Gene annotation
Transcriptome id Sobic.002G232500.1
Synonym Sb02g027170
Functional annotation MATE efflux family protein, putative, expressed
UniProt A0A1B6QD17
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF150
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT5G65380 : MATE efflux family protein
RAP-DB (Rice) LOC_Os09g29284.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium KQJ92476 , KQJ92477
Barley HORVU5Hr1G045360.9 , HORVU5Hr1G045360.8 , HORVU5Hr1G045360.4 , HORVU5Hr1G045360.7 , HORVU5Hr1G045360.6 , HORVU5Hr1G045360.3 , HORVU5Hr1G045360.11 , HORVU5Hr1G045360.13 , HORVU5Hr1G045360.12 , HORVU5Hr1G045360.15 , HORVU5Hr1G045360.14 , HORVU5Hr1G045360.16
Wheat TraesCS5B02G245500 , TraesCS5D02G150100 , TraesCS5D02G254500 , TraesCS5A02G247900 , TraesCS5A02G142000
Populus PNT48910


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G061600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidase M50, mammalian sterol-regulatory element binding protein, putative, expressed -
2 Sobic.008G068400 - -
3 Sobic.005G054600 pollen signalling protein with adenylyl cyclase activity, putative, expressed -
4 Sobic.007G154800 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
5 Sobic.006G062400 Leucine Rich Repeat family protein, expressed -
6 Sobic.006G132200 CHIT3 - Chitinase family protein precursor, expressed K01183: chitinase
7 Sobic.002G318900 expressed protein -
8 Sobic.004G240900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA and BR treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
9 Sobic.003G029300 lachrymatory factor synthase, putative, expressed -
10 Sobic.007G099500 hypothetical protein -
11 Sobic.003G176200 - -
12 Sobic.008G049000 diacylglycerol O-acyltransferase, putative, expressed -
13 Sobic.007G066050 - -
14 Sobic.005G054000 pollen signalling protein with adenylyl cyclase activity, putative, expressed -
15 Sobic.002G047100 - -
16 Sobic.009G099700 - -
17 Sobic.001G164200 cytochrome P450, putative, expressed -
18 Sobic.001G305400 metallothionein family protein, expressed -
19 Sobic.008G091900 - -
20 Sobic.009G102800 MRH1, putative, expressed -


Gene co-expression network
sample Sobic002G232500 Sobic002G232500 Sobic001G061600 Sobic001G061600 Sobic002G232500--Sobic001G061600 Sobic008G068400 Sobic008G068400 Sobic002G232500--Sobic008G068400 Sobic005G054600 Sobic005G054600 Sobic002G232500--Sobic005G054600 Sobic007G154800 Sobic007G154800 Sobic002G232500--Sobic007G154800 Sobic006G062400 Sobic006G062400 Sobic002G232500--Sobic006G062400 Sobic006G132200 Sobic006G132200 Sobic002G232500--Sobic006G132200 Sobic002G318900 Sobic002G318900 Sobic002G232500--Sobic002G318900 Sobic004G240900 Sobic004G240900 Sobic002G232500--Sobic004G240900 Sobic003G029300 Sobic003G029300 Sobic002G232500--Sobic003G029300 Sobic004G151900 Sobic004G151900 Sobic001G061600--Sobic004G151900 Sobic003G042100 Sobic003G042100 Sobic001G061600--Sobic003G042100 Sobic001G061600--Sobic006G062400 Sobic001G061600--Sobic007G154800 Sobic007G182600 Sobic007G182600 Sobic001G061600--Sobic007G182600 Sobic008G021700 Sobic008G021700 Sobic001G061600--Sobic008G021700 Sobic001G164200 Sobic001G164200 Sobic001G061600--Sobic001G164200 Sobic001G061600--Sobic003G029300 Sobic001G061600--Sobic002G232500 Sobic009G197200 Sobic009G197200 Sobic008G068400--Sobic009G197200 Sobic008G068400--Sobic006G132200 Sobic007G115000 Sobic007G115000 Sobic008G068400--Sobic007G115000 Sobic005G212500 Sobic005G212500 Sobic008G068400--Sobic005G212500 Sobic009G004700 Sobic009G004700 Sobic008G068400--Sobic009G004700 Sobic010G144100 Sobic010G144100 Sobic008G068400--Sobic010G144100 Sobic003G031750 Sobic003G031750 Sobic008G068400--Sobic003G031750 Sobic002G062300 Sobic002G062300 Sobic008G068400--Sobic002G062300 Sobic003G424100 Sobic003G424100 Sobic008G068400--Sobic003G424100 Sobic005G054300 Sobic005G054300 Sobic005G054600--Sobic005G054300 Sobic005G054000 Sobic005G054000 Sobic005G054600--Sobic005G054000 Sobic009G026400 Sobic009G026400 Sobic005G054600--Sobic009G026400 Sobic001G305400 Sobic001G305400 Sobic005G054600--Sobic001G305400 Sobic005G054600--Sobic002G062300 Sobic009G101600 Sobic009G101600 Sobic005G054600--Sobic009G101600 Sobic002G221200 Sobic002G221200 Sobic005G054600--Sobic002G221200 Sobic005G142200 Sobic005G142200 Sobic005G054600--Sobic005G142200 Sobic002G060500 Sobic002G060500 Sobic005G054600--Sobic002G060500 Sobic007G154800--Sobic003G029300 Sobic007G154800--Sobic006G062400 Sobic007G154800--Sobic004G151900 Sobic009G102800 Sobic009G102800 Sobic007G154800--Sobic009G102800 Sobic007G066050 Sobic007G066050 Sobic007G154800--Sobic007G066050 Sobic008G176666 Sobic008G176666 Sobic007G154800--Sobic008G176666 Sobic008G176732 Sobic008G176732 Sobic007G154800--Sobic008G176732 Sobic007G154800--Sobic010G144100 Sobic007G154800--Sobic001G061600 Sobic006G062400--Sobic007G154800 Sobic006G062400--Sobic003G029300 Sobic006G062400--Sobic008G176732 Sobic006G062400--Sobic006G132200 Sobic007G099500 Sobic007G099500 Sobic006G062400--Sobic007G099500 Sobic001G046600 Sobic001G046600 Sobic006G062400--Sobic001G046600 Sobic006G062400--Sobic001G061600 Sobic004G016500 Sobic004G016500 Sobic006G062400--Sobic004G016500 Sobic006G062400--Sobic003G424100 Sobic008G108900 Sobic008G108900 Sobic006G132200--Sobic008G108900 Sobic009G196700 Sobic009G196700 Sobic006G132200--Sobic009G196700 Sobic006G132200--Sobic002G062300 Sobic009G113600 Sobic009G113600 Sobic006G132200--Sobic009G113600 Sobic005G212600 Sobic005G212600 Sobic006G132200--Sobic005G212600 Sobic007G059300 Sobic007G059300 Sobic006G132200--Sobic007G059300 Sobic006G132200--Sobic003G031750 Sobic008G091900 Sobic008G091900 Sobic006G132200--Sobic008G091900 Sobic008G031350 Sobic008G031350 Sobic006G132200--Sobic008G031350 Sobic010G193400 Sobic010G193400 Sobic002G318900--Sobic010G193400 Sobic002G318900--Sobic006G132200 Sobic008G049000 Sobic008G049000 Sobic002G318900--Sobic008G049000 Sobic002G318900--Sobic007G066050 Sobic002G318900--Sobic008G108900 Sobic002G047100 Sobic002G047100 Sobic002G318900--Sobic002G047100 Sobic002G318900--Sobic008G091900 Sobic002G094500 Sobic002G094500 Sobic002G318900--Sobic002G094500 Sobic002G318900--Sobic009G196700 Sobic004G240900--Sobic003G424100 Sobic006G133600 Sobic006G133600 Sobic004G240900--Sobic006G133600 Sobic004G240900--Sobic001G046600 Sobic004G240900--Sobic007G099500 Sobic004G240900--Sobic004G016500 Sobic009G059600 Sobic009G059600 Sobic004G240900--Sobic009G059600 Sobic004G240900--Sobic003G029300 Sobic004G193800 Sobic004G193800 Sobic004G240900--Sobic004G193800 Sobic004G164600 Sobic004G164600 Sobic004G240900--Sobic004G164600 Sobic003G029300--Sobic007G154800 Sobic007G123200 Sobic007G123200 Sobic003G029300--Sobic007G123200 Sobic003G029300--Sobic009G102800 Sobic003G029300--Sobic004G240900 Sobic003G029300--Sobic004G193800 Sobic003G029300--Sobic004G151900 Sobic003G029300--Sobic006G062400 Sobic003G029300--Sobic004G016500 Sobic003G029300--Sobic001G046600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.