Gene annotation
Transcriptome id Sobic.006G073100.1
Synonym
Functional annotation protein phosphatase 2C, putative, expressed
UniProt A0A1B6PKT3
Pfam PF00481
Panther DB PTHR13832 PTHR13832:SF285
NCBI CDD KOG0699; Serine/threonine protein phosphatase
KEGG Orthology -
Gene Ontology GO:0003824; catalytic activity GO:0006470protein dephosphorylation GO:0004722protein serine/threonine phosphatase activity


Orthologs (automatic annotation)
TAIR AT4G31860 : Protein phosphatase 2C family protein
RAP-DB (Rice) LOC_Os04g42260.1 : protein phosphatase 2C, putative, expressed
MaizeGDB (Corn) Zm00025a056404
Brachypodium -
Barley HORVU4Hr1G053970.2 , HORVU4Hr1G053970.1
Wheat TraesCS4A02G120800 , TraesCS4B02G184100 , TraesCS4D02G185200 , TraesCS6B02G051200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G268700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@lysosomal alpha-mannosidase precursor, putative, expressed K01191: alpha-mannosidase
2 Sobic.005G168300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@vegetative storage protein, putative, expressed -
3 Sobic.003G107900 phosphoesterase family protein, putative, expressed K01114: phospholipase C
4 Sobic.002G050500 type I inositol-1,4,5-trisphosphate 5-phosphatase, putative, expressed -
5 Sobic.002G140800 RNA pseudouridine synthase, putative, expressed -
6 Sobic.002G380100 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
7 Sobic.003G244700 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@pyruvate kinase, putative, expressed K00873: PK, pyruvate kinase
8 Sobic.003G412100 aspartokinase 3, chloroplast precursor, putative, expressed K00928: aspartate kinase
9 Sobic.004G289500 - -
10 Sobic.004G189700 OsFBL33 - F-box domain and LRR containing protein, expressed -
11 Sobic.002G073300 - -
12 Sobic.009G109101 - -
13 Sobic.003G067201 - -
14 Sobic.008G100400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"SMK1(Ortholog in maize:Li et al., 2014)"(PubMedID : 31659912)@tetratricopeptide-like helical, putative, expressed -
15 Sobic.009G213100 beta-galactosidase 8 precursor, putative, expressed K12309: GLB1, beta-galactosidase
16 Sobic.001G261537 - -
17 Sobic.002G232500 MATE efflux family protein, putative, expressed K03327: TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
18 Sobic.007G077700 expressed protein -
19 Sobic.001G372900 expressed protein K08819: cyclin-dependent kinase 12/13
20 Sobic.010G221200 neurochondrin family protein, putative, expressed -


Gene co-expression network
sample Sobic006G073100 Sobic006G073100 Sobic001G268700 Sobic001G268700 Sobic006G073100--Sobic001G268700 Sobic005G168300 Sobic005G168300 Sobic006G073100--Sobic005G168300 Sobic003G107900 Sobic003G107900 Sobic006G073100--Sobic003G107900 Sobic002G050500 Sobic002G050500 Sobic006G073100--Sobic002G050500 Sobic002G140800 Sobic002G140800 Sobic006G073100--Sobic002G140800 Sobic002G380100 Sobic002G380100 Sobic006G073100--Sobic002G380100 Sobic003G244700 Sobic003G244700 Sobic006G073100--Sobic003G244700 Sobic003G412100 Sobic003G412100 Sobic006G073100--Sobic003G412100 Sobic004G289500 Sobic004G289500 Sobic006G073100--Sobic004G289500 Sobic001G268700--Sobic002G050500 Sobic010G221200 Sobic010G221200 Sobic001G268700--Sobic010G221200 Sobic005G120600 Sobic005G120600 Sobic001G268700--Sobic005G120600 Sobic004G116500 Sobic004G116500 Sobic001G268700--Sobic004G116500 Sobic001G268700--Sobic003G107900 Sobic002G223300 Sobic002G223300 Sobic001G268700--Sobic002G223300 Sobic001G372900 Sobic001G372900 Sobic001G268700--Sobic001G372900 Sobic010G063566 Sobic010G063566 Sobic001G268700--Sobic010G063566 Sobic008G100400 Sobic008G100400 Sobic001G268700--Sobic008G100400 Sobic004G266300 Sobic004G266300 Sobic005G168300--Sobic004G266300 Sobic010G256000 Sobic010G256000 Sobic005G168300--Sobic010G256000 Sobic005G168300--Sobic006G073100 Sobic003G420000 Sobic003G420000 Sobic005G168300--Sobic003G420000 Sobic009G253400 Sobic009G253400 Sobic005G168300--Sobic009G253400 Sobic002G218700 Sobic002G218700 Sobic005G168300--Sobic002G218700 Sobic001G187800 Sobic001G187800 Sobic005G168300--Sobic001G187800 Sobic004G217900 Sobic004G217900 Sobic005G168300--Sobic004G217900 Sobic004G227500 Sobic004G227500 Sobic005G168300--Sobic004G227500 Sobic003G107900--Sobic001G268700 Sobic003G107900--Sobic002G223300 Sobic003G107900--Sobic003G244700 Sobic003G107900--Sobic001G372900 Sobic010G013500 Sobic010G013500 Sobic003G107900--Sobic010G013500 Sobic008G172200 Sobic008G172200 Sobic003G107900--Sobic008G172200 Sobic002G341200 Sobic002G341200 Sobic003G107900--Sobic002G341200 Sobic004G189700 Sobic004G189700 Sobic003G107900--Sobic004G189700 Sobic003G107900--Sobic006G073100 Sobic006G210200 Sobic006G210200 Sobic002G050500--Sobic006G210200 Sobic002G050500--Sobic001G268700 Sobic002G050500--Sobic002G140800 Sobic008G056350 Sobic008G056350 Sobic002G050500--Sobic008G056350 Sobic001G045700 Sobic001G045700 Sobic002G050500--Sobic001G045700 Sobic002G060450 Sobic002G060450 Sobic002G050500--Sobic002G060450 Sobic001G454301 Sobic001G454301 Sobic002G050500--Sobic001G454301 Sobic002G050500--Sobic002G223300 Sobic003G128600 Sobic003G128600 Sobic002G050500--Sobic003G128600 Sobic002G140800--Sobic001G454301 Sobic002G140800--Sobic003G128600 Sobic004G169501 Sobic004G169501 Sobic002G140800--Sobic004G169501 Sobic007G116400 Sobic007G116400 Sobic002G140800--Sobic007G116400 Sobic004G088400 Sobic004G088400 Sobic002G140800--Sobic004G088400 Sobic002G140800--Sobic002G050500 Sobic010G139301 Sobic010G139301 Sobic002G140800--Sobic010G139301 Sobic008G117200 Sobic008G117200 Sobic002G140800--Sobic008G117200 Sobic009G059600 Sobic009G059600 Sobic002G140800--Sobic009G059600 Sobic002G079100 Sobic002G079100 Sobic002G380100--Sobic002G079100 Sobic004G119400 Sobic004G119400 Sobic002G380100--Sobic004G119400 Sobic008G017100 Sobic008G017100 Sobic002G380100--Sobic008G017100 Sobic006G111200 Sobic006G111200 Sobic002G380100--Sobic006G111200 Sobic001G448100 Sobic001G448100 Sobic002G380100--Sobic001G448100 Sobic003G185250 Sobic003G185250 Sobic002G380100--Sobic003G185250 Sobic003G070100 Sobic003G070100 Sobic002G380100--Sobic003G070100 Sobic010G050700 Sobic010G050700 Sobic002G380100--Sobic010G050700 Sobic009G096100 Sobic009G096100 Sobic002G380100--Sobic009G096100 Sobic006G203200 Sobic006G203200 Sobic003G244700--Sobic006G203200 Sobic002G253600 Sobic002G253600 Sobic003G244700--Sobic002G253600 Sobic002G019600 Sobic002G019600 Sobic003G244700--Sobic002G019600 Sobic003G244700--Sobic002G050500 Sobic002G362300 Sobic002G362300 Sobic003G244700--Sobic002G362300 Sobic001G371000 Sobic001G371000 Sobic003G244700--Sobic001G371000 Sobic010G235500 Sobic010G235500 Sobic003G244700--Sobic010G235500 Sobic002G016900 Sobic002G016900 Sobic003G244700--Sobic002G016900 Sobic001G384600 Sobic001G384600 Sobic003G244700--Sobic001G384600 Sobic003G412100--Sobic003G244700 Sobic002G334600 Sobic002G334600 Sobic003G412100--Sobic002G334600 Sobic003G412100--Sobic010G235500 Sobic003G184400 Sobic003G184400 Sobic003G412100--Sobic003G184400 Sobic005G040900 Sobic005G040900 Sobic003G412100--Sobic005G040900 Sobic002G105000 Sobic002G105000 Sobic003G412100--Sobic002G105000 Sobic005G009200 Sobic005G009200 Sobic003G412100--Sobic005G009200 Sobic003G412100--Sobic002G362300 Sobic001G346700 Sobic001G346700 Sobic003G412100--Sobic001G346700 Sobic006G269600 Sobic006G269600 Sobic004G289500--Sobic006G269600 Sobic002G073300 Sobic002G073300 Sobic004G289500--Sobic002G073300 Sobic004G289500--Sobic002G140800 Sobic004G289500--Sobic010G139301 Sobic004G286900 Sobic004G286900 Sobic004G289500--Sobic004G286900 Sobic006G063300 Sobic006G063300 Sobic004G289500--Sobic006G063300 Sobic004G193800 Sobic004G193800 Sobic004G289500--Sobic004G193800 Sobic004G289500--Sobic002G050500 Sobic008G086200 Sobic008G086200 Sobic004G289500--Sobic008G086200
Octagon: transcription factors


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