Gene annotation
Transcriptome id Sobic.006G257001.1
Synonym -
Functional annotation -
UniProt A0A1Z5RGN4
Pfam PF04051
Panther DB PTHR13048
NCBI CDD KOG3330; Transport protein particle (TRAPP) complex subunit
KEGG Orthology -
Gene Ontology GO:0016192; vesicle-mediated transport


Orthologs (automatic annotation)
TAIR AT5G54750 : Transport protein particle (TRAPP) component
RAP-DB (Rice) LOC_Os03g28400.1 : transport protein particle component, Bet3, domain containing protein, expressed
MaizeGDB (Corn) Zm00025a009395 , Zm00025a057314
Brachypodium KQK14966
Barley HORVU2Hr1G025780.2 , HORVU2Hr1G025780.1
Wheat TraesCS2D02G149300 , TraesCS2D02G149100 , TraesCS2D02G149300 , TraesCS2A02G145500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G067900 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
2 Sobic.006G034800 neighbor of COX4, putative, expressed -
3 Sobic.001G105100 neighbor of COX4, putative, expressed -
4 Sobic.001G237500 transporter family protein, putative, expressed -
5 Sobic.001G041200 peptidyl-prolyl cis-trans isomerase, putative, expressed K09567: PPIH, peptidyl-prolyl isomerase H (cyclophilin H)
6 Sobic.002G131900 expressed protein -
7 Sobic.010G105600 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
8 Sobic.003G217100 Yip1 domain containing protein, expressed -
9 Sobic.002G301300 SNF7 domain containing protein, putative, expressed K12193: VPS24, charged multivesicular body protein 3
10 Sobic.003G400100 leaf senescence related protein, putative, expressed -
11 Sobic.003G052400 proline-rich family protein, putative, expressed -
12 Sobic.010G205300 secreted salivary protein, putative, expressed -
13 Sobic.010G219100 protein kinase APK1B, chloroplast precursor, putative, expressed -
14 Sobic.001G061700 "similar to BTB/POZ domain containing protein, expressed"(PubMedID : 29862293)@MBTB3 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
15 Sobic.004G072800 expressed protein -
16 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
17 Sobic.008G137600 RNA recognition motif containing protein, expressed K12900: FUS-interacting serine-arginine-rich protein 1
18 Sobic.002G272600 TBC domain containing protein, expressed -
19 Sobic.009G226400 dynamin family protein, putative, expressed -
20 Sobic.003G125100 uncharacterized Cys-rich domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G257001 Sobic006G257001 Sobic001G067900 Sobic001G067900 Sobic006G257001--Sobic001G067900 Sobic006G034800 Sobic006G034800 Sobic006G257001--Sobic006G034800 Sobic001G105100 Sobic001G105100 Sobic006G257001--Sobic001G105100 Sobic001G237500 Sobic001G237500 Sobic006G257001--Sobic001G237500 Sobic001G041200 Sobic001G041200 Sobic006G257001--Sobic001G041200 Sobic002G131900 Sobic002G131900 Sobic006G257001--Sobic002G131900 Sobic010G105600 Sobic010G105600 Sobic006G257001--Sobic010G105600 Sobic003G217100 Sobic003G217100 Sobic006G257001--Sobic003G217100 Sobic002G301300 Sobic002G301300 Sobic006G257001--Sobic002G301300 Sobic001G067900--Sobic001G105100 Sobic004G072800 Sobic004G072800 Sobic001G067900--Sobic004G072800 Sobic001G067900--Sobic006G257001 Sobic002G281300 Sobic002G281300 Sobic001G067900--Sobic002G281300 Sobic001G067900--Sobic003G217100 Sobic001G067900--Sobic006G034800 Sobic006G250900 Sobic006G250900 Sobic001G067900--Sobic006G250900 Sobic010G205300 Sobic010G205300 Sobic001G067900--Sobic010G205300 Sobic001G067900--Sobic001G237500 Sobic006G034800--Sobic006G257001 Sobic006G034800--Sobic001G105100 Sobic006G034800--Sobic001G067900 Sobic003G400100 Sobic003G400100 Sobic006G034800--Sobic003G400100 Sobic006G034800--Sobic001G041200 Sobic006G034800--Sobic010G205300 Sobic006G034800--Sobic010G105600 Sobic001G206900 Sobic001G206900 Sobic006G034800--Sobic001G206900 Sobic006G034800--Sobic002G131900 Sobic001G105100--Sobic001G067900 Sobic001G105100--Sobic003G217100 Sobic008G132800 Sobic008G132800 Sobic001G105100--Sobic008G132800 Sobic001G105100--Sobic006G257001 Sobic001G105100--Sobic006G034800 Sobic001G105100--Sobic010G105600 Sobic001G105100--Sobic001G237500 Sobic006G222400 Sobic006G222400 Sobic001G105100--Sobic006G222400 Sobic008G137600 Sobic008G137600 Sobic001G105100--Sobic008G137600 Sobic001G237500--Sobic010G105600 Sobic001G237500--Sobic006G257001 Sobic001G237500--Sobic001G105100 Sobic001G237500--Sobic001G067900 Sobic001G237500--Sobic003G217100 Sobic004G222600 Sobic004G222600 Sobic001G237500--Sobic004G222600 Sobic001G237500--Sobic002G131900 Sobic003G052400 Sobic003G052400 Sobic001G237500--Sobic003G052400 Sobic004G132300 Sobic004G132300 Sobic001G237500--Sobic004G132300 Sobic006G242300 Sobic006G242300 Sobic001G041200--Sobic006G242300 Sobic003G119400 Sobic003G119400 Sobic001G041200--Sobic003G119400 Sobic001G041200--Sobic006G257001 Sobic001G041200--Sobic006G034800 Sobic001G041200--Sobic001G067900 Sobic002G259400 Sobic002G259400 Sobic001G041200--Sobic002G259400 Sobic001G041200--Sobic001G105100 Sobic006G056600 Sobic006G056600 Sobic001G041200--Sobic006G056600 Sobic009G033900 Sobic009G033900 Sobic001G041200--Sobic009G033900 Sobic002G131900--Sobic006G257001 Sobic002G131900--Sobic003G400100 Sobic004G274400 Sobic004G274400 Sobic002G131900--Sobic004G274400 Sobic002G131900--Sobic001G237500 Sobic002G131900--Sobic010G105600 Sobic002G131900--Sobic001G067900 Sobic002G131900--Sobic006G034800 Sobic002G131900--Sobic003G052400 Sobic002G131900--Sobic004G072800 Sobic010G105600--Sobic001G237500 Sobic010G105600--Sobic001G105100 Sobic003G405700 Sobic003G405700 Sobic010G105600--Sobic003G405700 Sobic010G105600--Sobic001G067900 Sobic010G105600--Sobic003G400100 Sobic010G105600--Sobic006G257001 Sobic002G272600 Sobic002G272600 Sobic010G105600--Sobic002G272600 Sobic001G061700 Sobic001G061700 Sobic010G105600--Sobic001G061700 Sobic010G105600--Sobic006G034800 Sobic003G217100--Sobic001G105100 Sobic002G090700 Sobic002G090700 Sobic003G217100--Sobic002G090700 Sobic003G217100--Sobic008G132800 Sobic003G217100--Sobic006G222400 Sobic001G309500 Sobic001G309500 Sobic003G217100--Sobic001G309500 Sobic003G217100--Sobic001G067900 Sobic005G184200 Sobic005G184200 Sobic003G217100--Sobic005G184200 Sobic003G217100--Sobic001G237500 Sobic001G408100 Sobic001G408100 Sobic003G217100--Sobic001G408100 Sobic002G301300--Sobic006G257001 Sobic002G301300--Sobic002G131900 Sobic004G253900 Sobic004G253900 Sobic002G301300--Sobic004G253900 Sobic002G301300--Sobic001G206900 Sobic010G188100 Sobic010G188100 Sobic002G301300--Sobic010G188100 Sobic002G301300--Sobic004G274400 Sobic001G283500 Sobic001G283500 Sobic002G301300--Sobic001G283500 Sobic010G026700 Sobic010G026700 Sobic002G301300--Sobic010G026700 Sobic002G301300--Sobic003G052400
Octagon: transcription factors


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