Gene annotation
Transcriptome id Sobic.005G168300.1
Synonym Sb05g022860
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
vegetative storage protein, putative, expressed
UniProt C5Y5C5
Pfam PF01535 PF13041
Panther DB PTHR24015 PTHR24015:SF780
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G13650 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os11g37660.1 : vegetative storage protein, putative, expressed
MaizeGDB (Corn) Zm00025a035282
Brachypodium -
Barley HORVU7Hr1G096930.43 , HORVU7Hr1G096930.42 , HORVU7Hr1G096930.41 , HORVU7Hr1G096930.40 , HORVU7Hr1G096930.44 , HORVU7Hr1G096930.36 , HORVU7Hr1G096930.37 , HORVU7Hr1G096930.35 , HORVU7Hr1G096930.32 , HORVU7Hr1G096930.33 , HORVU7Hr1G096930.31 , HORVU7Hr1G096930.17 , HORVU7Hr1G096930.18 , HORVU7Hr1G096930.19 , HORVU7Hr1G096930.14 , HORVU7Hr1G096930.15 , HORVU7Hr1G096930.16 , HORVU7Hr1G096930.10 , HORVU7Hr1G096930.11 , HORVU7Hr1G096930.12 , HORVU7Hr1G096930.13 , HORVU7Hr1G096930.6 , HORVU7Hr1G096930.7 , HORVU7Hr1G096930.4 , HORVU7Hr1G096930.5 , HORVU7Hr1G096930.2 , HORVU7Hr1G096930.3 , HORVU7Hr1G096930.8 , HORVU7Hr1G096930.9 , HORVU7Hr1G096930.21 , HORVU7Hr1G096930.20 , HORVU7Hr1G096930.23 , HORVU7Hr1G096930.22 , HORVU7Hr1G096930.25 , HORVU7Hr1G096930.24 , HORVU7Hr1G096930.27 , HORVU7Hr1G096930.26 , HORVU7Hr1G096930.29 , HORVU7Hr1G096930.28 , HORVU7Hr1G096930.1 , HORVU7Hr1G096930.34 , HORVU7Hr1G096930.30 , HORVU7Hr1G096930.38 , HORVU7Hr1G096930.39
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G266300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@tetratricopeptide-like helical, putative, expressed -
2 Sobic.010G256000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -
3 Sobic.006G073100 protein phosphatase 2C, putative, expressed -
4 Sobic.003G420000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
5 Sobic.009G253400 hyaluronan/mRNA binding family domain containing protein, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
6 Sobic.002G218700 mitochondrial carrier protein, putative, expressed K15121: solute carrier family 25, member 44
7 Sobic.001G187800 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
8 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -
9 Sobic.004G227500 WD-40 repeat family protein, putative, expressed -
10 Sobic.010G091500 pentatricopeptide, putative, expressed -
11 Sobic.002G140800 RNA pseudouridine synthase, putative, expressed -
12 Sobic.001G261585 - -
13 Sobic.004G025100 pentatricopeptide repeat-containing protein, putative, expressed -
14 Sobic.005G011000 Rf1, mitochondrial precursor, putative, expressed -
15 Sobic.002G380100 PPR repeat containing protein, expressed K17964: leucine-rich PPR motif-containing protein, mitochondrial
16 Sobic.004G135500 - -
17 Sobic.001G347100 tetratricopeptide-like helical, putative, expressed -
18 Sobic.010G046400 glyoxalase/bleomycin resistance protein/dioxygenase, putative, expressed -
19 Sobic.008G152300 expressed protein K15208: snRNA-activating protein complex subunit 1
20 Sobic.009G155400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide, putative, expressed -


Gene co-expression network
sample Sobic005G168300 Sobic005G168300 Sobic004G266300 Sobic004G266300 Sobic005G168300--Sobic004G266300 Sobic010G256000 Sobic010G256000 Sobic005G168300--Sobic010G256000 Sobic006G073100 Sobic006G073100 Sobic005G168300--Sobic006G073100 Sobic003G420000 Sobic003G420000 Sobic005G168300--Sobic003G420000 Sobic009G253400 Sobic009G253400 Sobic005G168300--Sobic009G253400 Sobic002G218700 Sobic002G218700 Sobic005G168300--Sobic002G218700 Sobic001G187800 Sobic001G187800 Sobic005G168300--Sobic001G187800 Sobic004G217900 Sobic004G217900 Sobic005G168300--Sobic004G217900 Sobic004G227500 Sobic004G227500 Sobic005G168300--Sobic004G227500 Sobic010G144100 Sobic010G144100 Sobic004G266300--Sobic010G144100 Sobic009G026400 Sobic009G026400 Sobic004G266300--Sobic009G026400 Sobic005G110523 Sobic005G110523 Sobic004G266300--Sobic005G110523 Sobic008G091900 Sobic008G091900 Sobic004G266300--Sobic008G091900 Sobic003G031750 Sobic003G031750 Sobic004G266300--Sobic003G031750 Sobic007G059300 Sobic007G059300 Sobic004G266300--Sobic007G059300 Sobic006G132200 Sobic006G132200 Sobic004G266300--Sobic006G132200 Sobic004G005400 Sobic004G005400 Sobic004G266300--Sobic004G005400 Sobic003G176100 Sobic003G176100 Sobic004G266300--Sobic003G176100 Sobic004G025100 Sobic004G025100 Sobic010G256000--Sobic004G025100 Sobic006G069100 Sobic006G069100 Sobic010G256000--Sobic006G069100 Sobic010G256000--Sobic002G218700 Sobic001G122200 Sobic001G122200 Sobic010G256000--Sobic001G122200 Sobic008G066900 Sobic008G066900 Sobic010G256000--Sobic008G066900 Sobic009G155400 Sobic009G155400 Sobic010G256000--Sobic009G155400 Sobic002G389200 Sobic002G389200 Sobic010G256000--Sobic002G389200 Sobic010G256000--Sobic005G168300 Sobic002G183300 Sobic002G183300 Sobic010G256000--Sobic002G183300 Sobic001G268700 Sobic001G268700 Sobic006G073100--Sobic001G268700 Sobic006G073100--Sobic005G168300 Sobic003G107900 Sobic003G107900 Sobic006G073100--Sobic003G107900 Sobic002G050500 Sobic002G050500 Sobic006G073100--Sobic002G050500 Sobic002G140800 Sobic002G140800 Sobic006G073100--Sobic002G140800 Sobic002G380100 Sobic002G380100 Sobic006G073100--Sobic002G380100 Sobic003G244700 Sobic003G244700 Sobic006G073100--Sobic003G244700 Sobic003G412100 Sobic003G412100 Sobic006G073100--Sobic003G412100 Sobic004G289500 Sobic004G289500 Sobic006G073100--Sobic004G289500 Sobic003G067201 Sobic003G067201 Sobic003G420000--Sobic003G067201 Sobic001G261585 Sobic001G261585 Sobic003G420000--Sobic001G261585 Sobic004G030600 Sobic004G030600 Sobic003G420000--Sobic004G030600 Sobic003G420000--Sobic001G187800 Sobic004G149800 Sobic004G149800 Sobic003G420000--Sobic004G149800 Sobic003G420000--Sobic004G217900 Sobic003G420000--Sobic005G168300 Sobic008G082800 Sobic008G082800 Sobic003G420000--Sobic008G082800 Sobic001G088900 Sobic001G088900 Sobic003G420000--Sobic001G088900 Sobic009G253400--Sobic002G218700 Sobic010G170900 Sobic010G170900 Sobic009G253400--Sobic010G170900 Sobic009G253400--Sobic001G261585 Sobic008G007000 Sobic008G007000 Sobic009G253400--Sobic008G007000 Sobic009G253400--Sobic002G183300 Sobic009G055400 Sobic009G055400 Sobic009G253400--Sobic009G055400 Sobic003G347300 Sobic003G347300 Sobic009G253400--Sobic003G347300 Sobic001G372900 Sobic001G372900 Sobic009G253400--Sobic001G372900 Sobic002G132600 Sobic002G132600 Sobic009G253400--Sobic002G132600 Sobic002G218700--Sobic003G347300 Sobic010G046400 Sobic010G046400 Sobic002G218700--Sobic010G046400 Sobic001G247200 Sobic001G247200 Sobic002G218700--Sobic001G247200 Sobic009G030300 Sobic009G030300 Sobic002G218700--Sobic009G030300 Sobic002G218700--Sobic010G256000 Sobic003G131200 Sobic003G131200 Sobic002G218700--Sobic003G131200 Sobic002G218700--Sobic004G227500 Sobic002G218700--Sobic009G253400 Sobic004G225700 Sobic004G225700 Sobic002G218700--Sobic004G225700 Sobic001G009400 Sobic001G009400 Sobic001G187800--Sobic001G009400 Sobic001G187800--Sobic009G155400 Sobic001G448100 Sobic001G448100 Sobic001G187800--Sobic001G448100 Sobic006G111200 Sobic006G111200 Sobic001G187800--Sobic006G111200 Sobic001G187800--Sobic004G217900 Sobic006G262700 Sobic006G262700 Sobic001G187800--Sobic006G262700 Sobic009G108400 Sobic009G108400 Sobic001G187800--Sobic009G108400 Sobic001G347100 Sobic001G347100 Sobic001G187800--Sobic001G347100 Sobic005G011000 Sobic005G011000 Sobic001G187800--Sobic005G011000 Sobic004G217900--Sobic009G155400 Sobic008G163400 Sobic008G163400 Sobic004G217900--Sobic008G163400 Sobic009G116400 Sobic009G116400 Sobic004G217900--Sobic009G116400 Sobic004G217900--Sobic001G187800 Sobic008G099900 Sobic008G099900 Sobic004G217900--Sobic008G099900 Sobic003G051500 Sobic003G051500 Sobic004G217900--Sobic003G051500 Sobic004G241000 Sobic004G241000 Sobic004G217900--Sobic004G241000 Sobic010G190900 Sobic010G190900 Sobic004G217900--Sobic010G190900 Sobic001G149100 Sobic001G149100 Sobic004G217900--Sobic001G149100 Sobic006G022500 Sobic006G022500 Sobic004G227500--Sobic006G022500 Sobic002G316500 Sobic002G316500 Sobic004G227500--Sobic002G316500 Sobic004G227500--Sobic010G046400 Sobic001G494100 Sobic001G494100 Sobic004G227500--Sobic001G494100 Sobic004G135500 Sobic004G135500 Sobic004G227500--Sobic004G135500 Sobic010G173900 Sobic010G173900 Sobic004G227500--Sobic010G173900 Sobic001G315400 Sobic001G315400 Sobic004G227500--Sobic001G315400 Sobic001G367100 Sobic001G367100 Sobic004G227500--Sobic001G367100 Sobic002G334600 Sobic002G334600 Sobic004G227500--Sobic002G334600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.