Gene annotation
Transcriptome id Sobic.006G126600.1
Synonym SbTri08, Sb06g020670
Functional annotation Trihelix Family (PubMedID : 24864043)
MYB family transcription factor, putative, expressed
UniProt C5YAX3
Pfam PF13837
Panther DB PTHR10032 PTHR10032:SF211
NCBI CDD KOG4282; Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain
KEGG Orthology -
Gene Ontology GO:0006351; transcription, DNA-templated GO:0005634nucleus GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT1G13450 : Homeodomain-like superfamily protein
RAP-DB (Rice) LOC_Os04g40930.1 : MYB family transcription factor, putative, expressed
MaizeGDB (Corn) Zm00025a056333
Brachypodium KQJ83244
Barley HORVU2Hr1G084030.3 , HORVU2Hr1G084030.2 , HORVU2Hr1G084030.4
Wheat TraesCS2B02G363200 , TraesCS2B02G363200 , TraesCS2D02G343200 , TraesCS2A02G320100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G257500 expressed protein -
2 Sobic.004G207000 fasciated ear2, putative, expressed -
3 Sobic.008G056200 OsFBX238 - F-box domain containing protein, expressed -
4 Sobic.009G031500 agenet domain containing protein, putative, expressed -
5 Sobic.009G192500 OsFBX169 - F-box domain containing protein, expressed -
6 Sobic.003G415100 BTBM1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
7 Sobic.007G125700 NHL repeat-containing protein, putative, expressed -
8 Sobic.005G177900 HVA22, putative, expressed K17279: receptor expression-enhancing protein 5/6
9 Sobic.002G302600 OsFBX291 - F-box domain containing protein, expressed -
10 Sobic.010G189100 expressed protein -
11 Sobic.001G384600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@endoglucanase, putative, expressed -
12 Sobic.002G223300 nucleoporin p58/p45, putative, expressed K14307: NUPL1, nucleoporin p58/p45
13 Sobic.009G194700 IQ calmodulin-binding motif family protein, putative, expressed -
14 Sobic.010G262900 expressed protein -
15 Sobic.001G522400 FHA domain containing protein, putative, expressed -
16 Sobic.006G022400 F-box/RNI-like/FBD-like domains-containing protein("PubMedID : 26759170,PubMedID : 24597475")@OsFBD9 - F-box and FBD domain containing protein, expressed -
17 Sobic.006G250100 tRNA-specific adenosine deaminase 1, putative, expressed K15440: TAD1, tRNA-specific adenosine deaminase 1
18 Sobic.003G253400 expressed protein -
19 Sobic.004G043750 - K16251: DNA-directed RNA polymerase V subunit 1
20 Sobic.001G372900 expressed protein K08819: cyclin-dependent kinase 12/13


Gene co-expression network
sample Sobic006G126600 Sobic006G126600 Sobic009G257500 Sobic009G257500 Sobic006G126600--Sobic009G257500 Sobic004G207000 Sobic004G207000 Sobic006G126600--Sobic004G207000 Sobic008G056200 Sobic008G056200 Sobic006G126600--Sobic008G056200 Sobic009G031500 Sobic009G031500 Sobic006G126600--Sobic009G031500 Sobic009G192500 Sobic009G192500 Sobic006G126600--Sobic009G192500 Sobic003G415100 Sobic003G415100 Sobic006G126600--Sobic003G415100 Sobic007G125700 Sobic007G125700 Sobic006G126600--Sobic007G125700 Sobic005G177900 Sobic005G177900 Sobic006G126600--Sobic005G177900 Sobic002G302600 Sobic002G302600 Sobic006G126600--Sobic002G302600 Sobic009G257500--Sobic006G126600 Sobic009G032200 Sobic009G032200 Sobic009G257500--Sobic009G032200 Sobic008G045800 Sobic008G045800 Sobic009G257500--Sobic008G045800 Sobic009G257500--Sobic003G415100 Sobic009G257500--Sobic008G056200 Sobic010G189100 Sobic010G189100 Sobic009G257500--Sobic010G189100 Sobic010G236200 Sobic010G236200 Sobic009G257500--Sobic010G236200 Sobic008G156200 Sobic008G156200 Sobic009G257500--Sobic008G156200 Sobic010G262900 Sobic010G262900 Sobic009G257500--Sobic010G262900 Sobic006G022400 Sobic006G022400 Sobic004G207000--Sobic006G022400 Sobic001G540700 Sobic001G540700 Sobic004G207000--Sobic001G540700 Sobic004G207000--Sobic007G125700 Sobic009G006900 Sobic009G006900 Sobic004G207000--Sobic009G006900 Sobic004G207000--Sobic002G302600 Sobic004G149400 Sobic004G149400 Sobic004G207000--Sobic004G149400 Sobic005G032600 Sobic005G032600 Sobic004G207000--Sobic005G032600 Sobic010G149600 Sobic010G149600 Sobic004G207000--Sobic010G149600 Sobic004G207000--Sobic009G031500 Sobic008G056200--Sobic006G126600 Sobic008G056200--Sobic009G257500 Sobic008G056200--Sobic008G045800 Sobic006G250100 Sobic006G250100 Sobic008G056200--Sobic006G250100 Sobic008G056200--Sobic010G189100 Sobic002G354800 Sobic002G354800 Sobic008G056200--Sobic002G354800 Sobic001G228400 Sobic001G228400 Sobic008G056200--Sobic001G228400 Sobic008G056200--Sobic009G032200 Sobic008G056200--Sobic003G415100 Sobic009G031500--Sobic004G207000 Sobic009G031500--Sobic001G540700 Sobic009G031500--Sobic006G126600 Sobic009G031500--Sobic007G125700 Sobic001G487200 Sobic001G487200 Sobic009G031500--Sobic001G487200 Sobic003G274400 Sobic003G274400 Sobic009G031500--Sobic003G274400 Sobic003G077500 Sobic003G077500 Sobic009G031500--Sobic003G077500 Sobic004G206300 Sobic004G206300 Sobic009G031500--Sobic004G206300 Sobic003G027800 Sobic003G027800 Sobic009G031500--Sobic003G027800 Sobic003G132700 Sobic003G132700 Sobic009G192500--Sobic003G132700 Sobic007G117100 Sobic007G117100 Sobic009G192500--Sobic007G117100 Sobic002G430900 Sobic002G430900 Sobic009G192500--Sobic002G430900 Sobic009G022100 Sobic009G022100 Sobic009G192500--Sobic009G022100 Sobic009G192500--Sobic007G125700 Sobic002G095700 Sobic002G095700 Sobic009G192500--Sobic002G095700 Sobic003G253400 Sobic003G253400 Sobic009G192500--Sobic003G253400 Sobic002G223300 Sobic002G223300 Sobic009G192500--Sobic002G223300 Sobic004G229100 Sobic004G229100 Sobic009G192500--Sobic004G229100 Sobic001G346700 Sobic001G346700 Sobic003G415100--Sobic001G346700 Sobic009G069200 Sobic009G069200 Sobic003G415100--Sobic009G069200 Sobic002G390400 Sobic002G390400 Sobic003G415100--Sobic002G390400 Sobic003G415100--Sobic009G257500 Sobic001G090300 Sobic001G090300 Sobic003G415100--Sobic001G090300 Sobic001G123201 Sobic001G123201 Sobic003G415100--Sobic001G123201 Sobic003G415100--Sobic006G126600 Sobic006G091850 Sobic006G091850 Sobic003G415100--Sobic006G091850 Sobic003G415100--Sobic003G253400 Sobic007G125700--Sobic002G430900 Sobic007G125700--Sobic004G207000 Sobic007G125700--Sobic010G149600 Sobic010G269300 Sobic010G269300 Sobic007G125700--Sobic010G269300 Sobic002G219900 Sobic002G219900 Sobic007G125700--Sobic002G219900 Sobic007G125700--Sobic003G077500 Sobic001G395200 Sobic001G395200 Sobic007G125700--Sobic001G395200 Sobic004G043750 Sobic004G043750 Sobic007G125700--Sobic004G043750 Sobic006G280100 Sobic006G280100 Sobic007G125700--Sobic006G280100 Sobic001G384600 Sobic001G384600 Sobic005G177900--Sobic001G384600 Sobic005G177900--Sobic006G022400 Sobic004G052800 Sobic004G052800 Sobic005G177900--Sobic004G052800 Sobic006G022500 Sobic006G022500 Sobic005G177900--Sobic006G022500 Sobic005G177900--Sobic004G207000 Sobic005G177900--Sobic001G228400 Sobic005G177900--Sobic006G126600 Sobic004G189700 Sobic004G189700 Sobic005G177900--Sobic004G189700 Sobic005G177900--Sobic002G223300 Sobic002G302600--Sobic001G540700 Sobic002G302600--Sobic004G207000 Sobic006G272800 Sobic006G272800 Sobic002G302600--Sobic006G272800 Sobic001G468000 Sobic001G468000 Sobic002G302600--Sobic001G468000 Sobic002G284100 Sobic002G284100 Sobic002G302600--Sobic002G284100 Sobic002G302600--Sobic006G126600 Sobic002G302600--Sobic009G006900 Sobic002G302600--Sobic009G031500 Sobic007G197100 Sobic007G197100 Sobic002G302600--Sobic007G197100
Octagon: transcription factors


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