Gene annotation
Transcriptome id Sobic.001G448200.1
Synonym UCH2, Sb01g042110
Functional annotation ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
UniProt C5WRS1
Pfam PF01088
Panther DB PTHR10589 PTHR10589:SF30
NCBI CDD KOG2778; Ubiquitin C-terminal hydrolase
KEGG Orthology K05610; UCHL5, ubiquitin carboxyl-terminal hydrolase L5
Gene Ontology GO:0006511; ubiquitin-dependent protein catabolic process GO:0005622intracellular GO:0004843thiol-dependent ubiquitin-specific protease activity


Orthologs (automatic annotation)
TAIR AT1G65650 : Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1
RAP-DB (Rice) LOC_Os02g08370.1 : ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed
MaizeGDB (Corn) Zm00025a030523 , Zm00025a005558
Brachypodium KQJ93652
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.001G448200


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G285300 expressed protein -
2 Sobic.008G111700 expressed protein -
3 Sobic.003G118400 expressed protein -
4 Sobic.006G094600 LSM domain containing protein, expressed K12620: U6 snRNA-associated Sm-like protein LSm1
5 Sobic.003G247900 eukaryotic translation initiation factor 3 subunit D, putative, expressed K03251: translation initiation factor 3 subunit D
6 Sobic.003G038600 phosducin-like protein 3, putative, expressed -
7 Sobic.004G031800 expressed protein -
8 Sobic.010G219100 protein kinase APK1B, chloroplast precursor, putative, expressed -
9 Sobic.009G201800 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
10 Sobic.006G222400 RNA recognition motif containing protein, putative, expressed -
11 Sobic.004G175700 tetratricopeptide repeat domain containing protein, expressed -
12 Sobic.001G126200 acetyltransferase, GNAT family, putative, expressed K17972: NAA20, N-terminal acetyltransferase B complex catalytic subunit
13 Sobic.003G125100 uncharacterized Cys-rich domain containing protein, putative, expressed -
14 Sobic.009G224600 SNARE domain containing protein, putative, expressed K08506: syntaxin of plants SYP7
15 Sobic.001G349400 heat shock protein DnaJ, putative, expressed -
16 Sobic.002G044000 WD domain, G-beta repeat domain containing protein, expressed K03246: translation initiation factor 3 subunit I
17 Sobic.001G119700 transcription regulator, putative, expressed -
18 Sobic.003G023500 syntaxin, putative, expressed K08489: syntaxin 16
19 Sobic.003G410400 zinc finger, C3HC4 type domain containing protein, expressed -
20 Sobic.001G036700 OsFBX442 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic001G448200 Sobic001G448200 Sobic001G285300 Sobic001G285300 Sobic001G448200--Sobic001G285300 Sobic008G111700 Sobic008G111700 Sobic001G448200--Sobic008G111700 Sobic003G118400 Sobic003G118400 Sobic001G448200--Sobic003G118400 Sobic006G094600 Sobic006G094600 Sobic001G448200--Sobic006G094600 Sobic003G247900 Sobic003G247900 Sobic001G448200--Sobic003G247900 Sobic003G038600 Sobic003G038600 Sobic001G448200--Sobic003G038600 Sobic004G031800 Sobic004G031800 Sobic001G448200--Sobic004G031800 Sobic010G219100 Sobic010G219100 Sobic001G448200--Sobic010G219100 Sobic009G201800 Sobic009G201800 Sobic001G448200--Sobic009G201800 Sobic001G285300--Sobic008G111700 Sobic001G532100 Sobic001G532100 Sobic001G285300--Sobic001G532100 Sobic006G143500 Sobic006G143500 Sobic001G285300--Sobic006G143500 Sobic002G044000 Sobic002G044000 Sobic001G285300--Sobic002G044000 Sobic001G036700 Sobic001G036700 Sobic001G285300--Sobic001G036700 Sobic001G126200 Sobic001G126200 Sobic001G285300--Sobic001G126200 Sobic003G420700 Sobic003G420700 Sobic001G285300--Sobic003G420700 Sobic001G402300 Sobic001G402300 Sobic001G285300--Sobic001G402300 Sobic001G285300--Sobic006G094600 Sobic008G111700--Sobic001G285300 Sobic008G111700--Sobic003G038600 Sobic008G111700--Sobic001G448200 Sobic001G349400 Sobic001G349400 Sobic008G111700--Sobic001G349400 Sobic008G111700--Sobic003G247900 Sobic003G031200 Sobic003G031200 Sobic008G111700--Sobic003G031200 Sobic003G043400 Sobic003G043400 Sobic008G111700--Sobic003G043400 Sobic008G111700--Sobic006G094600 Sobic006G261100 Sobic006G261100 Sobic008G111700--Sobic006G261100 Sobic002G254500 Sobic002G254500 Sobic003G118400--Sobic002G254500 Sobic001G382200 Sobic001G382200 Sobic003G118400--Sobic001G382200 Sobic001G530800 Sobic001G530800 Sobic003G118400--Sobic001G530800 Sobic004G249300 Sobic004G249300 Sobic003G118400--Sobic004G249300 Sobic002G116500 Sobic002G116500 Sobic003G118400--Sobic002G116500 Sobic003G125100 Sobic003G125100 Sobic003G118400--Sobic003G125100 Sobic009G169200 Sobic009G169200 Sobic003G118400--Sobic009G169200 Sobic003G118400--Sobic006G094600 Sobic003G222700 Sobic003G222700 Sobic003G118400--Sobic003G222700 Sobic008G137600 Sobic008G137600 Sobic006G094600--Sobic008G137600 Sobic006G011000 Sobic006G011000 Sobic006G094600--Sobic006G011000 Sobic003G131300 Sobic003G131300 Sobic006G094600--Sobic003G131300 Sobic001G294900 Sobic001G294900 Sobic006G094600--Sobic001G294900 Sobic006G094600--Sobic001G126200 Sobic006G183000 Sobic006G183000 Sobic006G094600--Sobic006G183000 Sobic006G094600--Sobic001G285300 Sobic002G428200 Sobic002G428200 Sobic006G094600--Sobic002G428200 Sobic010G205300 Sobic010G205300 Sobic006G094600--Sobic010G205300 Sobic003G247900--Sobic003G038600 Sobic003G247900--Sobic010G219100 Sobic001G507400 Sobic001G507400 Sobic003G247900--Sobic001G507400 Sobic003G247900--Sobic008G111700 Sobic003G247900--Sobic001G285300 Sobic003G247900--Sobic001G532100 Sobic002G272600 Sobic002G272600 Sobic003G247900--Sobic002G272600 Sobic003G247900--Sobic006G094600 Sobic002G077900 Sobic002G077900 Sobic003G247900--Sobic002G077900 Sobic003G038600--Sobic008G111700 Sobic007G111100 Sobic007G111100 Sobic003G038600--Sobic007G111100 Sobic010G017000 Sobic010G017000 Sobic003G038600--Sobic010G017000 Sobic003G038600--Sobic002G272600 Sobic006G002500 Sobic006G002500 Sobic003G038600--Sobic006G002500 Sobic009G258400 Sobic009G258400 Sobic003G038600--Sobic009G258400 Sobic003G038600--Sobic003G247900 Sobic003G005200 Sobic003G005200 Sobic003G038600--Sobic003G005200 Sobic010G235200 Sobic010G235200 Sobic003G038600--Sobic010G235200 Sobic002G029300 Sobic002G029300 Sobic004G031800--Sobic002G029300 Sobic001G035400 Sobic001G035400 Sobic004G031800--Sobic001G035400 Sobic001G116000 Sobic001G116000 Sobic004G031800--Sobic001G116000 Sobic010G105600 Sobic010G105600 Sobic004G031800--Sobic010G105600 Sobic009G207200 Sobic009G207200 Sobic004G031800--Sobic009G207200 Sobic001G013200 Sobic001G013200 Sobic004G031800--Sobic001G013200 Sobic001G010700 Sobic001G010700 Sobic004G031800--Sobic001G010700 Sobic001G196100 Sobic001G196100 Sobic004G031800--Sobic001G196100 Sobic006G222400 Sobic006G222400 Sobic004G031800--Sobic006G222400 Sobic010G219100--Sobic002G272600 Sobic010G219100--Sobic003G247900 Sobic010G219100--Sobic008G137600 Sobic002G129000 Sobic002G129000 Sobic010G219100--Sobic002G129000 Sobic010G219100--Sobic006G183000 Sobic006G257001 Sobic006G257001 Sobic010G219100--Sobic006G257001 Sobic010G193800 Sobic010G193800 Sobic010G219100--Sobic010G193800 Sobic001G152000 Sobic001G152000 Sobic010G219100--Sobic001G152000 Sobic009G050700 Sobic009G050700 Sobic010G219100--Sobic009G050700 Sobic009G201800--Sobic002G044000 Sobic004G010700 Sobic004G010700 Sobic009G201800--Sobic004G010700 Sobic009G201800--Sobic004G249300 Sobic009G201800--Sobic001G382200 Sobic009G258500 Sobic009G258500 Sobic009G201800--Sobic009G258500 Sobic009G212300 Sobic009G212300 Sobic009G201800--Sobic009G212300 Sobic009G201800--Sobic001G285300 Sobic009G234400 Sobic009G234400 Sobic009G201800--Sobic009G234400 Sobic003G028100 Sobic003G028100 Sobic009G201800--Sobic003G028100
Octagon: transcription factors


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