Gene annotation
Transcriptome id Sobic.003G400100.2,Sobic.003G400100.1
Synonym TBL17, YLS7, Sb03g043650
Functional annotation leaf senescence related protein, putative, expressed
UniProt H0I4B7 , A0A1B6Q7T8
Pfam PF14416 PF13839
Panther DB PTHR32285 PTHR32285:SF18
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G51640 : Plant protein of unknown function (DUF828)
RAP-DB (Rice) LOC_Os01g68630.1 : leaf senescence related protein, putative, expressed
MaizeGDB (Corn) Zm00025a039354
Brachypodium KQK11173 , KQK11172 , PNT73447
Barley HORVU3Hr1G093240.4 , HORVU3Hr1G093240.3 , HORVU3Hr1G093240.2 , HORVU3Hr1G093240.1
Wheat TraesCS3B02G456300 , TraesCS3D02G416300 , TraesCS3A02G420800
Populus -


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cDNA sequences
Sobic.003G400100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G034800 neighbor of COX4, putative, expressed -
2 Sobic.001G261456 - -
3 Sobic.002G131900 expressed protein -
4 Sobic.002G313500 protein kinase PKN/PRK1, effector, putative, expressed -
5 Sobic.010G105600 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
6 Sobic.001G067900 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
7 Sobic.009G226400 dynamin family protein, putative, expressed -
8 Sobic.001G371200 SAC3/GANP family protein, putative, expressed -
9 Sobic.010G017800 LMBR1 integral membrane protein, putative, expressed K14617: LMBR1 domain-containing protein 1
10 Sobic.010G002400 glutamine cyclotransferase precursor, putative, expressed -
11 Sobic.006G257001 - -
12 Sobic.002G361300 eukaryotic aspartyl protease domain containing protein, expressed -
13 Sobic.001G201500 - K12614: DDX6, RCK, ATP-dependent RNA helicase DDX6/DHH1
14 Sobic.009G229600 tRNA-binding arm, putative, expressed -
15 Sobic.003G270600 adaptor complexes medium subunit family domain containing protein, expressed K12393: AP-1 complex subunit mu
16 Sobic.003G219500 adaptin ear-binding coat-associated protein 2, putative, expressed -
17 Sobic.001G105100 neighbor of COX4, putative, expressed -
18 Sobic.007G120500 Sec1 family transport protein, putative, expressed K12479: vacuolar protein sorting-associated protein 45
19 Sobic.009G214900 expressed protein -
20 Sobic.004G039600 proteasome/cyclosome repeat containing protein, expressed K03028: PSMD2, 26S proteasome regulatory subunit N1


Gene co-expression network
sample Sobic003G400100 Sobic003G400100 Sobic006G034800 Sobic006G034800 Sobic003G400100--Sobic006G034800 Sobic001G261456 Sobic001G261456 Sobic003G400100--Sobic001G261456 Sobic002G131900 Sobic002G131900 Sobic003G400100--Sobic002G131900 Sobic002G313500 Sobic002G313500 Sobic003G400100--Sobic002G313500 Sobic010G105600 Sobic010G105600 Sobic003G400100--Sobic010G105600 Sobic001G067900 Sobic001G067900 Sobic003G400100--Sobic001G067900 Sobic009G226400 Sobic009G226400 Sobic003G400100--Sobic009G226400 Sobic001G371200 Sobic001G371200 Sobic003G400100--Sobic001G371200 Sobic010G017800 Sobic010G017800 Sobic003G400100--Sobic010G017800 Sobic006G257001 Sobic006G257001 Sobic006G034800--Sobic006G257001 Sobic001G105100 Sobic001G105100 Sobic006G034800--Sobic001G105100 Sobic006G034800--Sobic001G067900 Sobic006G034800--Sobic003G400100 Sobic001G041200 Sobic001G041200 Sobic006G034800--Sobic001G041200 Sobic010G205300 Sobic010G205300 Sobic006G034800--Sobic010G205300 Sobic006G034800--Sobic010G105600 Sobic001G206900 Sobic001G206900 Sobic006G034800--Sobic001G206900 Sobic006G034800--Sobic002G131900 Sobic004G039600 Sobic004G039600 Sobic001G261456--Sobic004G039600 Sobic001G094900 Sobic001G094900 Sobic001G261456--Sobic001G094900 Sobic008G092300 Sobic008G092300 Sobic001G261456--Sobic008G092300 Sobic001G124200 Sobic001G124200 Sobic001G261456--Sobic001G124200 Sobic009G219000 Sobic009G219000 Sobic001G261456--Sobic009G219000 Sobic001G261456--Sobic001G371200 Sobic001G261456--Sobic003G400100 Sobic001G281600 Sobic001G281600 Sobic001G261456--Sobic001G281600 Sobic001G143500 Sobic001G143500 Sobic001G261456--Sobic001G143500 Sobic002G131900--Sobic006G257001 Sobic002G131900--Sobic003G400100 Sobic004G274400 Sobic004G274400 Sobic002G131900--Sobic004G274400 Sobic001G237500 Sobic001G237500 Sobic002G131900--Sobic001G237500 Sobic002G131900--Sobic010G105600 Sobic002G131900--Sobic001G067900 Sobic002G131900--Sobic006G034800 Sobic003G052400 Sobic003G052400 Sobic002G131900--Sobic003G052400 Sobic004G072800 Sobic004G072800 Sobic002G131900--Sobic004G072800 Sobic002G313500--Sobic001G143500 Sobic002G313500--Sobic001G371200 Sobic004G350100 Sobic004G350100 Sobic002G313500--Sobic004G350100 Sobic002G378200 Sobic002G378200 Sobic002G313500--Sobic002G378200 Sobic004G283000 Sobic004G283000 Sobic002G313500--Sobic004G283000 Sobic008G139700 Sobic008G139700 Sobic002G313500--Sobic008G139700 Sobic004G007300 Sobic004G007300 Sobic002G313500--Sobic004G007300 Sobic001G466700 Sobic001G466700 Sobic002G313500--Sobic001G466700 Sobic002G313500--Sobic010G017800 Sobic010G105600--Sobic001G237500 Sobic010G105600--Sobic001G105100 Sobic003G405700 Sobic003G405700 Sobic010G105600--Sobic003G405700 Sobic010G105600--Sobic001G067900 Sobic010G105600--Sobic003G400100 Sobic010G105600--Sobic006G257001 Sobic002G272600 Sobic002G272600 Sobic010G105600--Sobic002G272600 Sobic001G061700 Sobic001G061700 Sobic010G105600--Sobic001G061700 Sobic010G105600--Sobic006G034800 Sobic001G067900--Sobic001G105100 Sobic001G067900--Sobic004G072800 Sobic001G067900--Sobic006G257001 Sobic002G281300 Sobic002G281300 Sobic001G067900--Sobic002G281300 Sobic003G217100 Sobic003G217100 Sobic001G067900--Sobic003G217100 Sobic001G067900--Sobic006G034800 Sobic006G250900 Sobic006G250900 Sobic001G067900--Sobic006G250900 Sobic001G067900--Sobic010G205300 Sobic001G067900--Sobic001G237500 Sobic001G023100 Sobic001G023100 Sobic009G226400--Sobic001G023100 Sobic003G270600 Sobic003G270600 Sobic009G226400--Sobic003G270600 SobicK004100 SobicK004100 Sobic009G226400--SobicK004100 Sobic001G369000 Sobic001G369000 Sobic009G226400--Sobic001G369000 Sobic002G029300 Sobic002G029300 Sobic009G226400--Sobic002G029300 Sobic001G335900 Sobic001G335900 Sobic009G226400--Sobic001G335900 Sobic006G056200 Sobic006G056200 Sobic009G226400--Sobic006G056200 Sobic009G226400--Sobic004G039600 Sobic001G420800 Sobic001G420800 Sobic009G226400--Sobic001G420800 Sobic007G118200 Sobic007G118200 Sobic001G371200--Sobic007G118200 Sobic001G371200--Sobic002G313500 Sobic001G371200--Sobic001G466700 Sobic006G252700 Sobic006G252700 Sobic001G371200--Sobic006G252700 Sobic006G278700 Sobic006G278700 Sobic001G371200--Sobic006G278700 Sobic001G371200--Sobic002G378200 Sobic007G200600 Sobic007G200600 Sobic001G371200--Sobic007G200600 Sobic003G081000 Sobic003G081000 Sobic001G371200--Sobic003G081000 Sobic001G371200--Sobic004G283000 Sobic010G017800--Sobic002G313500 Sobic001G518400 Sobic001G518400 Sobic010G017800--Sobic001G518400 Sobic010G017800--Sobic008G139700 Sobic010G017800--Sobic001G335900 Sobic009G229600 Sobic009G229600 Sobic010G017800--Sobic009G229600 Sobic004G325400 Sobic004G325400 Sobic010G017800--Sobic004G325400 Sobic005G216300 Sobic005G216300 Sobic010G017800--Sobic005G216300 Sobic010G017800--Sobic001G371200 Sobic003G340900 Sobic003G340900 Sobic010G017800--Sobic003G340900
Octagon: transcription factors


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