Gene annotation
Transcriptome id Sobic.009G065200.1,Sobic.009G065200.2
Synonym Sb09g005450
Functional annotation zinc finger family protein, putative, expressed
UniProt C5Z171
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF143
NCBI CDD KOG1493; Anaphase-promoting complex (APC), subunit 11
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G80400 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os05g08610.4,LOC_Os05g08610.3 : zinc finger family protein, putative, expressed
MaizeGDB (Corn) Zm00025a043032
Brachypodium KQK03006 , KQK07220 , KQK07221 , KQK07222
Barley HORVU6Hr1G083430.1 , HORVU6Hr1G083430.2 , HORVU6Hr1G083430.3 , HORVU6Hr1G083430.4 , HORVU6Hr1G083430.5 , HORVU6Hr1G083430.6 , HORVU6Hr1G083430.7 , HORVU6Hr1G083430.8 , HORVU6Hr1G083430.9 , HORVU1Hr1G025600.4 , HORVU1Hr1G025600.5 , HORVU1Hr1G025600.6 , HORVU1Hr1G025600.7 , HORVU1Hr1G025600.1 , HORVU1Hr1G025600.2 , HORVU1Hr1G025600.3 , HORVU1Hr1G025600.8
Wheat TraesCS6D02G328700 , TraesCS6D02G328700 , TraesCS1B02G138300
Populus -


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cDNA sequences
Sobic.009G065200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G126200 alveolar soft part sarcoma chromosome region, candidate 1, putative, expressed K15627: ASPSCR1, tether containing UBX domain for GLUT4
2 Sobic.001G380500 appr-1-p processing enzyme family protein, putative, expressed -
3 Sobic.007G168200 peptidyl-prolyl cis-trans isomerase, putative, expressed K12733: peptidyl-prolyl cis-trans isomerase-like 1
4 Sobic.008G080000 leucine-rich repeat family protein, putative, expressed -
5 Sobic.001G543300 dehydrogenase, putative, expressed -
6 Sobic.001G294200 casein kinase II subunit beta-4, putative, expressed K03115: casein kinase II subunit beta
7 Sobic.008G103900 glycine-rich RNA-binding protein 7, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
8 Sobic.001G202400 cytochrome b5-like Heme/Steroid binding domain containing protein, expressed K17278: membrane-associated progesterone receptor component
9 Sobic.009G193850 - -
10 Sobic.009G233700 CobW/P47K family protein, putative, expressed K03189: urease accessory protein
11 Sobic.001G409500 WD domain, G-beta repeat domain containing protein, expressed K11804: DDB1- and CUL4-associated factor 8
12 Sobic.003G330200 cupin, RmlC-type, putative, expressed -
13 Sobic.006G264500 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
14 Sobic.003G425100 "Protein OSB3, chloroplastic/mitochondrial"(PubMedID : 24906815)@single-stranded DNA-binding protein, putative, expressed -
15 Sobic.010G108900 RAD23 DNA repair protein, putative, expressed K10839: RAD23, UV excision repair protein RAD23
16 Sobic.004G140300 delta14-sterol reductase, putative, expressed K00213: 7-dehydrocholesterol reductase
17 Sobic.006G233300 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
18 Sobic.003G309300 radical SAM enzyme, putative, expressed K03644: lipA, LIAS, LIP1, lipoyl synthase
19 Sobic.001G039800 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed -
20 Sobic.002G242200 expressed protein -


Gene co-expression network
sample Sobic009G065200 Sobic009G065200 Sobic006G126200 Sobic006G126200 Sobic009G065200--Sobic006G126200 Sobic001G380500 Sobic001G380500 Sobic009G065200--Sobic001G380500 Sobic007G168200 Sobic007G168200 Sobic009G065200--Sobic007G168200 Sobic008G080000 Sobic008G080000 Sobic009G065200--Sobic008G080000 Sobic001G543300 Sobic001G543300 Sobic009G065200--Sobic001G543300 Sobic001G294200 Sobic001G294200 Sobic009G065200--Sobic001G294200 Sobic008G103900 Sobic008G103900 Sobic009G065200--Sobic008G103900 Sobic001G202400 Sobic001G202400 Sobic009G065200--Sobic001G202400 Sobic009G193850 Sobic009G193850 Sobic009G065200--Sobic009G193850 Sobic006G183000 Sobic006G183000 Sobic006G126200--Sobic006G183000 Sobic002G256200 Sobic002G256200 Sobic006G126200--Sobic002G256200 Sobic006G094600 Sobic006G094600 Sobic006G126200--Sobic006G094600 Sobic001G444300 Sobic001G444300 Sobic006G126200--Sobic001G444300 Sobic010G073100 Sobic010G073100 Sobic006G126200--Sobic010G073100 Sobic008G145100 Sobic008G145100 Sobic006G126200--Sobic008G145100 Sobic001G294900 Sobic001G294900 Sobic006G126200--Sobic001G294900 Sobic004G075200 Sobic004G075200 Sobic006G126200--Sobic004G075200 Sobic001G404200 Sobic001G404200 Sobic006G126200--Sobic001G404200 Sobic009G029700 Sobic009G029700 Sobic001G380500--Sobic009G029700 Sobic010G108900 Sobic010G108900 Sobic001G380500--Sobic010G108900 Sobic001G380500--Sobic007G168200 Sobic007G029100 Sobic007G029100 Sobic001G380500--Sobic007G029100 Sobic001G218800 Sobic001G218800 Sobic001G380500--Sobic001G218800 Sobic002G039000 Sobic002G039000 Sobic001G380500--Sobic002G039000 Sobic006G168400 Sobic006G168400 Sobic001G380500--Sobic006G168400 Sobic001G418800 Sobic001G418800 Sobic001G380500--Sobic001G418800 Sobic002G404200 Sobic002G404200 Sobic001G380500--Sobic002G404200 Sobic007G168200--Sobic001G380500 Sobic009G190800 Sobic009G190800 Sobic007G168200--Sobic009G190800 Sobic001G039800 Sobic001G039800 Sobic007G168200--Sobic001G039800 Sobic007G168200--Sobic001G294200 Sobic006G269000 Sobic006G269000 Sobic007G168200--Sobic006G269000 Sobic007G168200--Sobic009G065200 Sobic001G341800 Sobic001G341800 Sobic007G168200--Sobic001G341800 Sobic004G214100 Sobic004G214100 Sobic007G168200--Sobic004G214100 Sobic003G103200 Sobic003G103200 Sobic007G168200--Sobic003G103200 Sobic008G080000--Sobic009G193850 Sobic001G486000 Sobic001G486000 Sobic008G080000--Sobic001G486000 Sobic003G408300 Sobic003G408300 Sobic008G080000--Sobic003G408300 Sobic002G177500 Sobic002G177500 Sobic008G080000--Sobic002G177500 Sobic008G080000--Sobic009G065200 Sobic008G111700 Sobic008G111700 Sobic008G080000--Sobic008G111700 Sobic002G148300 Sobic002G148300 Sobic008G080000--Sobic002G148300 Sobic002G088700 Sobic002G088700 Sobic008G080000--Sobic002G088700 Sobic004G057800 Sobic004G057800 Sobic008G080000--Sobic004G057800 Sobic001G543300--Sobic001G294200 Sobic007G167700 Sobic007G167700 Sobic001G543300--Sobic007G167700 Sobic007G203700 Sobic007G203700 Sobic001G543300--Sobic007G203700 Sobic008G058300 Sobic008G058300 Sobic001G543300--Sobic008G058300 Sobic004G316900 Sobic004G316900 Sobic001G543300--Sobic004G316900 Sobic001G129300 Sobic001G129300 Sobic001G543300--Sobic001G129300 Sobic004G060600 Sobic004G060600 Sobic001G543300--Sobic004G060600 Sobic004G018800 Sobic004G018800 Sobic001G543300--Sobic004G018800 Sobic006G242300 Sobic006G242300 Sobic001G543300--Sobic006G242300 Sobic003G078800 Sobic003G078800 Sobic001G294200--Sobic003G078800 Sobic001G294200--Sobic001G543300 Sobic006G262900 Sobic006G262900 Sobic001G294200--Sobic006G262900 Sobic001G512600 Sobic001G512600 Sobic001G294200--Sobic001G512600 Sobic009G133400 Sobic009G133400 Sobic001G294200--Sobic009G133400 Sobic002G129000 Sobic002G129000 Sobic001G294200--Sobic002G129000 Sobic001G365800 Sobic001G365800 Sobic001G294200--Sobic001G365800 Sobic004G301900 Sobic004G301900 Sobic001G294200--Sobic004G301900 Sobic001G078800 Sobic001G078800 Sobic001G294200--Sobic001G078800 Sobic007G034400 Sobic007G034400 Sobic008G103900--Sobic007G034400 Sobic010G013900 Sobic010G013900 Sobic008G103900--Sobic010G013900 Sobic008G103900--Sobic001G202400 Sobic004G248900 Sobic004G248900 Sobic008G103900--Sobic004G248900 Sobic009G130400 Sobic009G130400 Sobic008G103900--Sobic009G130400 Sobic002G179000 Sobic002G179000 Sobic008G103900--Sobic002G179000 Sobic010G018000 Sobic010G018000 Sobic008G103900--Sobic010G018000 Sobic003G015400 Sobic003G015400 Sobic008G103900--Sobic003G015400 Sobic007G143000 Sobic007G143000 Sobic008G103900--Sobic007G143000 Sobic001G202400--Sobic003G015400 Sobic001G202400--Sobic007G034400 Sobic001G202400--Sobic008G103900 Sobic001G202400--Sobic001G543300 Sobic001G081400 Sobic001G081400 Sobic001G202400--Sobic001G081400 Sobic009G207100 Sobic009G207100 Sobic001G202400--Sobic009G207100 Sobic002G007100 Sobic002G007100 Sobic001G202400--Sobic002G007100 Sobic003G182400 Sobic003G182400 Sobic001G202400--Sobic003G182400 Sobic009G168000 Sobic009G168000 Sobic001G202400--Sobic009G168000 Sobic001G041200 Sobic001G041200 Sobic009G193850--Sobic001G041200 Sobic004G011000 Sobic004G011000 Sobic009G193850--Sobic004G011000 Sobic006G216000 Sobic006G216000 Sobic009G193850--Sobic006G216000 Sobic007G162800 Sobic007G162800 Sobic009G193850--Sobic007G162800 Sobic009G193850--Sobic002G148300 Sobic009G193850--Sobic001G404200 Sobic003G118400 Sobic003G118400 Sobic009G193850--Sobic003G118400 Sobic009G193850--Sobic008G080000 Sobic009G193850--Sobic006G242300
Octagon: transcription factors


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