDB (Corn) Zm00025a043223 , Zm00025a037150
Brachypodium -
Barley HORVU4Hr1G055450.7 , HORVU4Hr1G055450.4 , HORVU6Hr1G034410.1 , HORVU6Hr1G034410.2 , HORVU4Hr1G055450.1 , HORVU3Hr1G106100.1 , HORVU4Hr1G055450.9 , HORVU3Hr1G106100.2 , HORVU7Hr1G097410.1 , HORVU7Hr1G058910.1 , HORVU4Hr1G055450.10
Wheat TraesCS4B02G190700 , TraesCS4B02G190700 , TraesCS1D02G147500 , TraesCS1A02G150500
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G257200 expressed protein -
2 Sobic.004G272900 expressed protein -
3 Sobic.003G412100 aspartokinase 3, chloroplast precursor, putative, expressed K00928: aspartate kinase
4 Sobic.009G253400 hyaluronan/mRNA binding family domain containing protein, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
5 Sobic.010G235500 OsFBLD1 - F-box, LRR and FBD domain containing protein, expressed -
6 Sobic.003G107900 phosphoesterase family protein, putative, expressed K01114: phospholipase C
7 Sobic.007G219200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transmembrane 9 superfamily member, putative, expressed K17086: transmembrane 9 superfamily member 2/4
8 Sobic.010G277200 zinc knuckle domain containing protein, expressed K10904: TIMELESS-interacting protein
9 Sobic.006G250100 tRNA-specific adenosine deaminase 1, putative, expressed K15440: TAD1, tRNA-specific adenosine deaminase 1
10 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
11 Sobic.009G064900 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
12 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
13 Sobic.004G343600 3-5 exoribonuclease CSL4, putative, expressed K07573: CSL4, exosome complex component CSL4
14 Sobic.008G172200 CIN-like (ClassII) Subclade 12 TCP(PubMedID : 21444336)@"TCP is actually a family of transcription factors named after: teosinte branched 1 (tb1, Zea mays (Maize)), cycloidea (cyc) (Antirrhinum majus) (Garden snapdragon) and PCF in rice (Oryza sativa)."(PubMedID : 27917941)@"plant-specific TCP family of transcription factors, in particular, have been shown to play key roles in evolution of plant form and structure (putative)"(PubMedID : 28383054)@TCP family transcription factor, putative, expressed -
15 Sobic.002G183300 GTP binding protein, putative, expressed -
16 Sobic.006G127500 DNA-directed RNA polymerases I, II, and III subunit RPABC1, putative, expressed K03013: RPB5, DNA-directed RNA polymerases I, II, and III subunit RPABC1
17 Sobic.001G425200 expressed protein -
18 Sobic.002G302600 OsFBX291 - F-box domain containing protein, expressed -
19 Sobic.003G113900 zinc finger matrin-type protein 5, putative, expressed K13152: U11/U12 small nuclear ribonucleoprotein 20 kDa protein
20 Sobic.002G014700 OsFBX209 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic009G088600 Sobic009G088600 Sobic003G257200 Sobic003G257200 Sobic009G088600--Sobic003G257200 Sobic004G272900 Sobic004G272900 Sobic009G088600--Sobic004G272900 Sobic003G412100 Sobic003G412100 Sobic009G088600--Sobic003G412100 Sobic009G253400 Sobic009G253400 Sobic009G088600--Sobic009G253400 Sobic010G235500 Sobic010G235500 Sobic009G088600--Sobic010G235500 Sobic003G107900 Sobic003G107900 Sobic009G088600--Sobic003G107900 Sobic007G219200 Sobic007G219200 Sobic009G088600--Sobic007G219200 Sobic010G277200 Sobic010G277200 Sobic009G088600--Sobic010G277200 Sobic006G250100 Sobic006G250100 Sobic009G088600--Sobic006G250100 Sobic003G098200 Sobic003G098200 Sobic003G257200--Sobic003G098200 Sobic003G257200--Sobic009G088600 Sobic001G097400 Sobic001G097400 Sobic003G257200--Sobic001G097400 Sobic006G127500 Sobic006G127500 Sobic003G257200--Sobic006G127500 Sobic002G267600 Sobic002G267600 Sobic003G257200--Sobic002G267600 Sobic004G343600 Sobic004G343600 Sobic003G257200--Sobic004G343600 Sobic010G092801 Sobic010G092801 Sobic003G257200--Sobic010G092801 Sobic002G183300 Sobic002G183300 Sobic003G257200--Sobic002G183300 Sobic003G257200--Sobic009G253400 Sobic002G403200 Sobic002G403200 Sobic004G272900--Sobic002G403200 Sobic008G115600 Sobic008G115600 Sobic004G272900--Sobic008G115600 Sobic003G415100 Sobic003G415100 Sobic004G272900--Sobic003G415100 Sobic010G256200 Sobic010G256200 Sobic004G272900--Sobic010G256200 Sobic001G157600 Sobic001G157600 Sobic004G272900--Sobic001G157600 Sobic002G014700 Sobic002G014700 Sobic004G272900--Sobic002G014700 Sobic002G306600 Sobic002G306600 Sobic004G272900--Sobic002G306600 Sobic003G140900 Sobic003G140900 Sobic004G272900--Sobic003G140900 Sobic006G261100 Sobic006G261100 Sobic004G272900--Sobic006G261100 Sobic003G244700 Sobic003G244700 Sobic003G412100--Sobic003G244700 Sobic002G334600 Sobic002G334600 Sobic003G412100--Sobic002G334600 Sobic003G412100--Sobic010G235500 Sobic003G184400 Sobic003G184400 Sobic003G412100--Sobic003G184400 Sobic005G040900 Sobic005G040900 Sobic003G412100--Sobic005G040900 Sobic002G105000 Sobic002G105000 Sobic003G412100--Sobic002G105000 Sobic005G009200 Sobic005G009200 Sobic003G412100--Sobic005G009200 Sobic002G362300 Sobic002G362300 Sobic003G412100--Sobic002G362300 Sobic001G346700 Sobic001G346700 Sobic003G412100--Sobic001G346700 Sobic002G218700 Sobic002G218700 Sobic009G253400--Sobic002G218700 Sobic010G170900 Sobic010G170900 Sobic009G253400--Sobic010G170900 Sobic001G261585 Sobic001G261585 Sobic009G253400--Sobic001G261585 Sobic008G007000 Sobic008G007000 Sobic009G253400--Sobic008G007000 Sobic009G253400--Sobic002G183300 Sobic009G055400 Sobic009G055400 Sobic009G253400--Sobic009G055400 Sobic003G347300 Sobic003G347300 Sobic009G253400--Sobic003G347300 Sobic001G372900 Sobic001G372900 Sobic009G253400--Sobic001G372900 Sobic002G132600 Sobic002G132600 Sobic009G253400--Sobic002G132600 Sobic010G235500--Sobic003G244700 Sobic002G223300 Sobic002G223300 Sobic010G235500--Sobic002G223300 Sobic010G235500--Sobic003G412100 Sobic010G173900 Sobic010G173900 Sobic010G235500--Sobic010G173900 Sobic006G028700 Sobic006G028700 Sobic010G235500--Sobic006G028700 Sobic004G197900 Sobic004G197900 Sobic010G235500--Sobic004G197900 Sobic003G343600 Sobic003G343600 Sobic010G235500--Sobic003G343600 Sobic001G045700 Sobic001G045700 Sobic010G235500--Sobic001G045700 Sobic006G039900 Sobic006G039900 Sobic010G235500--Sobic006G039900 Sobic001G268700 Sobic001G268700 Sobic003G107900--Sobic001G268700 Sobic003G107900--Sobic002G223300 Sobic003G107900--Sobic003G244700 Sobic003G107900--Sobic001G372900 Sobic010G013500 Sobic010G013500 Sobic003G107900--Sobic010G013500 Sobic008G172200 Sobic008G172200 Sobic003G107900--Sobic008G172200 Sobic002G341200 Sobic002G341200 Sobic003G107900--Sobic002G341200 Sobic004G189700 Sobic004G189700 Sobic003G107900--Sobic004G189700 Sobic006G073100 Sobic006G073100 Sobic003G107900--Sobic006G073100 Sobic002G219900 Sobic002G219900 Sobic007G219200--Sobic002G219900 Sobic001G115500 Sobic001G115500 Sobic007G219200--Sobic001G115500 Sobic003G027800 Sobic003G027800 Sobic007G219200--Sobic003G027800 Sobic004G249300 Sobic004G249300 Sobic007G219200--Sobic004G249300 Sobic003G077500 Sobic003G077500 Sobic007G219200--Sobic003G077500 Sobic008G125000 Sobic008G125000 Sobic007G219200--Sobic008G125000 Sobic001G435201 Sobic001G435201 Sobic007G219200--Sobic001G435201 Sobic001G382400 Sobic001G382400 Sobic007G219200--Sobic001G382400 Sobic002G394800 Sobic002G394800 Sobic007G219200--Sobic002G394800 Sobic007G038700 Sobic007G038700 Sobic010G277200--Sobic007G038700 Sobic003G153900 Sobic003G153900 Sobic010G277200--Sobic003G153900 Sobic009G148200 Sobic009G148200 Sobic010G277200--Sobic009G148200 Sobic004G199200 Sobic004G199200 Sobic010G277200--Sobic004G199200 Sobic001G408300 Sobic001G408300 Sobic010G277200--Sobic001G408300 Sobic008G169400 Sobic008G169400 Sobic010G277200--Sobic008G169400 Sobic007G031300 Sobic007G031300 Sobic010G277200--Sobic007G031300 Sobic006G109400 Sobic006G109400 Sobic010G277200--Sobic006G109400 Sobic003G351900 Sobic003G351900 Sobic010G277200--Sobic003G351900 Sobic006G250100--Sobic003G415100 Sobic001G090300 Sobic001G090300 Sobic006G250100--Sobic001G090300 Sobic008G056200 Sobic008G056200 Sobic006G250100--Sobic008G056200 Sobic006G250100--Sobic003G244700 Sobic009G069200 Sobic009G069200 Sobic006G250100--Sobic009G069200 Sobic006G126600 Sobic006G126600 Sobic006G250100--Sobic006G126600 Sobic006G250100--Sobic003G412100 Sobic001G522400 Sobic001G522400 Sobic006G250100--Sobic001G522400 Sobic001G228400 Sobic001G228400 Sobic006G250100--Sobic001G228400
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.