Gene annotation
Transcriptome id Sobic.004G253900.1
Synonym Sb04g029290
Functional annotation BSD domain-containing protein, putative, expressed
UniProt C5XZQ1
Pfam PF03909
Panther DB PTHR31923 PTHR31923:SF1
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G26300 : BSD domain-containing protein
RAP-DB (Rice) LOC_Os02g49450.1 : BSD domain-containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a021885 , Zm00025a032603
Brachypodium KQK01517 , PNT69484
Barley HORVU6Hr1G072230.2 , HORVU6Hr1G072230.3 , HORVU6Hr1G072230.1
Wheat TraesCS6A02G287800 , TraesCS6A02G287800 , TraesCS6B02G317200 , TraesCS6D02G268500 , TraesCS6D02G268500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.004G253900


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G132700 tran- scriptional repressor JASMONATE ZIM-DOMAIN(PubMedID : 25711704)@ZIM motif family protein, expressed K13464: jasmonate ZIM domain-containing protein
2 Sobic.009G174000 expressed protein -
3 Sobic.003G299000 protein of unknown function DUF1421 domain containing protein, expressed -
4 Sobic.002G131900 expressed protein -
5 Sobic.002G301300 SNF7 domain containing protein, putative, expressed K12193: VPS24, charged multivesicular body protein 3
6 Sobic.003G077900 vacuolar protein sorting-associating protein 4B, putative, expressed K12196: vacuolar protein-sorting-associated protein 4
7 Sobic.009G219900 peptidyl-tRNA hydrolase, mitochondrial precursor protein, putative, expressed K01056: PTH1, pth, peptidyl-tRNA hydrolase, PTH1 family
8 Sobic.007G013300 protein kinase family protein, putative, expressed -
9 Sobic.010G118100 protein kinase, putative, expressed -
10 Sobic.006G261300 adenylate kinase, putative, expressed K00939: adk, adenylate kinase
11 Sobic.002G431600 protein kinase APK1B, chloroplast precursor, putative, expressed -
12 Sobic.002G058700 RNA recognition motif containing protein, expressed K12885: RBMX, heterogeneous nuclear ribonucleoprotein G
13 Sobic.010G009400 G-protein alpha subunit, putative, expressed -
14 Sobic.002G288900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@expressed protein -
15 Sobic.003G436300 expressed protein -
16 Sobic.004G174100 expressed protein -
17 Sobic.007G203300 CDK-activating kinase assembly factor MAT1 family protein, expressed K10842: CDK-activating kinase assembly factor MAT1
18 Sobic.009G104000 ranBP1 domain containing protein, expressed K15306: Ran-binding protein 1
19 Sobic.004G348900 expressed protein -
20 Sobic.006G034000 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase


Gene co-expression network
sample Sobic004G253900 Sobic004G253900 Sobic007G132700 Sobic007G132700 Sobic004G253900--Sobic007G132700 Sobic009G174000 Sobic009G174000 Sobic004G253900--Sobic009G174000 Sobic003G299000 Sobic003G299000 Sobic004G253900--Sobic003G299000 Sobic002G131900 Sobic002G131900 Sobic004G253900--Sobic002G131900 Sobic002G301300 Sobic002G301300 Sobic004G253900--Sobic002G301300 Sobic003G077900 Sobic003G077900 Sobic004G253900--Sobic003G077900 Sobic009G219900 Sobic009G219900 Sobic004G253900--Sobic009G219900 Sobic007G013300 Sobic007G013300 Sobic004G253900--Sobic007G013300 Sobic010G118100 Sobic010G118100 Sobic004G253900--Sobic010G118100 Sobic009G179200 Sobic009G179200 Sobic007G132700--Sobic009G179200 Sobic009G104000 Sobic009G104000 Sobic007G132700--Sobic009G104000 Sobic001G162100 Sobic001G162100 Sobic007G132700--Sobic001G162100 Sobic010G062800 Sobic010G062800 Sobic007G132700--Sobic010G062800 Sobic010G188100 Sobic010G188100 Sobic007G132700--Sobic010G188100 Sobic007G132700--Sobic004G253900 Sobic008G016900 Sobic008G016900 Sobic007G132700--Sobic008G016900 Sobic001G012800 Sobic001G012800 Sobic007G132700--Sobic001G012800 Sobic007G132700--Sobic009G219900 Sobic001G431000 Sobic001G431000 Sobic009G174000--Sobic001G431000 Sobic005G155800 Sobic005G155800 Sobic009G174000--Sobic005G155800 Sobic001G413200 Sobic001G413200 Sobic009G174000--Sobic001G413200 Sobic007G203300 Sobic007G203300 Sobic009G174000--Sobic007G203300 Sobic003G102600 Sobic003G102600 Sobic009G174000--Sobic003G102600 Sobic010G230600 Sobic010G230600 Sobic009G174000--Sobic010G230600 Sobic009G174000--Sobic004G253900 Sobic006G087400 Sobic006G087400 Sobic009G174000--Sobic006G087400 Sobic004G227300 Sobic004G227300 Sobic009G174000--Sobic004G227300 Sobic003G299000--Sobic003G077900 Sobic004G348900 Sobic004G348900 Sobic003G299000--Sobic004G348900 Sobic001G206900 Sobic001G206900 Sobic003G299000--Sobic001G206900 Sobic003G436300 Sobic003G436300 Sobic003G299000--Sobic003G436300 Sobic003G299000--Sobic004G227300 Sobic001G417900 Sobic001G417900 Sobic003G299000--Sobic001G417900 Sobic002G418700 Sobic002G418700 Sobic003G299000--Sobic002G418700 Sobic003G217400 Sobic003G217400 Sobic003G299000--Sobic003G217400 Sobic002G242200 Sobic002G242200 Sobic003G299000--Sobic002G242200 Sobic006G257001 Sobic006G257001 Sobic002G131900--Sobic006G257001 Sobic003G400100 Sobic003G400100 Sobic002G131900--Sobic003G400100 Sobic004G274400 Sobic004G274400 Sobic002G131900--Sobic004G274400 Sobic001G237500 Sobic001G237500 Sobic002G131900--Sobic001G237500 Sobic010G105600 Sobic010G105600 Sobic002G131900--Sobic010G105600 Sobic001G067900 Sobic001G067900 Sobic002G131900--Sobic001G067900 Sobic006G034800 Sobic006G034800 Sobic002G131900--Sobic006G034800 Sobic003G052400 Sobic003G052400 Sobic002G131900--Sobic003G052400 Sobic004G072800 Sobic004G072800 Sobic002G131900--Sobic004G072800 Sobic002G301300--Sobic006G257001 Sobic002G301300--Sobic002G131900 Sobic002G301300--Sobic004G253900 Sobic002G301300--Sobic001G206900 Sobic002G301300--Sobic010G188100 Sobic002G301300--Sobic004G274400 Sobic001G283500 Sobic001G283500 Sobic002G301300--Sobic001G283500 Sobic010G026700 Sobic010G026700 Sobic002G301300--Sobic010G026700 Sobic002G301300--Sobic003G052400 Sobic002G400000 Sobic002G400000 Sobic003G077900--Sobic002G400000 Sobic007G168600 Sobic007G168600 Sobic003G077900--Sobic007G168600 Sobic003G077900--Sobic003G217400 Sobic003G077900--Sobic010G188100 Sobic004G060600 Sobic004G060600 Sobic003G077900--Sobic004G060600 Sobic001G220400 Sobic001G220400 Sobic003G077900--Sobic001G220400 Sobic003G077900--Sobic004G348900 Sobic003G077900--Sobic009G219900 Sobic004G130900 Sobic004G130900 Sobic003G077900--Sobic004G130900 Sobic009G219900--Sobic010G188100 Sobic009G219900--Sobic001G220400 Sobic009G219900--Sobic003G077900 Sobic001G541100 Sobic001G541100 Sobic009G219900--Sobic001G541100 Sobic001G328200 Sobic001G328200 Sobic009G219900--Sobic001G328200 Sobic006G225600 Sobic006G225600 Sobic009G219900--Sobic006G225600 Sobic010G101500 Sobic010G101500 Sobic009G219900--Sobic010G101500 Sobic001G414500 Sobic001G414500 Sobic009G219900--Sobic001G414500 Sobic002G431600 Sobic002G431600 Sobic009G219900--Sobic002G431600 Sobic005G074100 Sobic005G074100 Sobic007G013300--Sobic005G074100 Sobic007G013300--Sobic001G206900 Sobic001G145500 Sobic001G145500 Sobic007G013300--Sobic001G145500 Sobic002G058700 Sobic002G058700 Sobic007G013300--Sobic002G058700 Sobic007G013300--Sobic003G299000 Sobic004G010900 Sobic004G010900 Sobic007G013300--Sobic004G010900 Sobic009G149500 Sobic009G149500 Sobic007G013300--Sobic009G149500 Sobic004G082900 Sobic004G082900 Sobic007G013300--Sobic004G082900 Sobic002G342500 Sobic002G342500 Sobic007G013300--Sobic002G342500 Sobic010G118100--Sobic004G253900 Sobic005G175300 Sobic005G175300 Sobic010G118100--Sobic005G175300 Sobic006G261300 Sobic006G261300 Sobic010G118100--Sobic006G261300 Sobic010G009400 Sobic010G009400 Sobic010G118100--Sobic010G009400 Sobic004G283400 Sobic004G283400 Sobic010G118100--Sobic004G283400 Sobic009G190800 Sobic009G190800 Sobic010G118100--Sobic009G190800 Sobic010G118100--Sobic002G431600 Sobic010G185600 Sobic010G185600 Sobic010G118100--Sobic010G185600 Sobic003G359900 Sobic003G359900 Sobic010G118100--Sobic003G359900
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.