Gene annotation
Transcriptome id Sobic.008G111700.1
Synonym Sb08g016570
Functional annotation expressed protein
UniProt C5YP68
Pfam PF00536
Panther DB PTHR24176
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT3G07760 : Sterile alpha motif (SAM) domain-containing protein
RAP-DB (Rice) LOC_Os12g32992.1 : expressed protein
MaizeGDB (Corn) Zm00025a025571 , Zm00025a040619
Brachypodium KQJ86563
Barley -
Wheat TraesCS5D02G113600 , TraesCS5A02G102000
Populus -


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cDNA sequences
Sobic.008G111700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G285300 expressed protein -
2 Sobic.003G038600 phosducin-like protein 3, putative, expressed -
3 Sobic.001G448200 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
4 Sobic.001G349400 heat shock protein DnaJ, putative, expressed -
5 Sobic.003G247900 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D
6 Sobic.003G031200 translation initiation factor SUI1, putative, expressed -
7 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
8 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
9 Sobic.006G261100 UBX domain-containing protein, putative, expressed -
10 Sobic.003G125100 uncharacterized Cys-rich domain containing protein, putative, expressed -
11 Sobic.010G219100 protein kinase APK1B, chloroplast precursor, putative, expressed -
12 Sobic.003G118400 expressed protein -
13 Sobic.002G267400 POLD4A - Putative DNA polymerase delta complex subunit, expressed K03505: DNA polymerase delta subunit 4
14 Sobic.001G532100 proteasome subunit, putative, expressed K12175: GPS1, COPS1, COP9 signalosome complex subunit 1
15 Sobic.002G272600 TBC domain containing protein, expressed -
16 Sobic.003G062400 PHD finger protein, putative, expressed -
17 Sobic.001G036700 OsFBX442 - F-box domain containing protein, expressed -
18 Sobic.001G370300 WD domain, G-beta repeat domain containing protein, expressed K12662: PRPF4, U4/U6 small nuclear ribonucleoprotein PRP4
19 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
20 Sobic.006G110300 SAM domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic008G111700 Sobic008G111700 Sobic001G285300 Sobic001G285300 Sobic008G111700--Sobic001G285300 Sobic003G038600 Sobic003G038600 Sobic008G111700--Sobic003G038600 Sobic001G448200 Sobic001G448200 Sobic008G111700--Sobic001G448200 Sobic001G349400 Sobic001G349400 Sobic008G111700--Sobic001G349400 Sobic003G247900 Sobic003G247900 Sobic008G111700--Sobic003G247900 Sobic003G031200 Sobic003G031200 Sobic008G111700--Sobic003G031200 Sobic003G043400 Sobic003G043400 Sobic008G111700--Sobic003G043400 Sobic006G094600 Sobic006G094600 Sobic008G111700--Sobic006G094600 Sobic006G261100 Sobic006G261100 Sobic008G111700--Sobic006G261100 Sobic001G285300--Sobic008G111700 Sobic001G532100 Sobic001G532100 Sobic001G285300--Sobic001G532100 Sobic006G143500 Sobic006G143500 Sobic001G285300--Sobic006G143500 Sobic002G044000 Sobic002G044000 Sobic001G285300--Sobic002G044000 Sobic001G036700 Sobic001G036700 Sobic001G285300--Sobic001G036700 Sobic001G126200 Sobic001G126200 Sobic001G285300--Sobic001G126200 Sobic003G420700 Sobic003G420700 Sobic001G285300--Sobic003G420700 Sobic001G402300 Sobic001G402300 Sobic001G285300--Sobic001G402300 Sobic001G285300--Sobic006G094600 Sobic003G038600--Sobic008G111700 Sobic007G111100 Sobic007G111100 Sobic003G038600--Sobic007G111100 Sobic010G017000 Sobic010G017000 Sobic003G038600--Sobic010G017000 Sobic002G272600 Sobic002G272600 Sobic003G038600--Sobic002G272600 Sobic006G002500 Sobic006G002500 Sobic003G038600--Sobic006G002500 Sobic009G258400 Sobic009G258400 Sobic003G038600--Sobic009G258400 Sobic003G038600--Sobic003G247900 Sobic003G005200 Sobic003G005200 Sobic003G038600--Sobic003G005200 Sobic010G235200 Sobic010G235200 Sobic003G038600--Sobic010G235200 Sobic001G448200--Sobic001G285300 Sobic001G448200--Sobic008G111700 Sobic003G118400 Sobic003G118400 Sobic001G448200--Sobic003G118400 Sobic001G448200--Sobic006G094600 Sobic001G448200--Sobic003G247900 Sobic001G448200--Sobic003G038600 Sobic004G031800 Sobic004G031800 Sobic001G448200--Sobic004G031800 Sobic010G219100 Sobic010G219100 Sobic001G448200--Sobic010G219100 Sobic009G201800 Sobic009G201800 Sobic001G448200--Sobic009G201800 Sobic001G349400--Sobic008G111700 Sobic001G349400--Sobic001G285300 Sobic003G434000 Sobic003G434000 Sobic001G349400--Sobic003G434000 Sobic002G051200 Sobic002G051200 Sobic001G349400--Sobic002G051200 Sobic003G024800 Sobic003G024800 Sobic001G349400--Sobic003G024800 Sobic001G349400--Sobic006G143500 Sobic009G036900 Sobic009G036900 Sobic001G349400--Sobic009G036900 Sobic001G127400 Sobic001G127400 Sobic001G349400--Sobic001G127400 Sobic001G349400--Sobic003G420700 Sobic003G247900--Sobic003G038600 Sobic003G247900--Sobic010G219100 Sobic001G507400 Sobic001G507400 Sobic003G247900--Sobic001G507400 Sobic003G247900--Sobic008G111700 Sobic003G247900--Sobic001G285300 Sobic003G247900--Sobic001G532100 Sobic003G247900--Sobic002G272600 Sobic003G247900--Sobic006G094600 Sobic002G077900 Sobic002G077900 Sobic003G247900--Sobic002G077900 Sobic010G088300 Sobic010G088300 Sobic003G031200--Sobic010G088300 Sobic004G242100 Sobic004G242100 Sobic003G031200--Sobic004G242100 Sobic002G359900 Sobic002G359900 Sobic003G031200--Sobic002G359900 Sobic003G031200--Sobic008G111700 Sobic002G129200 Sobic002G129200 Sobic003G031200--Sobic002G129200 Sobic003G031200--Sobic002G044000 Sobic003G031200--Sobic003G043400 Sobic001G402600 Sobic001G402600 Sobic003G031200--Sobic001G402600 Sobic003G031200--Sobic001G285300 Sobic002G423800 Sobic002G423800 Sobic003G043400--Sobic002G423800 Sobic001G010700 Sobic001G010700 Sobic003G043400--Sobic001G010700 Sobic002G428200 Sobic002G428200 Sobic003G043400--Sobic002G428200 Sobic008G137600 Sobic008G137600 Sobic003G043400--Sobic008G137600 Sobic002G261900 Sobic002G261900 Sobic003G043400--Sobic002G261900 Sobic003G043400--Sobic001G532100 Sobic004G335000 Sobic004G335000 Sobic003G043400--Sobic004G335000 Sobic007G152400 Sobic007G152400 Sobic003G043400--Sobic007G152400 Sobic006G222400 Sobic006G222400 Sobic003G043400--Sobic006G222400 Sobic006G094600--Sobic008G137600 Sobic006G011000 Sobic006G011000 Sobic006G094600--Sobic006G011000 Sobic003G131300 Sobic003G131300 Sobic006G094600--Sobic003G131300 Sobic001G294900 Sobic001G294900 Sobic006G094600--Sobic001G294900 Sobic006G094600--Sobic001G126200 Sobic006G183000 Sobic006G183000 Sobic006G094600--Sobic006G183000 Sobic006G094600--Sobic001G285300 Sobic006G094600--Sobic002G428200 Sobic010G205300 Sobic010G205300 Sobic006G094600--Sobic010G205300 Sobic001G038100 Sobic001G038100 Sobic006G261100--Sobic001G038100 Sobic010G095700 Sobic010G095700 Sobic006G261100--Sobic010G095700 Sobic002G276900 Sobic002G276900 Sobic006G261100--Sobic002G276900 Sobic007G117100 Sobic007G117100 Sobic006G261100--Sobic007G117100 Sobic009G022100 Sobic009G022100 Sobic006G261100--Sobic009G022100 Sobic006G120800 Sobic006G120800 Sobic006G261100--Sobic006G120800 Sobic001G390500 Sobic001G390500 Sobic006G261100--Sobic001G390500 Sobic009G216000 Sobic009G216000 Sobic006G261100--Sobic009G216000 Sobic003G354100 Sobic003G354100 Sobic006G261100--Sobic003G354100
Octagon: transcription factors


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