Gene annotation
Transcriptome id Sobic.006G062400.1
Synonym Sb06g015010
Functional annotation Leucine Rich Repeat family protein, expressed
UniProt A0A1B6PKJ3
Pfam -
Panther DB PTHR23155 PTHR23155:SF530
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G19050 : NB-ARC domain-containing disease resistance protein
RAP-DB (Rice) LOC_Os04g32940.1 : Leucine Rich Repeat family protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G154800 bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed K01674: carbonic anhydrase
2 Sobic.003G029300 lachrymatory factor synthase, putative, expressed -
3 Sobic.008G176732 - -
4 Sobic.006G132200 CHIT3 - Chitinase family protein precursor, expressed K01183: chitinase
5 Sobic.007G099500 hypothetical protein -
6 Sobic.001G046600 cycloartenol-C-24-methyltransferase 1, putative, expressed -
7 Sobic.001G061600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peptidase M50, mammalian sterol-regulatory element binding protein, putative, expressed -
8 Sobic.004G016500 PPR repeat domain containing protein, putative, expressed -
9 Sobic.003G424100 sulfotransferase domain containing protein, expressed -
10 Sobic.004G164600 - -
11 Sobic.004G193800 hydrolase, alpha/beta fold family domain containing protein, expressed K14759: isochorismate synthase / 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase / 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase / O-succinylbenzoate synthase
12 Sobic.008G031350 - -
13 Sobic.003G089650 - -
14 Sobic.004G151900 - -
15 Sobic.004G240900 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, flower and stem, expression induced by IAA and BR treatments"(PubMedID : 20528920)@auxin efflux carrier component, putative, expressed K13947: auxin efflux carrier family protein
16 Sobic.008G176666 - -
17 Sobic.008G068400 - -
18 Sobic.007G066050 - -
19 Sobic.008G108900 GRF zinc finger family protein, expressed -
20 Sobic.005G212600 NBS-LRR disease resistance protein, putative, expressed -


Gene co-expression network
sample Sobic006G062400 Sobic006G062400 Sobic007G154800 Sobic007G154800 Sobic006G062400--Sobic007G154800 Sobic003G029300 Sobic003G029300 Sobic006G062400--Sobic003G029300 Sobic008G176732 Sobic008G176732 Sobic006G062400--Sobic008G176732 Sobic006G132200 Sobic006G132200 Sobic006G062400--Sobic006G132200 Sobic007G099500 Sobic007G099500 Sobic006G062400--Sobic007G099500 Sobic001G046600 Sobic001G046600 Sobic006G062400--Sobic001G046600 Sobic001G061600 Sobic001G061600 Sobic006G062400--Sobic001G061600 Sobic004G016500 Sobic004G016500 Sobic006G062400--Sobic004G016500 Sobic003G424100 Sobic003G424100 Sobic006G062400--Sobic003G424100 Sobic007G154800--Sobic003G029300 Sobic007G154800--Sobic006G062400 Sobic004G151900 Sobic004G151900 Sobic007G154800--Sobic004G151900 Sobic009G102800 Sobic009G102800 Sobic007G154800--Sobic009G102800 Sobic007G066050 Sobic007G066050 Sobic007G154800--Sobic007G066050 Sobic008G176666 Sobic008G176666 Sobic007G154800--Sobic008G176666 Sobic007G154800--Sobic008G176732 Sobic010G144100 Sobic010G144100 Sobic007G154800--Sobic010G144100 Sobic007G154800--Sobic001G061600 Sobic003G029300--Sobic007G154800 Sobic007G123200 Sobic007G123200 Sobic003G029300--Sobic007G123200 Sobic003G029300--Sobic009G102800 Sobic004G240900 Sobic004G240900 Sobic003G029300--Sobic004G240900 Sobic004G193800 Sobic004G193800 Sobic003G029300--Sobic004G193800 Sobic003G029300--Sobic004G151900 Sobic003G029300--Sobic006G062400 Sobic003G029300--Sobic004G016500 Sobic003G029300--Sobic001G046600 Sobic008G176732--Sobic008G176666 Sobic008G157950 Sobic008G157950 Sobic008G176732--Sobic008G157950 Sobic008G176732--Sobic001G046600 Sobic008G176732--Sobic004G016500 Sobic004G164600 Sobic004G164600 Sobic008G176732--Sobic004G164600 Sobic003G036950 Sobic003G036950 Sobic008G176732--Sobic003G036950 Sobic001G132500 Sobic001G132500 Sobic008G176732--Sobic001G132500 Sobic008G042250 Sobic008G042250 Sobic008G176732--Sobic008G042250 Sobic003G302701 Sobic003G302701 Sobic008G176732--Sobic003G302701 Sobic008G108900 Sobic008G108900 Sobic006G132200--Sobic008G108900 Sobic009G196700 Sobic009G196700 Sobic006G132200--Sobic009G196700 Sobic002G062300 Sobic002G062300 Sobic006G132200--Sobic002G062300 Sobic009G113600 Sobic009G113600 Sobic006G132200--Sobic009G113600 Sobic005G212600 Sobic005G212600 Sobic006G132200--Sobic005G212600 Sobic007G059300 Sobic007G059300 Sobic006G132200--Sobic007G059300 Sobic003G031750 Sobic003G031750 Sobic006G132200--Sobic003G031750 Sobic008G091900 Sobic008G091900 Sobic006G132200--Sobic008G091900 Sobic008G031350 Sobic008G031350 Sobic006G132200--Sobic008G031350 Sobic009G059600 Sobic009G059600 Sobic007G099500--Sobic009G059600 Sobic007G099500--Sobic004G164600 Sobic002G090400 Sobic002G090400 Sobic007G099500--Sobic002G090400 Sobic007G073400 Sobic007G073400 Sobic007G099500--Sobic007G073400 Sobic007G099500--Sobic003G424100 Sobic007G099500--Sobic004G240900 Sobic007G099500--Sobic008G031350 Sobic004G212800 Sobic004G212800 Sobic007G099500--Sobic004G212800 Sobic002G221700 Sobic002G221700 Sobic007G099500--Sobic002G221700 Sobic001G046600--Sobic004G016500 Sobic001G046600--Sobic004G212800 Sobic001G046600--Sobic004G164600 Sobic001G046600--Sobic007G073400 Sobic001G046600--Sobic003G424100 Sobic004G112500 Sobic004G112500 Sobic001G046600--Sobic004G112500 Sobic008G167300 Sobic008G167300 Sobic001G046600--Sobic008G167300 Sobic001G046600--Sobic008G157950 Sobic001G046600--Sobic008G176732 Sobic001G061600--Sobic004G151900 Sobic003G042100 Sobic003G042100 Sobic001G061600--Sobic003G042100 Sobic001G061600--Sobic006G062400 Sobic001G061600--Sobic007G154800 Sobic007G182600 Sobic007G182600 Sobic001G061600--Sobic007G182600 Sobic008G021700 Sobic008G021700 Sobic001G061600--Sobic008G021700 Sobic001G164200 Sobic001G164200 Sobic001G061600--Sobic001G164200 Sobic001G061600--Sobic003G029300 Sobic002G232500 Sobic002G232500 Sobic001G061600--Sobic002G232500 Sobic004G016500--Sobic001G046600 Sobic002G150766 Sobic002G150766 Sobic004G016500--Sobic002G150766 Sobic002G330400 Sobic002G330400 Sobic004G016500--Sobic002G330400 Sobic004G016500--Sobic008G167300 Sobic004G016500--Sobic004G212800 Sobic003G057800 Sobic003G057800 Sobic004G016500--Sobic003G057800 Sobic001G479500 Sobic001G479500 Sobic004G016500--Sobic001G479500 Sobic004G016500--Sobic004G164600 Sobic004G016500--Sobic003G424100 Sobic003G424100--Sobic004G164600 Sobic003G424100--Sobic001G046600 Sobic003G424100--Sobic004G212800 Sobic003G424100--Sobic004G240900 Sobic003G424100--Sobic007G073400 Sobic003G424100--Sobic009G059600 Sobic003G424100--Sobic007G099500 Sobic003G424100--Sobic004G016500 Sobic008G068800 Sobic008G068800 Sobic003G424100--Sobic008G068800
Octagon: transcription factors


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