Gene annotation
Transcriptome id Sobic.003G410400.2,Sobic.003G410400.1
Synonym Sb03g044490
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5XGY8
Pfam PF12678
Panther DB PTHR22763 PTHR22763:SF34
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding


Orthologs (automatic annotation)
TAIR AT5G15790 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os01g70160.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a005643 , Zm00025a026209
Brachypodium KQK11303 , KQK11304 , KQK11305 , PNT73512
Barley -
Wheat -
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.003G410400


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G058700 metal cation transporter, putative, expressed -
2 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
3 Sobic.003G312400 dymeclin, putative, expressed -
4 Sobic.009G201800 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
5 Sobic.003G252900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
6 Sobic.003G319000 universal stress protein domain containing protein, putative, expressed -
7 Sobic.003G039200 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
8 Sobic.003G031200 translation initiation factor SUI1, putative, expressed -
9 Sobic.004G010700 expressed protein -
10 Sobic.010G088300 serine/threonine-protein phosphatase 2A activator 2, putative, expressed K17605: PPP2R4, serine/threonine-protein phosphatase 2A activator
11 Sobic.002G277200 rRNA-processing protein FCF, putative, expressed K14773: U3 small nucleolar RNA-associated protein 23
12 Sobic.003G092700 xylosyltransferase, putative, expressed -
13 Sobic.003G224300 ribosomal protein L6, putative, expressed K02933: RP-L6, MRPL6, large subunit ribosomal protein L6
14 Sobic.007G216500 expressed protein -
15 Sobic.001G448200 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed K05610: UCHL5, ubiquitin carboxyl-terminal hydrolase L5
16 Sobic.009G182200 domain of unknown function, DUF250 domain containing protein, expressed -
17 Sobic.002G297600 DHHC zinc finger domain containing protein, expressed K18932: palmitoyltransferase
18 Sobic.003G348200 Lung seven transmembrane receptor domain containing protein, putative, expressed -
19 Sobic.001G285300 expressed protein -
20 Sobic.004G083000 CRAL/TRIO domain containing protein, expressed -


Gene co-expression network
sample Sobic003G410400 Sobic003G410400 Sobic008G058700 Sobic008G058700 Sobic003G410400--Sobic008G058700 Sobic003G043400 Sobic003G043400 Sobic003G410400--Sobic003G043400 Sobic003G312400 Sobic003G312400 Sobic003G410400--Sobic003G312400 Sobic009G201800 Sobic009G201800 Sobic003G410400--Sobic009G201800 Sobic003G252900 Sobic003G252900 Sobic003G410400--Sobic003G252900 Sobic003G319000 Sobic003G319000 Sobic003G410400--Sobic003G319000 Sobic003G039200 Sobic003G039200 Sobic003G410400--Sobic003G039200 Sobic003G031200 Sobic003G031200 Sobic003G410400--Sobic003G031200 Sobic004G010700 Sobic004G010700 Sobic003G410400--Sobic004G010700 Sobic008G058700--Sobic003G410400 Sobic004G083000 Sobic004G083000 Sobic008G058700--Sobic004G083000 Sobic003G126800 Sobic003G126800 Sobic008G058700--Sobic003G126800 Sobic008G058700--Sobic003G252900 Sobic009G070200 Sobic009G070200 Sobic008G058700--Sobic009G070200 Sobic008G058700--Sobic003G043400 Sobic002G044000 Sobic002G044000 Sobic008G058700--Sobic002G044000 Sobic003G358300 Sobic003G358300 Sobic008G058700--Sobic003G358300 Sobic009G160200 Sobic009G160200 Sobic008G058700--Sobic009G160200 Sobic002G423800 Sobic002G423800 Sobic003G043400--Sobic002G423800 Sobic001G010700 Sobic001G010700 Sobic003G043400--Sobic001G010700 Sobic002G428200 Sobic002G428200 Sobic003G043400--Sobic002G428200 Sobic008G137600 Sobic008G137600 Sobic003G043400--Sobic008G137600 Sobic002G261900 Sobic002G261900 Sobic003G043400--Sobic002G261900 Sobic001G532100 Sobic001G532100 Sobic003G043400--Sobic001G532100 Sobic004G335000 Sobic004G335000 Sobic003G043400--Sobic004G335000 Sobic007G152400 Sobic007G152400 Sobic003G043400--Sobic007G152400 Sobic006G222400 Sobic006G222400 Sobic003G043400--Sobic006G222400 Sobic003G312400--Sobic003G252900 Sobic003G312400--Sobic003G410400 Sobic003G312400--Sobic003G319000 Sobic004G168300 Sobic004G168300 Sobic003G312400--Sobic004G168300 Sobic003G092700 Sobic003G092700 Sobic003G312400--Sobic003G092700 Sobic010G168900 Sobic010G168900 Sobic003G312400--Sobic010G168900 Sobic006G129000 Sobic006G129000 Sobic003G312400--Sobic006G129000 Sobic010G059700 Sobic010G059700 Sobic003G312400--Sobic010G059700 Sobic002G297600 Sobic002G297600 Sobic003G312400--Sobic002G297600 Sobic009G201800--Sobic002G044000 Sobic009G201800--Sobic004G010700 Sobic004G249300 Sobic004G249300 Sobic009G201800--Sobic004G249300 Sobic001G382200 Sobic001G382200 Sobic009G201800--Sobic001G382200 Sobic009G258500 Sobic009G258500 Sobic009G201800--Sobic009G258500 Sobic009G212300 Sobic009G212300 Sobic009G201800--Sobic009G212300 Sobic001G285300 Sobic001G285300 Sobic009G201800--Sobic001G285300 Sobic009G234400 Sobic009G234400 Sobic009G201800--Sobic009G234400 Sobic003G028100 Sobic003G028100 Sobic009G201800--Sobic003G028100 Sobic003G252900--Sobic008G058700 Sobic003G252900--Sobic003G312400 Sobic003G252900--Sobic003G126800 Sobic003G252900--Sobic003G319000 Sobic003G252900--Sobic003G410400 Sobic001G294600 Sobic001G294600 Sobic003G252900--Sobic001G294600 Sobic003G252900--Sobic006G129000 Sobic009G182200 Sobic009G182200 Sobic003G252900--Sobic009G182200 Sobic010G088300 Sobic010G088300 Sobic003G252900--Sobic010G088300 Sobic001G196100 Sobic001G196100 Sobic003G319000--Sobic001G196100 Sobic003G319000--Sobic003G092700 Sobic003G319000--Sobic009G182200 Sobic001G026600 Sobic001G026600 Sobic003G319000--Sobic001G026600 Sobic003G319000--Sobic003G252900 Sobic003G319000--Sobic003G312400 Sobic001G418000 Sobic001G418000 Sobic003G319000--Sobic001G418000 Sobic003G319000--Sobic003G410400 Sobic003G023500 Sobic003G023500 Sobic003G319000--Sobic003G023500 Sobic003G039200--Sobic002G044000 Sobic003G039200--Sobic001G285300 Sobic003G039200--Sobic003G043400 Sobic001G506000 Sobic001G506000 Sobic003G039200--Sobic001G506000 Sobic003G039200--Sobic001G532100 Sobic003G039200--Sobic009G201800 Sobic003G039200--Sobic007G152400 Sobic003G039200--Sobic008G058700 Sobic006G094600 Sobic006G094600 Sobic003G039200--Sobic006G094600 Sobic003G031200--Sobic010G088300 Sobic004G242100 Sobic004G242100 Sobic003G031200--Sobic004G242100 Sobic002G359900 Sobic002G359900 Sobic003G031200--Sobic002G359900 Sobic008G111700 Sobic008G111700 Sobic003G031200--Sobic008G111700 Sobic002G129200 Sobic002G129200 Sobic003G031200--Sobic002G129200 Sobic003G031200--Sobic002G044000 Sobic003G031200--Sobic003G043400 Sobic001G402600 Sobic001G402600 Sobic003G031200--Sobic001G402600 Sobic003G031200--Sobic001G285300 Sobic004G010700--Sobic009G201800 Sobic004G010700--Sobic009G258500 Sobic002G054000 Sobic002G054000 Sobic004G010700--Sobic002G054000 Sobic002G101000 Sobic002G101000 Sobic004G010700--Sobic002G101000 Sobic002G277200 Sobic002G277200 Sobic004G010700--Sobic002G277200 Sobic006G129900 Sobic006G129900 Sobic004G010700--Sobic006G129900 Sobic004G010700--Sobic001G382200 Sobic004G010700--Sobic009G234400 Sobic009G104100 Sobic009G104100 Sobic004G010700--Sobic009G104100
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.