Gene annotation
Transcriptome id Sobic.001G261585.1
Synonym -
Functional annotation -
UniProt C6JRW0
Pfam PF00385
Panther DB PTHR22812
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G17690 : like heterochromatin protein (LHP1)
RAP-DB (Rice) LOC_Os10g17770.1 : chromo domain-containing protein LHP1, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G088900 serine/threonine-protein kinase TOUSLED, putative, expressed K08864: tousled-like kinase
2 Sobic.009G253400 hyaluronan/mRNA binding family domain containing protein, expressed K13199: plasminogen activator inhibitor 1 RNA-binding protein
3 Sobic.003G420000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide repeat domain containing protein, putative, expressed -
4 Sobic.001G367100 pleckstrin homology domain-containing protein, putative, expressed -
5 Sobic.009G235200 ribosomal RNA large subunit methyltransferase J, putative, expressed K14857: SPB1, AdoMet-dependent rRNA methyltransferase SPB1
6 Sobic.006G059500 expressed protein K13150: COIL, coilin
7 Sobic.005G168300 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@vegetative storage protein, putative, expressed -
8 Sobic.007G030000 pentatricopeptide, putative, expressed -
9 Sobic.001G187800 aldose 1-epimerase, putative, expressed K01785: galM, aldose 1-epimerase
10 Sobic.009G167100 TBC domain containing protein, expressed -
11 Sobic.010G004400 septum site-determining protein minD, putative, expressed K03609: septum site-determining protein MinD
12 Sobic.009G066400 MAR-binding filament-like protein 1, putative, expressed -
13 Sobic.010G118700 microtubule-associated protein, putative, expressed -
14 Sobic.006G109400 pentatricopeptide, putative, expressed -
15 Sobic.001G393401 - -
16 Sobic.004G149800 transcriptional derepression of gliadins and low-molecular-weight glutenins (LMWgs) by active demethylation of their promoters(PubMedID : 23184965)@hhH-GPD superfamily base excision DNA repair protein, expressed -
17 Sobic.004G129600 expressed protein -
18 Sobic.001G138400 crooked neck, putative, expressed K12869: CRN, CRNKL1, CLF1, crooked neck
19 Sobic.007G145100 SGT1 protein, putative, expressed -
20 Sobic.004G217900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pentatricopeptide domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G261585 Sobic001G261585 Sobic001G088900 Sobic001G088900 Sobic001G261585--Sobic001G088900 Sobic009G253400 Sobic009G253400 Sobic001G261585--Sobic009G253400 Sobic003G420000 Sobic003G420000 Sobic001G261585--Sobic003G420000 Sobic001G367100 Sobic001G367100 Sobic001G261585--Sobic001G367100 Sobic009G235200 Sobic009G235200 Sobic001G261585--Sobic009G235200 Sobic006G059500 Sobic006G059500 Sobic001G261585--Sobic006G059500 Sobic005G168300 Sobic005G168300 Sobic001G261585--Sobic005G168300 Sobic007G030000 Sobic007G030000 Sobic001G261585--Sobic007G030000 Sobic001G187800 Sobic001G187800 Sobic001G261585--Sobic001G187800 Sobic010G279900 Sobic010G279900 Sobic001G088900--Sobic010G279900 Sobic001G245900 Sobic001G245900 Sobic001G088900--Sobic001G245900 Sobic001G088900--Sobic001G367100 Sobic006G180700 Sobic006G180700 Sobic001G088900--Sobic006G180700 Sobic009G000400 Sobic009G000400 Sobic001G088900--Sobic009G000400 Sobic001G034500 Sobic001G034500 Sobic001G088900--Sobic001G034500 Sobic010G269300 Sobic010G269300 Sobic001G088900--Sobic010G269300 Sobic001G222000 Sobic001G222000 Sobic001G088900--Sobic001G222000 Sobic001G088900--Sobic001G261585 Sobic002G218700 Sobic002G218700 Sobic009G253400--Sobic002G218700 Sobic010G170900 Sobic010G170900 Sobic009G253400--Sobic010G170900 Sobic009G253400--Sobic001G261585 Sobic008G007000 Sobic008G007000 Sobic009G253400--Sobic008G007000 Sobic002G183300 Sobic002G183300 Sobic009G253400--Sobic002G183300 Sobic009G055400 Sobic009G055400 Sobic009G253400--Sobic009G055400 Sobic003G347300 Sobic003G347300 Sobic009G253400--Sobic003G347300 Sobic001G372900 Sobic001G372900 Sobic009G253400--Sobic001G372900 Sobic002G132600 Sobic002G132600 Sobic009G253400--Sobic002G132600 Sobic003G067201 Sobic003G067201 Sobic003G420000--Sobic003G067201 Sobic003G420000--Sobic001G261585 Sobic004G030600 Sobic004G030600 Sobic003G420000--Sobic004G030600 Sobic003G420000--Sobic001G187800 Sobic004G149800 Sobic004G149800 Sobic003G420000--Sobic004G149800 Sobic004G217900 Sobic004G217900 Sobic003G420000--Sobic004G217900 Sobic003G420000--Sobic005G168300 Sobic008G082800 Sobic008G082800 Sobic003G420000--Sobic008G082800 Sobic003G420000--Sobic001G088900 Sobic001G367100--Sobic010G279900 Sobic001G315400 Sobic001G315400 Sobic001G367100--Sobic001G315400 Sobic001G367100--Sobic001G245900 Sobic003G023400 Sobic003G023400 Sobic001G367100--Sobic003G023400 Sobic008G080500 Sobic008G080500 Sobic001G367100--Sobic008G080500 Sobic009G151200 Sobic009G151200 Sobic001G367100--Sobic009G151200 Sobic004G128200 Sobic004G128200 Sobic001G367100--Sobic004G128200 Sobic002G079100 Sobic002G079100 Sobic001G367100--Sobic002G079100 Sobic003G077500 Sobic003G077500 Sobic001G367100--Sobic003G077500 Sobic008G163500 Sobic008G163500 Sobic009G235200--Sobic008G163500 Sobic006G226300 Sobic006G226300 Sobic009G235200--Sobic006G226300 Sobic002G142600 Sobic002G142600 Sobic009G235200--Sobic002G142600 Sobic003G042400 Sobic003G042400 Sobic009G235200--Sobic003G042400 Sobic007G014800 Sobic007G014800 Sobic009G235200--Sobic007G014800 Sobic002G399200 Sobic002G399200 Sobic009G235200--Sobic002G399200 Sobic001G173800 Sobic001G173800 Sobic009G235200--Sobic001G173800 Sobic005G199200 Sobic005G199200 Sobic009G235200--Sobic005G199200 Sobic002G263700 Sobic002G263700 Sobic009G235200--Sobic002G263700 Sobic004G151000 Sobic004G151000 Sobic006G059500--Sobic004G151000 Sobic001G049800 Sobic001G049800 Sobic006G059500--Sobic001G049800 Sobic006G059500--Sobic002G132600 Sobic006G111200 Sobic006G111200 Sobic006G059500--Sobic006G111200 Sobic004G215900 Sobic004G215900 Sobic006G059500--Sobic004G215900 Sobic007G060600 Sobic007G060600 Sobic006G059500--Sobic007G060600 Sobic006G140400 Sobic006G140400 Sobic006G059500--Sobic006G140400 Sobic001G453500 Sobic001G453500 Sobic006G059500--Sobic001G453500 Sobic009G142000 Sobic009G142000 Sobic006G059500--Sobic009G142000 Sobic004G266300 Sobic004G266300 Sobic005G168300--Sobic004G266300 Sobic010G256000 Sobic010G256000 Sobic005G168300--Sobic010G256000 Sobic006G073100 Sobic006G073100 Sobic005G168300--Sobic006G073100 Sobic005G168300--Sobic003G420000 Sobic005G168300--Sobic009G253400 Sobic005G168300--Sobic002G218700 Sobic005G168300--Sobic001G187800 Sobic005G168300--Sobic004G217900 Sobic004G227500 Sobic004G227500 Sobic005G168300--Sobic004G227500 Sobic006G109400 Sobic006G109400 Sobic007G030000--Sobic006G109400 Sobic007G030000--Sobic006G111200 Sobic002G084400 Sobic002G084400 Sobic007G030000--Sobic002G084400 Sobic002G172500 Sobic002G172500 Sobic007G030000--Sobic002G172500 Sobic008G171500 Sobic008G171500 Sobic007G030000--Sobic008G171500 Sobic007G030000--Sobic001G049800 Sobic003G322200 Sobic003G322200 Sobic007G030000--Sobic003G322200 Sobic002G378100 Sobic002G378100 Sobic007G030000--Sobic002G378100 Sobic010G153300 Sobic010G153300 Sobic007G030000--Sobic010G153300 Sobic001G009400 Sobic001G009400 Sobic001G187800--Sobic001G009400 Sobic009G155400 Sobic009G155400 Sobic001G187800--Sobic009G155400 Sobic001G448100 Sobic001G448100 Sobic001G187800--Sobic001G448100 Sobic001G187800--Sobic006G111200 Sobic001G187800--Sobic004G217900 Sobic006G262700 Sobic006G262700 Sobic001G187800--Sobic006G262700 Sobic009G108400 Sobic009G108400 Sobic001G187800--Sobic009G108400 Sobic001G347100 Sobic001G347100 Sobic001G187800--Sobic001G347100 Sobic005G011000 Sobic005G011000 Sobic001G187800--Sobic005G011000
Octagon: transcription factors


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