Gene annotation
Transcriptome id Sobic.001G065300.2,Sobic.001G065300.1
Synonym Sb01g005940
Functional annotation GRF zinc finger family protein, expressed
UniProt C5WY68
Pfam PF00098 PF06839
Panther DB PTHR11390 PTHR11390:SF25
NCBI CDD KOG4400; E3 ubiquitin ligase interacting with arginine methyltransferase
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0003676nucleic acid binding GO:0006265DNA topological change GO:0003917DNA topoisomerase type I (single strand cut, ATP-independent) activity GO:0003677DNA binding


Orthologs (automatic annotation)
TAIR AT3G42860 : zinc knuckle (CCHC-type) family protein
RAP-DB (Rice) LOC_Os03g57260.2 : GRF zinc finger family protein, expressed
MaizeGDB (Corn) Zm00025a008476
Brachypodium -
Barley HORVU5Hr1G103450.2 , HORVU5Hr1G103450.3 , HORVU5Hr1G103450.1 , HORVU5Hr1G103450.6 , HORVU5Hr1G103450.7 , HORVU5Hr1G103450.4 , HORVU5Hr1G103450.5
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G050500 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -
2 Sobic.006G022500 OsFBD9 - F-box and FBD domain containing protein, expressed -
3 Sobic.009G011500 expressed protein -
4 Sobic.006G022400 F-box/RNI-like/FBD-like domains-containing protein("PubMedID : 26759170,PubMedID : 24597475")@OsFBD9 - F-box and FBD domain containing protein, expressed -
5 Sobic.002G060450 - -
6 Sobic.001G384600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed -
7 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
8 Sobic.010G173900 expressed protein -
9 Sobic.005G177900 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
10 Sobic.004G189700 OsFBL33 - F-box domain and LRR containing protein, expressed -
11 Sobic.001G522400 FHA domain containing protein, putative, expressed -
12 Sobic.010G277200 zinc knuckle domain containing protein, expressed K10904: TIMELESS-interacting protein
13 Sobic.001G448100 DNA-directed RNA polymerase subunit, putative, expressed K16252: NRPD2, DNA-directed RNA polymerase IV and V subunit 2
14 Sobic.004G227500 WD-40 repeat family protein, putative, expressed -
15 Sobic.002G268900 flap endonuclease, putative, expressed K15338: GEN1, flap endonuclease GEN
16 Sobic.001G326600 OsFBX164 - F-box domain containing protein, expressed -
17 Sobic.002G334600 OsFBX251 - F-box domain containing protein, expressed -
18 Sobic.010G046400 glyoxalase/bleomycin resistance protein/dioxygenase, putative, expressed -
19 Sobic.004G052800 DUF640 domain containing protein, putative, expressed -
20 Sobic.002G070000 OsFBX230 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic001G065300 Sobic001G065300 Sobic002G050500 Sobic002G050500 Sobic001G065300--Sobic002G050500 Sobic006G022500 Sobic006G022500 Sobic001G065300--Sobic006G022500 Sobic009G011500 Sobic009G011500 Sobic001G065300--Sobic009G011500 Sobic006G022400 Sobic006G022400 Sobic001G065300--Sobic006G022400 Sobic002G060450 Sobic002G060450 Sobic001G065300--Sobic002G060450 Sobic001G384600 Sobic001G384600 Sobic001G065300--Sobic001G384600 Sobic002G223300 Sobic002G223300 Sobic001G065300--Sobic002G223300 Sobic010G173900 Sobic010G173900 Sobic001G065300--Sobic010G173900 Sobic005G177900 Sobic005G177900 Sobic001G065300--Sobic005G177900 Sobic006G210200 Sobic006G210200 Sobic002G050500--Sobic006G210200 Sobic001G268700 Sobic001G268700 Sobic002G050500--Sobic001G268700 Sobic002G140800 Sobic002G140800 Sobic002G050500--Sobic002G140800 Sobic008G056350 Sobic008G056350 Sobic002G050500--Sobic008G056350 Sobic001G045700 Sobic001G045700 Sobic002G050500--Sobic001G045700 Sobic002G050500--Sobic002G060450 Sobic001G454301 Sobic001G454301 Sobic002G050500--Sobic001G454301 Sobic002G050500--Sobic002G223300 Sobic003G128600 Sobic003G128600 Sobic002G050500--Sobic003G128600 Sobic004G227500 Sobic004G227500 Sobic006G022500--Sobic004G227500 Sobic004G148600 Sobic004G148600 Sobic006G022500--Sobic004G148600 Sobic006G022500--Sobic001G384600 Sobic002G073300 Sobic002G073300 Sobic006G022500--Sobic002G073300 Sobic006G022500--Sobic002G060450 Sobic004G189700 Sobic004G189700 Sobic006G022500--Sobic004G189700 Sobic006G022500--Sobic001G045700 Sobic006G022500--Sobic006G022400 Sobic006G022500--Sobic005G177900 Sobic009G011500--Sobic001G045700 Sobic009G164900 Sobic009G164900 Sobic009G011500--Sobic009G164900 Sobic002G367300 Sobic002G367300 Sobic009G011500--Sobic002G367300 Sobic009G011500--Sobic002G060450 Sobic009G011500--Sobic004G227500 Sobic009G011500--Sobic006G022500 Sobic002G049000 Sobic002G049000 Sobic009G011500--Sobic002G049000 Sobic009G011500--Sobic010G173900 Sobic009G011500--Sobic001G065300 Sobic004G207000 Sobic004G207000 Sobic006G022400--Sobic004G207000 Sobic001G079900 Sobic001G079900 Sobic006G022400--Sobic001G079900 Sobic009G216500 Sobic009G216500 Sobic006G022400--Sobic009G216500 Sobic006G022400--Sobic005G177900 Sobic001G395200 Sobic001G395200 Sobic006G022400--Sobic001G395200 Sobic003G351900 Sobic003G351900 Sobic006G022400--Sobic003G351900 Sobic006G022400--Sobic006G022500 Sobic008G169400 Sobic008G169400 Sobic006G022400--Sobic008G169400 Sobic005G032600 Sobic005G032600 Sobic006G022400--Sobic005G032600 Sobic003G185250 Sobic003G185250 Sobic002G060450--Sobic003G185250 Sobic002G060450--Sobic002G049000 Sobic007G046900 Sobic007G046900 Sobic002G060450--Sobic007G046900 Sobic002G060450--Sobic006G210200 Sobic006G006500 Sobic006G006500 Sobic002G060450--Sobic006G006500 Sobic002G060450--Sobic001G045700 Sobic002G060450--Sobic002G050500 Sobic002G060450--Sobic006G022500 Sobic003G346000 Sobic003G346000 Sobic002G060450--Sobic003G346000 Sobic001G384600--Sobic005G177900 Sobic001G384600--Sobic006G022500 Sobic001G384600--Sobic004G148600 Sobic001G228400 Sobic001G228400 Sobic001G384600--Sobic001G228400 Sobic009G194700 Sobic009G194700 Sobic001G384600--Sobic009G194700 Sobic003G244700 Sobic003G244700 Sobic001G384600--Sobic003G244700 Sobic006G126600 Sobic006G126600 Sobic001G384600--Sobic006G126600 Sobic001G384600--Sobic006G022400 Sobic004G052800 Sobic004G052800 Sobic001G384600--Sobic004G052800 Sobic002G334600 Sobic002G334600 Sobic002G223300--Sobic002G334600 Sobic004G085300 Sobic004G085300 Sobic002G223300--Sobic004G085300 Sobic009G151200 Sobic009G151200 Sobic002G223300--Sobic009G151200 Sobic003G132700 Sobic003G132700 Sobic002G223300--Sobic003G132700 Sobic002G223300--Sobic007G046900 Sobic004G285000 Sobic004G285000 Sobic002G223300--Sobic004G285000 Sobic002G223300--Sobic006G210200 Sobic002G223300--Sobic002G050500 Sobic002G339800 Sobic002G339800 Sobic002G223300--Sobic002G339800 Sobic010G046400 Sobic010G046400 Sobic010G173900--Sobic010G046400 Sobic010G173900--Sobic004G227500 Sobic010G173900--Sobic002G334600 Sobic010G173900--Sobic001G045700 Sobic010G173900--Sobic009G011500 Sobic010G208500 Sobic010G208500 Sobic010G173900--Sobic010G208500 Sobic010G173900--Sobic002G050500 Sobic002G157200 Sobic002G157200 Sobic010G173900--Sobic002G157200 Sobic010G173900--Sobic002G367300 Sobic005G177900--Sobic001G384600 Sobic005G177900--Sobic006G022400 Sobic005G177900--Sobic004G052800 Sobic005G177900--Sobic006G022500 Sobic005G177900--Sobic004G207000 Sobic005G177900--Sobic001G228400 Sobic005G177900--Sobic006G126600 Sobic005G177900--Sobic004G189700 Sobic005G177900--Sobic002G223300
Octagon: transcription factors


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