Gene annotation
Transcriptome id Sobic.005G177900.1,Sobic.005G177900.2
Synonym Sb05g023740, ATHVA22A, HVA22A
Functional annotation HVA22, putative, expressed
UniProt C5Y5V3 , A0A1B6PT86
Pfam PF03134
Panther DB PTHR12300 PTHR12300:SF61
NCBI CDD KOG1725; Protein involved in membrane traffic (YOP1/TB2/DP1/HVA22 family)
KEGG Orthology K17279; receptor expression-enhancing protein 5/6
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G74520 : HVA22 homologue A
RAP-DB (Rice) LOC_Os11g38920.2 : HVA22, putative, expressed
MaizeGDB (Corn) Zm00025a029431
Brachypodium KQJ87908
Barley -
Wheat TraesCS4D02G141600 , TraesCS4A02G173900
Populus -


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cDNA sequences
Sobic.005G177900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G384600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed -
2 Sobic.006G022400 F-box/RNI-like/FBD-like domains-containing protein("PubMedID : 26759170,PubMedID : 24597475")@OsFBD9 - F-box and FBD domain containing protein, expressed -
3 Sobic.004G052800 DUF640 domain containing protein, putative, expressed -
4 Sobic.006G022500 OsFBD9 - F-box and FBD domain containing protein, expressed -
5 Sobic.004G207000 fasciated ear2, putative, expressed -
6 Sobic.001G228400 OsFBX217 - F-box domain containing protein, expressed -
7 Sobic.006G126600 Trihelix Family(PubMedID : 24864043)@MYB family transcription factor, putative, expressed -
8 Sobic.004G189700 OsFBL33 - F-box domain and LRR containing protein, expressed -
9 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
10 Sobic.001G372900 expressed protein K08819: cyclin-dependent kinase 12/13
11 Sobic.002G302600 OsFBX291 - F-box domain containing protein, expressed -
12 Sobic.009G194700 IQ calmodulin-binding motif family protein, putative, expressed -
13 Sobic.004G148600 ankyrin, putative, expressed -
14 Sobic.003G244700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
15 Sobic.007G197100 expressed protein -
16 Sobic.009G257500 expressed protein -
17 Sobic.009G192500 OsFBX169 - F-box domain containing protein, expressed -
18 Sobic.001G065300 GRF zinc finger family protein, expressed -
19 Sobic.001G079900 expressed protein -
20 Sobic.002G050500 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -


Gene co-expression network
sample Sobic005G177900 Sobic005G177900 Sobic001G384600 Sobic001G384600 Sobic005G177900--Sobic001G384600 Sobic006G022400 Sobic006G022400 Sobic005G177900--Sobic006G022400 Sobic004G052800 Sobic004G052800 Sobic005G177900--Sobic004G052800 Sobic006G022500 Sobic006G022500 Sobic005G177900--Sobic006G022500 Sobic004G207000 Sobic004G207000 Sobic005G177900--Sobic004G207000 Sobic001G228400 Sobic001G228400 Sobic005G177900--Sobic001G228400 Sobic006G126600 Sobic006G126600 Sobic005G177900--Sobic006G126600 Sobic004G189700 Sobic004G189700 Sobic005G177900--Sobic004G189700 Sobic002G223300 Sobic002G223300 Sobic005G177900--Sobic002G223300 Sobic001G384600--Sobic005G177900 Sobic001G384600--Sobic006G022500 Sobic004G148600 Sobic004G148600 Sobic001G384600--Sobic004G148600 Sobic001G384600--Sobic001G228400 Sobic009G194700 Sobic009G194700 Sobic001G384600--Sobic009G194700 Sobic003G244700 Sobic003G244700 Sobic001G384600--Sobic003G244700 Sobic001G384600--Sobic006G126600 Sobic001G384600--Sobic006G022400 Sobic001G384600--Sobic004G052800 Sobic006G022400--Sobic004G207000 Sobic001G079900 Sobic001G079900 Sobic006G022400--Sobic001G079900 Sobic009G216500 Sobic009G216500 Sobic006G022400--Sobic009G216500 Sobic006G022400--Sobic005G177900 Sobic001G395200 Sobic001G395200 Sobic006G022400--Sobic001G395200 Sobic003G351900 Sobic003G351900 Sobic006G022400--Sobic003G351900 Sobic006G022400--Sobic006G022500 Sobic008G169400 Sobic008G169400 Sobic006G022400--Sobic008G169400 Sobic005G032600 Sobic005G032600 Sobic006G022400--Sobic005G032600 Sobic004G052800--Sobic001G079900 Sobic001G384700 Sobic001G384700 Sobic004G052800--Sobic001G384700 Sobic002G216600 Sobic002G216600 Sobic004G052800--Sobic002G216600 Sobic004G052800--Sobic005G177900 Sobic007G197100 Sobic007G197100 Sobic004G052800--Sobic007G197100 Sobic005G204100 Sobic005G204100 Sobic004G052800--Sobic005G204100 Sobic004G052800--Sobic005G032600 Sobic004G012700 Sobic004G012700 Sobic004G052800--Sobic004G012700 Sobic003G302000 Sobic003G302000 Sobic004G052800--Sobic003G302000 Sobic004G227500 Sobic004G227500 Sobic006G022500--Sobic004G227500 Sobic006G022500--Sobic004G148600 Sobic006G022500--Sobic001G384600 Sobic002G073300 Sobic002G073300 Sobic006G022500--Sobic002G073300 Sobic002G060450 Sobic002G060450 Sobic006G022500--Sobic002G060450 Sobic006G022500--Sobic004G189700 Sobic001G045700 Sobic001G045700 Sobic006G022500--Sobic001G045700 Sobic006G022500--Sobic006G022400 Sobic006G022500--Sobic005G177900 Sobic004G207000--Sobic006G022400 Sobic001G540700 Sobic001G540700 Sobic004G207000--Sobic001G540700 Sobic007G125700 Sobic007G125700 Sobic004G207000--Sobic007G125700 Sobic009G006900 Sobic009G006900 Sobic004G207000--Sobic009G006900 Sobic002G302600 Sobic002G302600 Sobic004G207000--Sobic002G302600 Sobic004G149400 Sobic004G149400 Sobic004G207000--Sobic004G149400 Sobic004G207000--Sobic005G032600 Sobic010G149600 Sobic010G149600 Sobic004G207000--Sobic010G149600 Sobic009G031500 Sobic009G031500 Sobic004G207000--Sobic009G031500 Sobic001G228400--Sobic001G384600 Sobic001G228400--Sobic005G177900 Sobic001G228400--Sobic006G126600 Sobic002G341100 Sobic002G341100 Sobic001G228400--Sobic002G341100 Sobic010G262900 Sobic010G262900 Sobic001G228400--Sobic010G262900 Sobic008G056200 Sobic008G056200 Sobic001G228400--Sobic008G056200 Sobic006G250100 Sobic006G250100 Sobic001G228400--Sobic006G250100 Sobic003G014900 Sobic003G014900 Sobic001G228400--Sobic003G014900 Sobic003G035500 Sobic003G035500 Sobic001G228400--Sobic003G035500 Sobic009G257500 Sobic009G257500 Sobic006G126600--Sobic009G257500 Sobic006G126600--Sobic004G207000 Sobic006G126600--Sobic008G056200 Sobic006G126600--Sobic009G031500 Sobic009G192500 Sobic009G192500 Sobic006G126600--Sobic009G192500 Sobic003G415100 Sobic003G415100 Sobic006G126600--Sobic003G415100 Sobic006G126600--Sobic007G125700 Sobic006G126600--Sobic005G177900 Sobic006G126600--Sobic002G302600 Sobic004G189700--Sobic006G022500 Sobic004G189700--Sobic006G022400 Sobic008G090300 Sobic008G090300 Sobic004G189700--Sobic008G090300 Sobic004G189700--Sobic005G177900 Sobic003G397100 Sobic003G397100 Sobic004G189700--Sobic003G397100 Sobic002G268900 Sobic002G268900 Sobic004G189700--Sobic002G268900 Sobic003G077500 Sobic003G077500 Sobic004G189700--Sobic003G077500 Sobic001G499200 Sobic001G499200 Sobic004G189700--Sobic001G499200 Sobic001G065300 Sobic001G065300 Sobic004G189700--Sobic001G065300 Sobic002G334600 Sobic002G334600 Sobic002G223300--Sobic002G334600 Sobic004G085300 Sobic004G085300 Sobic002G223300--Sobic004G085300 Sobic009G151200 Sobic009G151200 Sobic002G223300--Sobic009G151200 Sobic003G132700 Sobic003G132700 Sobic002G223300--Sobic003G132700 Sobic007G046900 Sobic007G046900 Sobic002G223300--Sobic007G046900 Sobic004G285000 Sobic004G285000 Sobic002G223300--Sobic004G285000 Sobic006G210200 Sobic006G210200 Sobic002G223300--Sobic006G210200 Sobic002G050500 Sobic002G050500 Sobic002G223300--Sobic002G050500 Sobic002G339800 Sobic002G339800 Sobic002G223300--Sobic002G339800
Octagon: transcription factors


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