Gene annotation
Transcriptome id Sobic.006G233300.1
Synonym Sb06g030090, UBA2A
Functional annotation RNA binding protein, putative, expressed
UniProt C5Y8W3
Pfam PF14259 PF00076
Panther DB PTHR24012 PTHR24012:SF490
NCBI CDD KOG0148; Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)
KEGG Orthology K12741; heterogeneous nuclear ribonucleoprotein A1/A3
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT3G56860 : UBP1-associated protein 2A
RAP-DB (Rice) LOC_Os04g54440.2 : RNA binding protein, putative, expressed
MaizeGDB (Corn) Zm00025a057147 , Zm00025a009613
Brachypodium KQJ84859
Barley HORVU2Hr1G116230.3 , HORVU2Hr1G116230.2 , HORVU2Hr1G116150.2 , HORVU2Hr1G116150.3 , HORVU2Hr1G116150.1 , HORVU2Hr1G116150.6 , HORVU2Hr1G116150.7 , HORVU2Hr1G116150.4 , HORVU2Hr1G116150.5 , HORVU2Hr1G116150.8 , HORVU2Hr1G116150.10 , HORVU2Hr1G116150.11 , HORVU2Hr1G116150.12 , HORVU2Hr1G116150.13
Wheat -
Populus -


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cDNA sequences
Sobic.006G233300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G010000 NLI interacting factor-like phosphatase, putative, expressed K17616: CTD small phosphatase-like protein 2
2 Sobic.002G143900 OsFBL19 - F-box domain and LRR containing protein, expressed K10273: F-box and leucine-rich repeat protein 7
3 Sobic.006G233000 protein of unknown function, DUF618 domain containing protein, expressed K15559: regulator of Ty1 transposition protein 103
4 Sobic.003G158700 exocyst complex component 6, putative, expressed -
5 Sobic.002G394800 SWIB/MDM2 domain containing protein, expressed K11650: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
6 Sobic.003G099300 expressed protein K18749: LSM14, RAP55, protein LSM14
7 Sobic.010G239800 hydrolase, NUDIX family, domain containing protein, expressed K12613: mRNA-decapping enzyme subunit 2
8 Sobic.010G247400 Brix domain containing protein, putative, expressed K14561: U3 small nucleolar ribonucleoprotein protein IMP4
9 Sobic.002G280600 hydroxyproline-rich glycoprotein family protein, putative, expressed -
10 Sobic.003G439800 growth inhibition and differentiation-related protein 88, putative, expressed -
11 Sobic.010G269100 zinc finger family protein, putative, expressed -
12 Sobic.010G176500 expressed protein -
13 Sobic.010G085200 mediator of RNA polymerase II transcription subunit 6, putative, expressed K15128: mediator of RNA polymerase II transcription subunit 6
14 Sobic.008G092300 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
15 Sobic.010G279700 signal peptide peptidase-like 2B, putative, expressed -
16 Sobic.008G004400 GIL1, putative, expressed -
17 Sobic.008G153500 KH domain containing protein, putative, expressed K13162: poly(rC)-binding protein 2
18 Sobic.001G291800 eukaryotic translation initiation factor 3 subunit B, putative, expressed K03253: translation initiation factor 3 subunit B
19 Sobic.010G219100 protein kinase APK1B, chloroplast precursor, putative, expressed -
20 Sobic.001G218800 expressed protein -


Gene co-expression network
sample Sobic006G233300 Sobic006G233300 Sobic006G010000 Sobic006G010000 Sobic006G233300--Sobic006G010000 Sobic002G143900 Sobic002G143900 Sobic006G233300--Sobic002G143900 Sobic006G233000 Sobic006G233000 Sobic006G233300--Sobic006G233000 Sobic003G158700 Sobic003G158700 Sobic006G233300--Sobic003G158700 Sobic002G394800 Sobic002G394800 Sobic006G233300--Sobic002G394800 Sobic003G099300 Sobic003G099300 Sobic006G233300--Sobic003G099300 Sobic010G239800 Sobic010G239800 Sobic006G233300--Sobic010G239800 Sobic010G247400 Sobic010G247400 Sobic006G233300--Sobic010G247400 Sobic002G280600 Sobic002G280600 Sobic006G233300--Sobic002G280600 Sobic006G010000--Sobic006G233300 Sobic006G010000--Sobic006G233000 Sobic008G153500 Sobic008G153500 Sobic006G010000--Sobic008G153500 Sobic003G293300 Sobic003G293300 Sobic006G010000--Sobic003G293300 Sobic010G186600 Sobic010G186600 Sobic006G010000--Sobic010G186600 Sobic001G114500 Sobic001G114500 Sobic006G010000--Sobic001G114500 Sobic001G259000 Sobic001G259000 Sobic006G010000--Sobic001G259000 Sobic001G234200 Sobic001G234200 Sobic006G010000--Sobic001G234200 Sobic002G071000 Sobic002G071000 Sobic006G010000--Sobic002G071000 Sobic002G143900--Sobic006G233300 Sobic002G143900--Sobic002G280600 Sobic002G143900--Sobic002G394800 Sobic007G027700 Sobic007G027700 Sobic002G143900--Sobic007G027700 Sobic001G143500 Sobic001G143500 Sobic002G143900--Sobic001G143500 Sobic006G044000 Sobic006G044000 Sobic002G143900--Sobic006G044000 Sobic001G526300 Sobic001G526300 Sobic002G143900--Sobic001G526300 Sobic010G232900 Sobic010G232900 Sobic002G143900--Sobic010G232900 Sobic008G139700 Sobic008G139700 Sobic002G143900--Sobic008G139700 Sobic006G233000--Sobic006G010000 Sobic010G085200 Sobic010G085200 Sobic006G233000--Sobic010G085200 Sobic006G233000--Sobic006G233300 Sobic004G155600 Sobic004G155600 Sobic006G233000--Sobic004G155600 Sobic006G233000--Sobic001G259000 Sobic006G233000--Sobic002G394800 Sobic003G439800 Sobic003G439800 Sobic006G233000--Sobic003G439800 Sobic006G270600 Sobic006G270600 Sobic006G233000--Sobic006G270600 Sobic007G134100 Sobic007G134100 Sobic006G233000--Sobic007G134100 Sobic003G158700--Sobic006G233300 Sobic006G109700 Sobic006G109700 Sobic003G158700--Sobic006G109700 Sobic003G158700--Sobic002G143900 Sobic010G269100 Sobic010G269100 Sobic003G158700--Sobic010G269100 Sobic006G252100 Sobic006G252100 Sobic003G158700--Sobic006G252100 Sobic002G256200 Sobic002G256200 Sobic003G158700--Sobic002G256200 Sobic003G158700--Sobic002G071000 Sobic006G183000 Sobic006G183000 Sobic003G158700--Sobic006G183000 Sobic001G080000 Sobic001G080000 Sobic003G158700--Sobic001G080000 Sobic002G394800--Sobic006G233300 Sobic002G394800--Sobic002G143900 Sobic002G394800--Sobic006G233000 Sobic002G394800--Sobic002G280600 Sobic006G245700 Sobic006G245700 Sobic002G394800--Sobic006G245700 Sobic006G272200 Sobic006G272200 Sobic002G394800--Sobic006G272200 Sobic001G370300 Sobic001G370300 Sobic002G394800--Sobic001G370300 Sobic004G249300 Sobic004G249300 Sobic002G394800--Sobic004G249300 Sobic002G430900 Sobic002G430900 Sobic002G394800--Sobic002G430900 Sobic003G099300--Sobic010G269100 Sobic004G039600 Sobic004G039600 Sobic003G099300--Sobic004G039600 Sobic005G216300 Sobic005G216300 Sobic003G099300--Sobic005G216300 SobicK004100 SobicK004100 Sobic003G099300--SobicK004100 Sobic001G369000 Sobic001G369000 Sobic003G099300--Sobic001G369000 Sobic005G115500 Sobic005G115500 Sobic003G099300--Sobic005G115500 Sobic003G099300--Sobic002G256200 Sobic006G056200 Sobic006G056200 Sobic003G099300--Sobic006G056200 Sobic009G231700 Sobic009G231700 Sobic003G099300--Sobic009G231700 Sobic010G239800--Sobic003G099300 Sobic010G239800--Sobic007G027700 Sobic010G239800--Sobic010G085200 Sobic010G239800--Sobic010G269100 Sobic010G239800--Sobic006G233300 Sobic010G239800--Sobic010G232900 Sobic010G279700 Sobic010G279700 Sobic010G239800--Sobic010G279700 Sobic008G092300 Sobic008G092300 Sobic010G239800--Sobic008G092300 Sobic002G145800 Sobic002G145800 Sobic010G239800--Sobic002G145800 Sobic001G249700 Sobic001G249700 Sobic010G247400--Sobic001G249700 Sobic010G247400--Sobic001G259000 Sobic001G527300 Sobic001G527300 Sobic010G247400--Sobic001G527300 Sobic002G341800 Sobic002G341800 Sobic010G247400--Sobic002G341800 Sobic002G077900 Sobic002G077900 Sobic010G247400--Sobic002G077900 Sobic010G247400--Sobic001G370300 Sobic003G407600 Sobic003G407600 Sobic010G247400--Sobic003G407600 Sobic010G247400--Sobic006G233300 Sobic009G033900 Sobic009G033900 Sobic010G247400--Sobic009G033900 Sobic002G280600--Sobic002G143900 Sobic002G280600--Sobic002G394800 Sobic002G280600--Sobic010G232900 Sobic002G280600--Sobic007G027700 Sobic003G123000 Sobic003G123000 Sobic002G280600--Sobic003G123000 Sobic002G280600--Sobic006G233300 Sobic002G280600--Sobic010G239800 Sobic003G273400 Sobic003G273400 Sobic002G280600--Sobic003G273400 Sobic002G280600--Sobic001G526300
Octagon: transcription factors


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