Gene annotation
Transcriptome id Sobic.010G219100.2
Synonym Sb10g026500
Functional annotation protein kinase APK1B, chloroplast precursor, putative, expressed
UniProt A0A194YLU0
Pfam PF00069
Panther DB PTHR27001 PTHR27001:SF190
NCBI CDD KOG1187; Serine/threonine protein kinase
KEGG Orthology -
Gene Ontology GO:0006468; protein phosphorylation GO:0005524ATP binding GO:0004672protein kinase activity


Orthologs (automatic annotation)
TAIR AT2G07180 : Protein kinase superfamily protein
RAP-DB (Rice) LOC_Os06g45280.1 : protein kinase APK1B, chloroplast precursor, putative, expressed
MaizeGDB (Corn) Zm00025a051730 , Zm00025a041972
Brachypodium KQK16981
Barley HORVU7Hr1G109590.9 , HORVU7Hr1G109590.8 , HORVU7Hr1G109590.3 , HORVU7Hr1G109590.2 , HORVU7Hr1G109590.1 , HORVU7Hr1G109590.7 , HORVU7Hr1G109590.6 , HORVU7Hr1G109590.5 , HORVU7Hr1G109590.4 , HORVU7Hr1G109590.10
Wheat TraesCS7A02G487900 , TraesCS7B02G391200 , TraesCS7D02G474600
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G272600 TBC domain containing protein, expressed -
2 Sobic.003G247900 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D
3 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
4 Sobic.002G129000 RING zinc finger protein, putative, expressed -
5 Sobic.006G183000 RING zinc finger protein, putative, expressed -
6 Sobic.006G257001 - -
7 Sobic.010G193800 zinc finger C-x8-C-x5-C-x3-H type family protein, expressed -
8 Sobic.001G152000 elongation factor Tu family protein, putative, expressed K14536: ribosome assembly protein 1
9 Sobic.009G050700 importin subunit alpha, putative, expressed -
10 Sobic.001G067900 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
11 Sobic.008G004400 GIL1, putative, expressed -
12 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
13 Sobic.003G405700 exo70 exocyst complex subunit domain containing protein, expressed K07195: EXOC7, exocyst complex component 7
14 Sobic.006G233300 RNA binding protein, putative, expressed K12741: heterogeneous nuclear ribonucleoprotein A1/A3
15 Sobic.001G105100 neighbor of COX4, putative, expressed -
16 Sobic.008G111700 expressed protein -
17 Sobic.001G285300 expressed protein -
18 Sobic.009G133400 mTERF domain containing protein, expressed K15032: mTERF domain-containing protein, mitochondrial
19 Sobic.010G251100 - K03257: translation initiation factor 4A
20 Sobic.007G205000 zinc finger family protein, putative, expressed -


Gene co-expression network
sample Sobic010G219100 Sobic010G219100 Sobic002G272600 Sobic002G272600 Sobic010G219100--Sobic002G272600 Sobic003G247900 Sobic003G247900 Sobic010G219100--Sobic003G247900 Sobic008G137600 Sobic008G137600 Sobic010G219100--Sobic008G137600 Sobic002G129000 Sobic002G129000 Sobic010G219100--Sobic002G129000 Sobic006G183000 Sobic006G183000 Sobic010G219100--Sobic006G183000 Sobic006G257001 Sobic006G257001 Sobic010G219100--Sobic006G257001 Sobic010G193800 Sobic010G193800 Sobic010G219100--Sobic010G193800 Sobic001G152000 Sobic001G152000 Sobic010G219100--Sobic001G152000 Sobic009G050700 Sobic009G050700 Sobic010G219100--Sobic009G050700 Sobic001G061700 Sobic001G061700 Sobic002G272600--Sobic001G061700 Sobic001G080000 Sobic001G080000 Sobic002G272600--Sobic001G080000 Sobic001G143500 Sobic001G143500 Sobic002G272600--Sobic001G143500 Sobic003G405700 Sobic003G405700 Sobic002G272600--Sobic003G405700 Sobic010G105600 Sobic010G105600 Sobic002G272600--Sobic010G105600 Sobic007G205000 Sobic007G205000 Sobic002G272600--Sobic007G205000 Sobic003G038600 Sobic003G038600 Sobic002G272600--Sobic003G038600 Sobic003G350600 Sobic003G350600 Sobic002G272600--Sobic003G350600 Sobic002G272600--Sobic010G219100 Sobic003G247900--Sobic003G038600 Sobic003G247900--Sobic010G219100 Sobic001G507400 Sobic001G507400 Sobic003G247900--Sobic001G507400 Sobic008G111700 Sobic008G111700 Sobic003G247900--Sobic008G111700 Sobic001G285300 Sobic001G285300 Sobic003G247900--Sobic001G285300 Sobic001G532100 Sobic001G532100 Sobic003G247900--Sobic001G532100 Sobic003G247900--Sobic002G272600 Sobic006G094600 Sobic006G094600 Sobic003G247900--Sobic006G094600 Sobic002G077900 Sobic002G077900 Sobic003G247900--Sobic002G077900 Sobic008G137600--Sobic001G532100 Sobic001G402300 Sobic001G402300 Sobic008G137600--Sobic001G402300 Sobic001G294900 Sobic001G294900 Sobic008G137600--Sobic001G294900 Sobic002G428200 Sobic002G428200 Sobic008G137600--Sobic002G428200 Sobic003G273400 Sobic003G273400 Sobic008G137600--Sobic003G273400 Sobic006G109700 Sobic006G109700 Sobic008G137600--Sobic006G109700 Sobic002G341800 Sobic002G341800 Sobic008G137600--Sobic002G341800 Sobic001G404100 Sobic001G404100 Sobic008G137600--Sobic001G404100 Sobic001G502200 Sobic001G502200 Sobic008G137600--Sobic001G502200 Sobic002G129000--Sobic006G183000 Sobic001G439600 Sobic001G439600 Sobic002G129000--Sobic001G439600 Sobic002G129000--Sobic009G050700 Sobic002G129000--Sobic001G294900 Sobic002G400000 Sobic002G400000 Sobic002G129000--Sobic002G400000 Sobic010G168600 Sobic010G168600 Sobic002G129000--Sobic010G168600 Sobic001G136900 Sobic001G136900 Sobic002G129000--Sobic001G136900 Sobic006G263900 Sobic006G263900 Sobic002G129000--Sobic006G263900 Sobic002G129000--Sobic003G405700 Sobic006G183000--Sobic002G129000 Sobic006G183000--Sobic001G294900 Sobic009G033900 Sobic009G033900 Sobic006G183000--Sobic009G033900 Sobic006G183000--Sobic006G109700 Sobic002G268400 Sobic002G268400 Sobic006G183000--Sobic002G268400 Sobic006G183000--Sobic001G136900 Sobic006G183000--Sobic009G050700 Sobic006G183000--Sobic003G405700 Sobic006G183000--Sobic006G094600 Sobic001G067900 Sobic001G067900 Sobic006G257001--Sobic001G067900 Sobic006G034800 Sobic006G034800 Sobic006G257001--Sobic006G034800 Sobic001G105100 Sobic001G105100 Sobic006G257001--Sobic001G105100 Sobic001G237500 Sobic001G237500 Sobic006G257001--Sobic001G237500 Sobic001G041200 Sobic001G041200 Sobic006G257001--Sobic001G041200 Sobic002G131900 Sobic002G131900 Sobic006G257001--Sobic002G131900 Sobic006G257001--Sobic010G105600 Sobic003G217100 Sobic003G217100 Sobic006G257001--Sobic003G217100 Sobic002G301300 Sobic002G301300 Sobic006G257001--Sobic002G301300 Sobic003G420700 Sobic003G420700 Sobic010G193800--Sobic003G420700 Sobic004G356900 Sobic004G356900 Sobic010G193800--Sobic004G356900 Sobic002G256300 Sobic002G256300 Sobic010G193800--Sobic002G256300 Sobic010G193800--Sobic001G532100 Sobic006G225300 Sobic006G225300 Sobic010G193800--Sobic006G225300 Sobic007G203700 Sobic007G203700 Sobic010G193800--Sobic007G203700 Sobic010G193800--Sobic001G439600 Sobic004G141700 Sobic004G141700 Sobic010G193800--Sobic004G141700 Sobic009G246950 Sobic009G246950 Sobic010G193800--Sobic009G246950 Sobic001G152000--Sobic002G268400 Sobic004G074300 Sobic004G074300 Sobic001G152000--Sobic004G074300 Sobic001G152000--Sobic009G033900 Sobic001G152000--Sobic001G294900 Sobic004G019600 Sobic004G019600 Sobic001G152000--Sobic004G019600 Sobic006G252100 Sobic006G252100 Sobic001G152000--Sobic006G252100 Sobic001G009800 Sobic001G009800 Sobic001G152000--Sobic001G009800 Sobic001G152000--Sobic003G405700 Sobic001G152000--Sobic006G183000 Sobic009G050700--Sobic002G129000 Sobic009G050700--Sobic006G183000 Sobic009G050700--Sobic003G405700 Sobic006G278700 Sobic006G278700 Sobic009G050700--Sobic006G278700 Sobic006G101700 Sobic006G101700 Sobic009G050700--Sobic006G101700 Sobic009G050700--Sobic004G356900 Sobic009G050700--Sobic006G225300 Sobic003G226500 Sobic003G226500 Sobic009G050700--Sobic003G226500 Sobic001G085100 Sobic001G085100 Sobic009G050700--Sobic001G085100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.