Gene annotation
Transcriptome id Sobic.003G219500.1
Synonym Sb03g027830
Functional annotation adaptin ear-binding coat-associated protein 2, putative, expressed
UniProt C5XR09
Pfam PF07933
Panther DB PTHR12847 PTHR12847:SF4
NCBI CDD KOG2500; Uncharacterized conserved protein
KEGG Orthology -
Gene Ontology GO:0016020; membrane GO:0006897endocytosis


Orthologs (automatic annotation)
TAIR AT3G58600 : Adaptin ear-binding coat-associated protein 1 NECAP-1
RAP-DB (Rice) LOC_Os01g42830.1 : adaptin ear-binding coat-associated protein 2, putative, expressed
MaizeGDB (Corn) Zm00025a028728
Brachypodium KQK08718
Barley HORVU3Hr1G054050.7 , HORVU3Hr1G054050.6 , HORVU3Hr1G054050.5 , HORVU3Hr1G054050.4 , HORVU3Hr1G054050.3 , HORVU3Hr1G054050.2 , HORVU3Hr1G054050.1
Wheat TraesCS3A02G220500 , TraesCS3D02G232100 , TraesCS3B02G250800
Populus PNS91236 , PNS91237 , PNS91235


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G376300 FYVE zinc finger family protein, expressed -
2 Sobic.003G400100 leaf senescence related protein, putative, expressed -
3 Sobic.001G127000 alkaline phytoceramidase, putative, expressed K04711: ACER3, dihydroceramidase
4 Sobic.009G238800 expressed protein -
5 Sobic.002G378200 adaptor complexes medium subunit family domain containing protein, expressed K12402: AP-4 complex subunit mu-1
6 Sobic.001G067900 clathrin adaptor complex small chain domain containing protein, expressed K12394: AP-1 complex subunit sigma 1/2
7 Sobic.003G187200 phox domain-containing protein, putative, expressed -
8 Sobic.003G051200 Complex I intermediate-associated protein 30 domain containing protein, putative, expressed K18159: NDUFAF1, NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 1
9 Sobic.006G034800 neighbor of COX4, putative, expressed -
10 Sobic.002G055100 expressed protein -
11 Sobic.010G105600 RNA recognition motif containing protein, putative, expressed K12881: THOC4, THO complex subunit 4
12 Sobic.006G148200 glycosyl transferase 8 domain containing protein, putative, expressed -
13 Sobic.004G025300 vesicle transport v-SNARE protein, putative, expressed K08495: GOSR1, golgi SNAP receptor complex member 1
14 Sobic.002G256200 cyclin, putative, expressed K15161: CCNC, cyclin-C
15 Sobic.001G237500 transporter family protein, putative, expressed -
16 Sobic.003G217100 Yip1 domain containing protein, expressed -
17 Sobic.003G052400 proline-rich family protein, putative, expressed -
18 Sobic.001G430800 GA17271-PA, putative, expressed -
19 Sobic.001G048700 TBC domain containing protein, expressed -
20 Sobic.002G361300 eukaryotic aspartyl protease domain containing protein, expressed -


Gene co-expression network
sample Sobic003G219500 Sobic003G219500 Sobic002G376300 Sobic002G376300 Sobic003G219500--Sobic002G376300 Sobic003G400100 Sobic003G400100 Sobic003G219500--Sobic003G400100 Sobic001G127000 Sobic001G127000 Sobic003G219500--Sobic001G127000 Sobic009G238800 Sobic009G238800 Sobic003G219500--Sobic009G238800 Sobic002G378200 Sobic002G378200 Sobic003G219500--Sobic002G378200 Sobic001G067900 Sobic001G067900 Sobic003G219500--Sobic001G067900 Sobic003G187200 Sobic003G187200 Sobic003G219500--Sobic003G187200 Sobic003G051200 Sobic003G051200 Sobic003G219500--Sobic003G051200 Sobic006G034800 Sobic006G034800 Sobic003G219500--Sobic006G034800 Sobic002G376300--Sobic009G238800 Sobic001G048700 Sobic001G048700 Sobic002G376300--Sobic001G048700 Sobic002G376300--Sobic003G219500 Sobic002G376300--Sobic002G378200 Sobic007G118000 Sobic007G118000 Sobic002G376300--Sobic007G118000 Sobic009G054700 Sobic009G054700 Sobic002G376300--Sobic009G054700 Sobic007G115900 Sobic007G115900 Sobic002G376300--Sobic007G115900 Sobic006G148200 Sobic006G148200 Sobic002G376300--Sobic006G148200 Sobic002G376300--Sobic001G067900 Sobic003G400100--Sobic006G034800 Sobic001G261456 Sobic001G261456 Sobic003G400100--Sobic001G261456 Sobic002G131900 Sobic002G131900 Sobic003G400100--Sobic002G131900 Sobic002G313500 Sobic002G313500 Sobic003G400100--Sobic002G313500 Sobic010G105600 Sobic010G105600 Sobic003G400100--Sobic010G105600 Sobic003G400100--Sobic001G067900 Sobic009G226400 Sobic009G226400 Sobic003G400100--Sobic009G226400 Sobic001G371200 Sobic001G371200 Sobic003G400100--Sobic001G371200 Sobic010G017800 Sobic010G017800 Sobic003G400100--Sobic010G017800 Sobic009G257200 Sobic009G257200 Sobic001G127000--Sobic009G257200 Sobic002G361300 Sobic002G361300 Sobic001G127000--Sobic002G361300 Sobic002G067600 Sobic002G067600 Sobic001G127000--Sobic002G067600 Sobic003G270600 Sobic003G270600 Sobic001G127000--Sobic003G270600 Sobic001G127000--Sobic003G187200 Sobic004G003501 Sobic004G003501 Sobic001G127000--Sobic004G003501 Sobic006G126100 Sobic006G126100 Sobic001G127000--Sobic006G126100 Sobic007G120500 Sobic007G120500 Sobic001G127000--Sobic007G120500 Sobic006G194500 Sobic006G194500 Sobic001G127000--Sobic006G194500 Sobic010G080200 Sobic010G080200 Sobic009G238800--Sobic010G080200 Sobic006G232000 Sobic006G232000 Sobic009G238800--Sobic006G232000 Sobic006G217700 Sobic006G217700 Sobic009G238800--Sobic006G217700 Sobic001G033500 Sobic001G033500 Sobic009G238800--Sobic001G033500 Sobic009G238800--Sobic002G376300 Sobic009G238800--Sobic006G148200 Sobic009G238800--Sobic001G048700 Sobic009G238800--Sobic001G067900 Sobic001G206900 Sobic001G206900 Sobic009G238800--Sobic001G206900 Sobic006G278700 Sobic006G278700 Sobic002G378200--Sobic006G278700 Sobic004G345700 Sobic004G345700 Sobic002G378200--Sobic004G345700 Sobic002G084300 Sobic002G084300 Sobic002G378200--Sobic002G084300 Sobic004G007300 Sobic004G007300 Sobic002G378200--Sobic004G007300 Sobic004G283000 Sobic004G283000 Sobic002G378200--Sobic004G283000 Sobic001G056200 Sobic001G056200 Sobic002G378200--Sobic001G056200 Sobic002G132300 Sobic002G132300 Sobic002G378200--Sobic002G132300 Sobic001G028400 Sobic001G028400 Sobic002G378200--Sobic001G028400 Sobic002G378200--Sobic003G187200 Sobic001G105100 Sobic001G105100 Sobic001G067900--Sobic001G105100 Sobic004G072800 Sobic004G072800 Sobic001G067900--Sobic004G072800 Sobic006G257001 Sobic006G257001 Sobic001G067900--Sobic006G257001 Sobic002G281300 Sobic002G281300 Sobic001G067900--Sobic002G281300 Sobic003G217100 Sobic003G217100 Sobic001G067900--Sobic003G217100 Sobic001G067900--Sobic006G034800 Sobic006G250900 Sobic006G250900 Sobic001G067900--Sobic006G250900 Sobic010G205300 Sobic010G205300 Sobic001G067900--Sobic010G205300 Sobic001G237500 Sobic001G237500 Sobic001G067900--Sobic001G237500 Sobic010G204400 Sobic010G204400 Sobic003G187200--Sobic010G204400 Sobic003G187200--Sobic004G345700 Sobic004G039600 Sobic004G039600 Sobic003G187200--Sobic004G039600 Sobic007G132100 Sobic007G132100 Sobic003G187200--Sobic007G132100 Sobic006G195700 Sobic006G195700 Sobic003G187200--Sobic006G195700 Sobic006G163800 Sobic006G163800 Sobic003G187200--Sobic006G163800 Sobic003G187200--Sobic002G378200 Sobic003G187500 Sobic003G187500 Sobic003G187200--Sobic003G187500 Sobic010G053800 Sobic010G053800 Sobic003G187200--Sobic010G053800 Sobic003G248500 Sobic003G248500 Sobic003G051200--Sobic003G248500 Sobic003G051200--Sobic004G283000 Sobic001G390500 Sobic001G390500 Sobic003G051200--Sobic001G390500 Sobic003G051200--Sobic002G378200 Sobic007G111100 Sobic007G111100 Sobic003G051200--Sobic007G111100 Sobic002G365100 Sobic002G365100 Sobic003G051200--Sobic002G365100 Sobic002G388200 Sobic002G388200 Sobic003G051200--Sobic002G388200 Sobic001G083600 Sobic001G083600 Sobic003G051200--Sobic001G083600 Sobic003G051200--Sobic001G371200 Sobic006G034800--Sobic006G257001 Sobic006G034800--Sobic001G105100 Sobic006G034800--Sobic001G067900 Sobic006G034800--Sobic003G400100 Sobic001G041200 Sobic001G041200 Sobic006G034800--Sobic001G041200 Sobic006G034800--Sobic010G205300 Sobic006G034800--Sobic010G105600 Sobic006G034800--Sobic001G206900 Sobic006G034800--Sobic002G131900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.