Gene annotation
Transcriptome id Sobic.007G145100.1,Sobic.007G145100.2
Synonym Sb07g021990
Functional annotation SGT1 protein, putative, expressed
UniProt A0A1Z5R9Z2 , A0A1Z5RA25
Pfam PF07093
Panther DB PTHR13060
NCBI CDD KOG2406; MADS box transcription factor
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G65490 : -
RAP-DB (Rice) LOC_Os08g34740.1 : SGT1 protein, putative, expressed
MaizeGDB (Corn) Zm00025a005821
Brachypodium PNT68215 , KQJ98502
Barley HORVU7Hr1G027710.2 , HORVU7Hr1G027710.4 , HORVU7Hr1G027710.3 , HORVU7Hr1G027710.1
Wheat TraesCS7B02G033800 , TraesCS7A02G133000 , TraesCS7D02G132600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G377800 heat shock protein DnaJ, putative, expressed -
2 Sobic.001G544500 expressed protein -
3 Sobic.010G228700 ATCPSF30/CPSF30, putative, expressed K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
4 Sobic.002G399200 - K14779: DDX52, ATP-dependent RNA helicase DDX52/ROK1
5 Sobic.002G052400 PPR repeat containing protein, expressed -
6 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
7 Sobic.001G362300 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12900: FUS-interacting serine-arginine-rich protein 1
8 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
9 Sobic.008G022701 - K17710: pentatricopeptide repeat domain-containing protein 1
10 Sobic.001G008000 PPR repeat domain containing protein, putative, expressed -
11 Sobic.002G040800 CAMK_CAMK_like.31 - CAMK includes calcium/calmodulin depedent protein kinases, expressed K13412: calcium-dependent protein kinase
12 Sobic.002G238000 RNA 3-terminal phosphate cyclase, putative, expressed K11108: RNA 3'-terminal phosphate cyclase-like protein
13 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27
14 Sobic.009G105200 PPR repeat containing protein, expressed -
15 Sobic.004G211100 RNA binding protein, putative, expressed K11090: LA, lupus La protein
16 Sobic.002G146400 - -
17 Sobic.003G098900 - -
18 Sobic.008G165900 similar to DEAD-box ATP-dependent RNA helicase 9(PubMedID : 29862293)@- -
19 Sobic.001G502600 tetratricopeptide repeat containing protein, putative, expressed -
20 Sobic.001G409500 WD domain, G-beta repeat domain containing protein, expressed K11804: DDB1- and CUL4-associated factor 8


Gene co-expression network
sample Sobic007G145100 Sobic007G145100 Sobic002G377800 Sobic002G377800 Sobic007G145100--Sobic002G377800 Sobic001G544500 Sobic001G544500 Sobic007G145100--Sobic001G544500 Sobic010G228700 Sobic010G228700 Sobic007G145100--Sobic010G228700 Sobic002G399200 Sobic002G399200 Sobic007G145100--Sobic002G399200 Sobic002G052400 Sobic002G052400 Sobic007G145100--Sobic002G052400 Sobic005G100900 Sobic005G100900 Sobic007G145100--Sobic005G100900 Sobic001G362300 Sobic001G362300 Sobic007G145100--Sobic001G362300 Sobic001G119600 Sobic001G119600 Sobic007G145100--Sobic001G119600 Sobic008G022701 Sobic008G022701 Sobic007G145100--Sobic008G022701 Sobic002G377800--Sobic007G145100 Sobic002G082100 Sobic002G082100 Sobic002G377800--Sobic002G082100 Sobic002G377800--Sobic002G052400 Sobic009G105200 Sobic009G105200 Sobic002G377800--Sobic009G105200 Sobic002G377800--Sobic008G022701 Sobic010G138900 Sobic010G138900 Sobic002G377800--Sobic010G138900 Sobic002G184400 Sobic002G184400 Sobic002G377800--Sobic002G184400 Sobic002G377800--Sobic001G544500 Sobic003G209400 Sobic003G209400 Sobic002G377800--Sobic003G209400 Sobic001G544500--Sobic010G228700 Sobic003G285000 Sobic003G285000 Sobic001G544500--Sobic003G285000 Sobic002G040800 Sobic002G040800 Sobic001G544500--Sobic002G040800 Sobic008G051200 Sobic008G051200 Sobic001G544500--Sobic008G051200 Sobic001G222250 Sobic001G222250 Sobic001G544500--Sobic001G222250 Sobic001G544500--Sobic009G105200 Sobic001G453400 Sobic001G453400 Sobic001G544500--Sobic001G453400 Sobic004G321700 Sobic004G321700 Sobic001G544500--Sobic004G321700 Sobic001G003500 Sobic001G003500 Sobic001G544500--Sobic001G003500 Sobic010G228700--Sobic001G544500 Sobic010G228700--Sobic002G040800 Sobic009G105800 Sobic009G105800 Sobic010G228700--Sobic009G105800 Sobic010G228700--Sobic009G105200 Sobic010G171100 Sobic010G171100 Sobic010G228700--Sobic010G171100 Sobic007G000300 Sobic007G000300 Sobic010G228700--Sobic007G000300 Sobic002G238000 Sobic002G238000 Sobic010G228700--Sobic002G238000 Sobic001G119900 Sobic001G119900 Sobic010G228700--Sobic001G119900 Sobic006G125900 Sobic006G125900 Sobic010G228700--Sobic006G125900 Sobic002G262100 Sobic002G262100 Sobic002G399200--Sobic002G262100 Sobic008G163500 Sobic008G163500 Sobic002G399200--Sobic008G163500 Sobic009G235200 Sobic009G235200 Sobic002G399200--Sobic009G235200 Sobic004G173100 Sobic004G173100 Sobic002G399200--Sobic004G173100 Sobic003G425100 Sobic003G425100 Sobic002G399200--Sobic003G425100 Sobic002G177500 Sobic002G177500 Sobic002G399200--Sobic002G177500 Sobic006G226300 Sobic006G226300 Sobic002G399200--Sobic006G226300 Sobic009G163600 Sobic009G163600 Sobic002G399200--Sobic009G163600 Sobic009G040500 Sobic009G040500 Sobic002G399200--Sobic009G040500 Sobic004G351800 Sobic004G351800 Sobic002G052400--Sobic004G351800 Sobic008G017100 Sobic008G017100 Sobic002G052400--Sobic008G017100 Sobic002G052400--Sobic002G377800 Sobic002G052400--Sobic009G105200 Sobic002G052400--Sobic007G145100 Sobic001G261900 Sobic001G261900 Sobic002G052400--Sobic001G261900 Sobic002G373950 Sobic002G373950 Sobic002G052400--Sobic002G373950 Sobic002G052400--Sobic008G022701 Sobic002G052400--Sobic010G228700 Sobic005G100900--Sobic002G238000 Sobic009G071700 Sobic009G071700 Sobic005G100900--Sobic009G071700 Sobic007G114000 Sobic007G114000 Sobic005G100900--Sobic007G114000 Sobic005G100900--Sobic003G425100 Sobic005G100900--Sobic001G119600 Sobic005G100900--Sobic002G262100 Sobic005G100900--Sobic004G173100 Sobic001G485600 Sobic001G485600 Sobic005G100900--Sobic001G485600 Sobic008G165900 Sobic008G165900 Sobic005G100900--Sobic008G165900 Sobic006G272200 Sobic006G272200 Sobic001G362300--Sobic006G272200 Sobic001G362300--Sobic001G485600 Sobic004G087600 Sobic004G087600 Sobic001G362300--Sobic004G087600 Sobic001G362300--Sobic002G238000 Sobic001G362300--Sobic008G165900 Sobic001G362300--Sobic005G100900 Sobic003G123000 Sobic003G123000 Sobic001G362300--Sobic003G123000 Sobic001G362300--Sobic002G399200 Sobic002G146400 Sobic002G146400 Sobic001G362300--Sobic002G146400 Sobic001G119600--Sobic002G262100 Sobic010G224700 Sobic010G224700 Sobic001G119600--Sobic010G224700 Sobic003G123200 Sobic003G123200 Sobic001G119600--Sobic003G123200 Sobic001G119600--Sobic003G425100 Sobic002G378100 Sobic002G378100 Sobic001G119600--Sobic002G378100 Sobic001G119600--Sobic008G163500 Sobic008G049100 Sobic008G049100 Sobic001G119600--Sobic008G049100 Sobic006G198600 Sobic006G198600 Sobic001G119600--Sobic006G198600 Sobic006G231800 Sobic006G231800 Sobic001G119600--Sobic006G231800 Sobic003G332900 Sobic003G332900 Sobic008G022701--Sobic003G332900 Sobic001G008000 Sobic001G008000 Sobic008G022701--Sobic001G008000 Sobic008G022701--Sobic001G119600 Sobic008G022701--Sobic002G052400 Sobic008G022701--Sobic007G145100 Sobic008G022701--Sobic005G100900 Sobic001G157300 Sobic001G157300 Sobic008G022701--Sobic001G157300 Sobic001G502600 Sobic001G502600 Sobic008G022701--Sobic001G502600 Sobic004G027300 Sobic004G027300 Sobic008G022701--Sobic004G027300
Octagon: transcription factors


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