Gene annotation
Transcriptome id Sobic.007G219200.3
Synonym Sb07g028570
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
transmembrane 9 superfamily member, putative, expressed
UniProt A0A1Z5RBY3
Pfam PF02990
Panther DB PTHR10766 PTHR10766:SF44
NCBI CDD -
KEGG Orthology K17086; transmembrane 9 superfamily member 2/4
Gene Ontology GO:0016021; integral component of membrane


Orthologs (automatic annotation)
TAIR AT4G12650 : Endomembrane protein 70 protein family
RAP-DB (Rice) LOC_Os08g38820.2 : transmembrane 9 superfamily member, putative, expressed
MaizeGDB (Corn) Zm00025a004999 , Zm00025a021857
Brachypodium KQJ98848
Barley HORVU7Hr1G048810.2 , HORVU7Hr1G048810.3 , HORVU7Hr1G048810.1 , HORVU7Hr1G048810.4 , HORVU7Hr1G048830.1 , HORVU7Hr1G048830.2
Wheat -
Populus -


JBrowse

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cDNA sequences
Sobic.007G219200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G219900 Spc97 / Spc98 family protein, putative, expressed K16570: TUBGCP3, gamma-tubulin complex component 3
2 Sobic.001G115500 importin-alpha re-exporter, putative, expressed K18423: CSE1, CAS, exportin-2 (importin alpha re-exporter)
3 Sobic.003G027800 protein kinase family protein, putative, expressed -
4 Sobic.004G249300 proteasome subunit, putative, expressed K15030: translation initiation factor 3 subunit M
5 Sobic.003G077500 expressed protein -
6 Sobic.008G125000 AP-3 complex subunit delta, putative, expressed K12396: AP-3 complex subunit delta
7 Sobic.001G435201 - -
8 Sobic.001G382400 TKL_IRAK_CrRLK1L-1.5 - The CrRLK1L-1 subfamily has homology to the CrRLK1L homolog, expressed -
9 Sobic.002G394800 SWIB/MDM2 domain containing protein, expressed K11650: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
10 Sobic.001G113800 receptor protein kinase TMK1 precursor, putative, expressed -
11 Sobic.008G007000 HIT zinc finger domain containing protein, expressed K11663: ZNHIT1, zinc finger HIT domain-containing protein 1
12 Sobic.002G430900 PWWP domain containing protein, expressed -
13 Sobic.009G060400 proline-rich family protein, putative, expressed -
14 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
15 Sobic.008G083400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@argininosuccinate synthase, chloroplast precursor, putative, expressed K01940: argG, argininosuccinate synthase
16 Sobic.001G296800 WD repeat-containing protein 8, putative, expressed -
17 Sobic.009G064900 serine/threonine protein phosphatase 2A 59 kDa regulatory subunit Bgamma isoform, putative, expressed K11584: serine/threonine-protein phosphatase 2A regulatory subunit B'
18 Sobic.010G029000 expressed protein -
19 Sobic.002G002100 expressed protein -
20 Sobic.004G206300 pre-mRNA-splicing factor ISY1, putative, expressed K12870: pre-mRNA-splicing factor ISY1


Gene co-expression network
sample Sobic007G219200 Sobic007G219200 Sobic002G219900 Sobic002G219900 Sobic007G219200--Sobic002G219900 Sobic001G115500 Sobic001G115500 Sobic007G219200--Sobic001G115500 Sobic003G027800 Sobic003G027800 Sobic007G219200--Sobic003G027800 Sobic004G249300 Sobic004G249300 Sobic007G219200--Sobic004G249300 Sobic003G077500 Sobic003G077500 Sobic007G219200--Sobic003G077500 Sobic008G125000 Sobic008G125000 Sobic007G219200--Sobic008G125000 Sobic001G435201 Sobic001G435201 Sobic007G219200--Sobic001G435201 Sobic001G382400 Sobic001G382400 Sobic007G219200--Sobic001G382400 Sobic002G394800 Sobic002G394800 Sobic007G219200--Sobic002G394800 Sobic002G430900 Sobic002G430900 Sobic002G219900--Sobic002G430900 Sobic010G149600 Sobic010G149600 Sobic002G219900--Sobic010G149600 Sobic007G125700 Sobic007G125700 Sobic002G219900--Sobic007G125700 Sobic001G395200 Sobic001G395200 Sobic002G219900--Sobic001G395200 Sobic006G280100 Sobic006G280100 Sobic002G219900--Sobic006G280100 Sobic003G361400 Sobic003G361400 Sobic002G219900--Sobic003G361400 Sobic001G143600 Sobic001G143600 Sobic002G219900--Sobic001G143600 Sobic003G274400 Sobic003G274400 Sobic002G219900--Sobic003G274400 Sobic002G219900--Sobic003G027800 Sobic001G115500--Sobic008G125000 Sobic001G008500 Sobic001G008500 Sobic001G115500--Sobic001G008500 Sobic003G008600 Sobic003G008600 Sobic001G115500--Sobic003G008600 Sobic001G115500--Sobic004G249300 Sobic009G102900 Sobic009G102900 Sobic001G115500--Sobic009G102900 Sobic002G208400 Sobic002G208400 Sobic001G115500--Sobic002G208400 Sobic002G264300 Sobic002G264300 Sobic001G115500--Sobic002G264300 Sobic001G436300 Sobic001G436300 Sobic001G115500--Sobic001G436300 Sobic001G373000 Sobic001G373000 Sobic001G115500--Sobic001G373000 Sobic003G027800--Sobic002G219900 Sobic008G169400 Sobic008G169400 Sobic003G027800--Sobic008G169400 Sobic007G128100 Sobic007G128100 Sobic003G027800--Sobic007G128100 Sobic008G038200 Sobic008G038200 Sobic003G027800--Sobic008G038200 Sobic005G032600 Sobic005G032600 Sobic003G027800--Sobic005G032600 Sobic009G167100 Sobic009G167100 Sobic003G027800--Sobic009G167100 Sobic009G031500 Sobic009G031500 Sobic003G027800--Sobic009G031500 Sobic001G113800 Sobic001G113800 Sobic003G027800--Sobic001G113800 Sobic006G179300 Sobic006G179300 Sobic003G027800--Sobic006G179300 Sobic002G341800 Sobic002G341800 Sobic004G249300--Sobic002G341800 Sobic009G201800 Sobic009G201800 Sobic004G249300--Sobic009G201800 Sobic004G249300--Sobic001G115500 Sobic002G077900 Sobic002G077900 Sobic004G249300--Sobic002G077900 Sobic008G083400 Sobic008G083400 Sobic004G249300--Sobic008G083400 Sobic010G247400 Sobic010G247400 Sobic004G249300--Sobic010G247400 Sobic003G118400 Sobic003G118400 Sobic004G249300--Sobic003G118400 Sobic004G249300--Sobic009G102900 Sobic001G370300 Sobic001G370300 Sobic004G249300--Sobic001G370300 Sobic001G315400 Sobic001G315400 Sobic003G077500--Sobic001G315400 Sobic003G077500--Sobic007G125700 Sobic001G372900 Sobic001G372900 Sobic003G077500--Sobic001G372900 Sobic002G334600 Sobic002G334600 Sobic003G077500--Sobic002G334600 Sobic003G077500--Sobic002G219900 Sobic006G254500 Sobic006G254500 Sobic003G077500--Sobic006G254500 Sobic001G367100 Sobic001G367100 Sobic003G077500--Sobic001G367100 Sobic004G315700 Sobic004G315700 Sobic003G077500--Sobic004G315700 Sobic003G077500--Sobic009G031500 Sobic009G056300 Sobic009G056300 Sobic008G125000--Sobic009G056300 Sobic008G125000--Sobic001G115500 Sobic006G245700 Sobic006G245700 Sobic008G125000--Sobic006G245700 Sobic003G307900 Sobic003G307900 Sobic008G125000--Sobic003G307900 Sobic004G075200 Sobic004G075200 Sobic008G125000--Sobic004G075200 Sobic009G120500 Sobic009G120500 Sobic008G125000--Sobic009G120500 Sobic007G010900 Sobic007G010900 Sobic008G125000--Sobic007G010900 Sobic006G041100 Sobic006G041100 Sobic008G125000--Sobic006G041100 Sobic004G358900 Sobic004G358900 Sobic008G125000--Sobic004G358900 Sobic001G425200 Sobic001G425200 Sobic001G435201--Sobic001G425200 Sobic001G435201--Sobic003G077500 Sobic001G435201--Sobic001G113800 Sobic002G002100 Sobic002G002100 Sobic001G435201--Sobic002G002100 Sobic001G435201--Sobic007G219200 Sobic009G123500 Sobic009G123500 Sobic001G435201--Sobic009G123500 Sobic009G064900 Sobic009G064900 Sobic001G435201--Sobic009G064900 Sobic004G052800 Sobic004G052800 Sobic001G435201--Sobic004G052800 Sobic001G384600 Sobic001G384600 Sobic001G435201--Sobic001G384600 Sobic003G240100 Sobic003G240100 Sobic001G382400--Sobic003G240100 Sobic002G345800 Sobic002G345800 Sobic001G382400--Sobic002G345800 Sobic001G116600 Sobic001G116600 Sobic001G382400--Sobic001G116600 Sobic001G382400--Sobic007G125700 Sobic001G382400--Sobic007G219200 Sobic004G207000 Sobic004G207000 Sobic001G382400--Sobic004G207000 Sobic009G082600 Sobic009G082600 Sobic001G382400--Sobic009G082600 Sobic001G123100 Sobic001G123100 Sobic001G382400--Sobic001G123100 Sobic003G410700 Sobic003G410700 Sobic001G382400--Sobic003G410700 Sobic006G233300 Sobic006G233300 Sobic002G394800--Sobic006G233300 Sobic002G143900 Sobic002G143900 Sobic002G394800--Sobic002G143900 Sobic006G233000 Sobic006G233000 Sobic002G394800--Sobic006G233000 Sobic002G280600 Sobic002G280600 Sobic002G394800--Sobic002G280600 Sobic002G394800--Sobic006G245700 Sobic006G272200 Sobic006G272200 Sobic002G394800--Sobic006G272200 Sobic002G394800--Sobic001G370300 Sobic002G394800--Sobic004G249300 Sobic002G394800--Sobic002G430900
Octagon: transcription factors


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