Gene annotation
Transcriptome id Sobic.002G301300.1
Synonym Sb02g033180, VPS24.1
Functional annotation SNF7 domain containing protein, putative, expressed
UniProt C5X8I7
Pfam PF03357
Panther DB PTHR10476 PTHR10476:SF16
NCBI CDD KOG3229; Vacuolar sorting protein VPS24
KEGG Orthology K12193; VPS24, charged multivesicular body protein 3
Gene Ontology GO:0007034; vacuolar transport


Orthologs (automatic annotation)
TAIR AT5G22950 : SNF7 family protein
RAP-DB (Rice) LOC_Os07g29630.1 : SNF7 domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a048018 , Zm00025a000154
Brachypodium KQK16283 , KQK16282 , KQK20569
Barley HORVU4Hr1G090800.3 , HORVU4Hr1G090800.2 , HORVU4Hr1G090800.1
Wheat TraesCS5D02G032400 , TraesCS4D02G358600 , TraesCS4B02G382900
Populus -


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cDNA sequences
Sobic.002G301300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G257001 - -
2 Sobic.002G131900 expressed protein -
3 Sobic.004G253900 BSD domain-containing protein, putative, expressed -
4 Sobic.001G206900 vacuolar protein-sorting protein bro1, putative, expressed K12200: PDCD6IP, ALIX, programmed cell death 6-interacting protein
5 Sobic.010G188100 SNF7 domain containing protein, putative, expressed K12194: CHMP4, SNF7, charged multivesicular body protein 4
6 Sobic.004G274400 GCN5-related N-acetyltransferase, putative, expressed -
7 Sobic.001G283500 VHS and GAT domain containing protein, expressed -
8 Sobic.010G026700 cornichon protein, putative, expressed -
9 Sobic.003G052400 proline-rich family protein, putative, expressed -
10 Sobic.009G219900 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
11 Sobic.006G281800 ras-related protein, putative, expressed K07910: Ras-related protein Rab-18
12 Sobic.003G104700 Rer1 protein, putative, expressed -
13 Sobic.003G023500 syntaxin, putative, expressed K08489: syntaxin 16
14 Sobic.002G348600 zinc finger family protein, putative, expressed -
15 Sobic.010G205300 secreted salivary protein, putative, expressed -
16 Sobic.001G358300 SNARE associated Golgi protein, putative, expressed -
17 Sobic.006G034800 neighbor of COX4, putative, expressed -
18 Sobic.001G214200 lysM domain containing protein, putative, expressed -
19 Sobic.006G207900 DNA binding protein, putative, expressed -
20 Sobic.010G062800 transporter, major facilitator family, putative, expressed K13783: MFS transporter, OPA family, solute carrier family 37 (glycerol-3-phosphate transporter), member 1/2


Gene co-expression network
sample Sobic002G301300 Sobic002G301300 Sobic006G257001 Sobic006G257001 Sobic002G301300--Sobic006G257001 Sobic002G131900 Sobic002G131900 Sobic002G301300--Sobic002G131900 Sobic004G253900 Sobic004G253900 Sobic002G301300--Sobic004G253900 Sobic001G206900 Sobic001G206900 Sobic002G301300--Sobic001G206900 Sobic010G188100 Sobic010G188100 Sobic002G301300--Sobic010G188100 Sobic004G274400 Sobic004G274400 Sobic002G301300--Sobic004G274400 Sobic001G283500 Sobic001G283500 Sobic002G301300--Sobic001G283500 Sobic010G026700 Sobic010G026700 Sobic002G301300--Sobic010G026700 Sobic003G052400 Sobic003G052400 Sobic002G301300--Sobic003G052400 Sobic001G067900 Sobic001G067900 Sobic006G257001--Sobic001G067900 Sobic006G034800 Sobic006G034800 Sobic006G257001--Sobic006G034800 Sobic001G105100 Sobic001G105100 Sobic006G257001--Sobic001G105100 Sobic001G237500 Sobic001G237500 Sobic006G257001--Sobic001G237500 Sobic001G041200 Sobic001G041200 Sobic006G257001--Sobic001G041200 Sobic006G257001--Sobic002G131900 Sobic010G105600 Sobic010G105600 Sobic006G257001--Sobic010G105600 Sobic003G217100 Sobic003G217100 Sobic006G257001--Sobic003G217100 Sobic006G257001--Sobic002G301300 Sobic002G131900--Sobic006G257001 Sobic003G400100 Sobic003G400100 Sobic002G131900--Sobic003G400100 Sobic002G131900--Sobic004G274400 Sobic002G131900--Sobic001G237500 Sobic002G131900--Sobic010G105600 Sobic002G131900--Sobic001G067900 Sobic002G131900--Sobic006G034800 Sobic002G131900--Sobic003G052400 Sobic004G072800 Sobic004G072800 Sobic002G131900--Sobic004G072800 Sobic007G132700 Sobic007G132700 Sobic004G253900--Sobic007G132700 Sobic009G174000 Sobic009G174000 Sobic004G253900--Sobic009G174000 Sobic003G299000 Sobic003G299000 Sobic004G253900--Sobic003G299000 Sobic004G253900--Sobic002G131900 Sobic004G253900--Sobic002G301300 Sobic003G077900 Sobic003G077900 Sobic004G253900--Sobic003G077900 Sobic009G219900 Sobic009G219900 Sobic004G253900--Sobic009G219900 Sobic007G013300 Sobic007G013300 Sobic004G253900--Sobic007G013300 Sobic010G118100 Sobic010G118100 Sobic004G253900--Sobic010G118100 Sobic001G323000 Sobic001G323000 Sobic001G206900--Sobic001G323000 Sobic003G312200 Sobic003G312200 Sobic001G206900--Sobic003G312200 Sobic004G010900 Sobic004G010900 Sobic001G206900--Sobic004G010900 Sobic004G181900 Sobic004G181900 Sobic001G206900--Sobic004G181900 Sobic001G085100 Sobic001G085100 Sobic001G206900--Sobic001G085100 Sobic009G149500 Sobic009G149500 Sobic001G206900--Sobic009G149500 Sobic006G148200 Sobic006G148200 Sobic001G206900--Sobic006G148200 Sobic007G167900 Sobic007G167900 Sobic001G206900--Sobic007G167900 Sobic003G349300 Sobic003G349300 Sobic001G206900--Sobic003G349300 Sobic001G220400 Sobic001G220400 Sobic010G188100--Sobic001G220400 Sobic010G188100--Sobic009G219900 Sobic010G101500 Sobic010G101500 Sobic010G188100--Sobic010G101500 Sobic003G367451 Sobic003G367451 Sobic010G188100--Sobic003G367451 Sobic010G188100--Sobic003G077900 Sobic009G001400 Sobic009G001400 Sobic010G188100--Sobic009G001400 Sobic002G400000 Sobic002G400000 Sobic010G188100--Sobic002G400000 Sobic002G166900 Sobic002G166900 Sobic010G188100--Sobic002G166900 Sobic010G188100--Sobic001G283500 Sobic004G274400--Sobic006G148200 Sobic004G274400--Sobic001G323000 Sobic006G225600 Sobic006G225600 Sobic004G274400--Sobic006G225600 Sobic003G002400 Sobic003G002400 Sobic004G274400--Sobic003G002400 Sobic009G219000 Sobic009G219000 Sobic004G274400--Sobic009G219000 Sobic004G274400--Sobic002G131900 Sobic004G274400--Sobic003G312200 Sobic004G274400--Sobic001G206900 Sobic003G007500 Sobic003G007500 Sobic004G274400--Sobic003G007500 Sobic008G016900 Sobic008G016900 Sobic001G283500--Sobic008G016900 Sobic007G195701 Sobic007G195701 Sobic001G283500--Sobic007G195701 Sobic001G403700 Sobic001G403700 Sobic001G283500--Sobic001G403700 Sobic003G115800 Sobic003G115800 Sobic001G283500--Sobic003G115800 Sobic009G160200 Sobic009G160200 Sobic001G283500--Sobic009G160200 Sobic010G204300 Sobic010G204300 Sobic001G283500--Sobic010G204300 Sobic002G296300 Sobic002G296300 Sobic001G283500--Sobic002G296300 Sobic010G062800 Sobic010G062800 Sobic001G283500--Sobic010G062800 Sobic001G283500--Sobic010G188100 Sobic003G104700 Sobic003G104700 Sobic010G026700--Sobic003G104700 Sobic001G214200 Sobic001G214200 Sobic010G026700--Sobic001G214200 Sobic002G261900 Sobic002G261900 Sobic010G026700--Sobic002G261900 Sobic009G135600 Sobic009G135600 Sobic010G026700--Sobic009G135600 Sobic001G311100 Sobic001G311100 Sobic010G026700--Sobic001G311100 Sobic003G023000 Sobic003G023000 Sobic010G026700--Sobic003G023000 Sobic003G141700 Sobic003G141700 Sobic010G026700--Sobic003G141700 Sobic007G139700 Sobic007G139700 Sobic010G026700--Sobic007G139700 Sobic010G026700--Sobic003G349300 Sobic010G017000 Sobic010G017000 Sobic003G052400--Sobic010G017000 Sobic001G408100 Sobic001G408100 Sobic003G052400--Sobic001G408100 Sobic002G348600 Sobic002G348600 Sobic003G052400--Sobic002G348600 Sobic003G052400--Sobic001G067900 Sobic008G003600 Sobic008G003600 Sobic003G052400--Sobic008G003600 Sobic003G052400--Sobic003G217100 Sobic003G052400--Sobic009G160200 Sobic003G052400--Sobic006G257001 Sobic003G052400--Sobic001G237500
Octagon: transcription factors


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