Gene annotation
Transcriptome id Sobic.001G409500.1
Synonym Sb01g038680
Functional annotation WD domain, G-beta repeat domain containing protein, expressed
UniProt C5WNL1
Pfam PF00400
Panther DB PTHR15574
NCBI CDD KOG1334; WD40 repeat protein
KEGG Orthology K11804; DDB1- and CUL4-associated factor 8
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G45620 : Transducin/WD40 repeat-like superfamily protein
RAP-DB (Rice) LOC_Os03g17780.1 : WD domain, G-beta repeat domain containing protein, expressed
MaizeGDB (Corn) Zm00025a001947
Brachypodium -
Barley HORVU4Hr1G057080.4 , HORVU4Hr1G057080.5 , HORVU4Hr1G057080.2 , HORVU4Hr1G057080.3 , HORVU4Hr1G057080.1
Wheat TraesCS4A02G106900 , TraesCS4A02G106900 , TraesCS4B02G197400 , TraesCS4B02G197400
Populus -


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cDNA sequences
Sobic.001G409500


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G119600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@zinc finger family protein, putative, expressed -
2 Sobic.003G332900 expressed protein K14404: CPSF4, cleavage and polyadenylation specificity factor subunit 4
3 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
4 Sobic.005G100900 DAG protein, chloroplast precursor, putative, expressed -
5 Sobic.004G231600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
6 Sobic.002G262100 - K13181: DDX27, ATP-dependent RNA helicase DDX27
7 Sobic.002G146400 - -
8 Sobic.006G231800 double-strand break repair protein MRE11, putative, expressed K10865: double-strand break repair protein MRE11
9 Sobic.002G399200 - K14779: DDX52, ATP-dependent RNA helicase DDX52/ROK1
10 Sobic.001G224200 nucleolin, putative, expressed K11294: NCL, nucleolin
11 Sobic.008G165900 similar to DEAD-box ATP-dependent RNA helicase 9(PubMedID : 29862293)@- -
12 Sobic.009G071700 O-sialoglycoprotein endopeptidase, putative, expressed K01409: KAE1, tsaD, N6-L-threonylcarbamoyladenine synthase
13 Sobic.007G145100 SGT1 protein, putative, expressed -
14 Sobic.009G065200 zinc finger family protein, putative, expressed -
15 Sobic.001G422500 N-dimethylguanosine tRNA methyltransferase, putative, expressed K00555: TRMT1, tRNA (guanine26-N2/guanine27-N2)-dimethyltransferase
16 Sobic.010G224700 - K17680: twinkle protein
17 Sobic.007G168200 peptidyl-prolyl cis-trans isomerase, putative, expressed K12733: peptidyl-prolyl cis-trans isomerase-like 1
18 Sobic.001G362300 Putative splicing factor(PubMedID : 24356560)@RNA recognition motif containing protein, putative, expressed K12900: FUS-interacting serine-arginine-rich protein 1
19 Sobic.010G016600 CAMK_CAMK_like.6 - CAMK includes calcium/calmodulin depedent protein kinases, expressed -
20 Sobic.008G163500 WD domain, G-beta repeat domain containing protein, expressed K14552: NAN1, UTP17, NET1-associated nuclear protein 1 (U3 small nucleolar RNA-associated protein 17)


Gene co-expression network
sample Sobic001G409500 Sobic001G409500 Sobic001G119600 Sobic001G119600 Sobic001G409500--Sobic001G119600 Sobic003G332900 Sobic003G332900 Sobic001G409500--Sobic003G332900 Sobic003G425100 Sobic003G425100 Sobic001G409500--Sobic003G425100 Sobic005G100900 Sobic005G100900 Sobic001G409500--Sobic005G100900 Sobic004G231600 Sobic004G231600 Sobic001G409500--Sobic004G231600 Sobic002G262100 Sobic002G262100 Sobic001G409500--Sobic002G262100 Sobic002G146400 Sobic002G146400 Sobic001G409500--Sobic002G146400 Sobic006G231800 Sobic006G231800 Sobic001G409500--Sobic006G231800 Sobic002G399200 Sobic002G399200 Sobic001G409500--Sobic002G399200 Sobic001G119600--Sobic002G262100 Sobic010G224700 Sobic010G224700 Sobic001G119600--Sobic010G224700 Sobic003G123200 Sobic003G123200 Sobic001G119600--Sobic003G123200 Sobic001G119600--Sobic003G425100 Sobic002G378100 Sobic002G378100 Sobic001G119600--Sobic002G378100 Sobic008G163500 Sobic008G163500 Sobic001G119600--Sobic008G163500 Sobic008G049100 Sobic008G049100 Sobic001G119600--Sobic008G049100 Sobic006G198600 Sobic006G198600 Sobic001G119600--Sobic006G198600 Sobic001G119600--Sobic006G231800 Sobic008G165900 Sobic008G165900 Sobic003G332900--Sobic008G165900 Sobic010G211500 Sobic010G211500 Sobic003G332900--Sobic010G211500 Sobic003G332900--Sobic004G231600 Sobic001G207200 Sobic001G207200 Sobic003G332900--Sobic001G207200 Sobic008G022701 Sobic008G022701 Sobic003G332900--Sobic008G022701 Sobic002G131000 Sobic002G131000 Sobic003G332900--Sobic002G131000 Sobic001G224200 Sobic001G224200 Sobic003G332900--Sobic001G224200 Sobic009G238100 Sobic009G238100 Sobic003G332900--Sobic009G238100 Sobic006G128400 Sobic006G128400 Sobic003G332900--Sobic006G128400 Sobic009G163600 Sobic009G163600 Sobic003G425100--Sobic009G163600 Sobic005G028100 Sobic005G028100 Sobic003G425100--Sobic005G028100 Sobic004G027300 Sobic004G027300 Sobic003G425100--Sobic004G027300 Sobic006G225400 Sobic006G225400 Sobic003G425100--Sobic006G225400 Sobic003G425100--Sobic010G224700 Sobic009G071700 Sobic009G071700 Sobic003G425100--Sobic009G071700 Sobic003G436600 Sobic003G436600 Sobic003G425100--Sobic003G436600 Sobic003G425100--Sobic006G198600 Sobic004G036700 Sobic004G036700 Sobic003G425100--Sobic004G036700 Sobic002G238000 Sobic002G238000 Sobic005G100900--Sobic002G238000 Sobic005G100900--Sobic009G071700 Sobic007G114000 Sobic007G114000 Sobic005G100900--Sobic007G114000 Sobic005G100900--Sobic003G425100 Sobic005G100900--Sobic001G119600 Sobic005G100900--Sobic002G262100 Sobic004G173100 Sobic004G173100 Sobic005G100900--Sobic004G173100 Sobic001G485600 Sobic001G485600 Sobic005G100900--Sobic001G485600 Sobic005G100900--Sobic008G165900 Sobic004G231600--Sobic003G425100 Sobic004G231600--Sobic003G332900 Sobic004G231600--Sobic002G131000 Sobic004G231600--Sobic004G027300 Sobic004G231600--Sobic008G165900 Sobic004G231600--Sobic001G207200 Sobic004G231600--Sobic002G378100 Sobic001G422500 Sobic001G422500 Sobic004G231600--Sobic001G422500 Sobic004G231600--Sobic006G128400 Sobic002G262100--Sobic001G119600 Sobic002G262100--Sobic002G399200 Sobic002G262100--Sobic002G378100 Sobic002G262100--Sobic008G163500 Sobic002G262100--Sobic001G422500 Sobic001G157300 Sobic001G157300 Sobic002G262100--Sobic001G157300 Sobic002G262100--Sobic004G173100 Sobic002G262100--Sobic003G425100 Sobic002G262100--Sobic006G198600 Sobic003G324100 Sobic003G324100 Sobic002G146400--Sobic003G324100 Sobic002G146400--Sobic001G422500 Sobic002G146400--Sobic003G332900 Sobic001G362300 Sobic001G362300 Sobic002G146400--Sobic001G362300 Sobic002G146400--Sobic005G100900 Sobic002G146400--Sobic001G485600 Sobic002G146400--Sobic002G262100 Sobic002G146400--Sobic008G165900 Sobic001G322600 Sobic001G322600 Sobic002G146400--Sobic001G322600 Sobic006G231800--Sobic001G422500 Sobic009G145101 Sobic009G145101 Sobic006G231800--Sobic009G145101 Sobic006G231800--Sobic002G378100 Sobic006G185200 Sobic006G185200 Sobic006G231800--Sobic006G185200 Sobic009G213200 Sobic009G213200 Sobic006G231800--Sobic009G213200 Sobic006G049600 Sobic006G049600 Sobic006G231800--Sobic006G049600 Sobic006G231800--Sobic001G119600 Sobic010G003400 Sobic010G003400 Sobic006G231800--Sobic010G003400 Sobic002G373950 Sobic002G373950 Sobic006G231800--Sobic002G373950 Sobic002G399200--Sobic002G262100 Sobic002G399200--Sobic008G163500 Sobic009G235200 Sobic009G235200 Sobic002G399200--Sobic009G235200 Sobic002G399200--Sobic004G173100 Sobic002G399200--Sobic003G425100 Sobic002G177500 Sobic002G177500 Sobic002G399200--Sobic002G177500 Sobic006G226300 Sobic006G226300 Sobic002G399200--Sobic006G226300 Sobic002G399200--Sobic009G163600 Sobic009G040500 Sobic009G040500 Sobic002G399200--Sobic009G040500
Octagon: transcription factors


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