Gene annotation
Transcriptome id Sobic.008G058700.1
Synonym Sb08g004950
Functional annotation metal cation transporter, putative, expressed
UniProt C5YT45
Pfam PF02535
Panther DB PTHR11040 PTHR11040:SF70
NCBI CDD KOG2474; Zinc transporter and related ZIP domain-containing proteins
KEGG Orthology -
Gene Ontology GO:0016020; membrane


Orthologs (automatic annotation)
TAIR AT3G08650 : ZIP metal ion transporter family
RAP-DB (Rice) LOC_Os05g25194.2 : metal cation transporter, putative, expressed
MaizeGDB (Corn) Zm00025a054077
Brachypodium KQK23892 , KQK06916
Barley HORVU0Hr1G000410.1 , HORVU0Hr1G000410.3 , HORVU0Hr1G000410.5 , HORVU0Hr1G000410.4 , HORVU0Hr1G000410.7 , HORVU0Hr1G000410.6
Wheat TraesCS1D02G124300 , TraesCS1D02G124300 , TraesCS1B02G150000 , TraesCS1B02G150000 , TraesCS1A02G133400 , TraesCS1A02G133400
Populus -


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cDNA sequences
Sobic.008G058700


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G410400 zinc finger, C3HC4 type domain containing protein, expressed -
2 Sobic.004G083000 CRAL/TRIO domain containing protein, expressed -
3 Sobic.003G126800 cysteine proteinase inhibitor precursor protein, putative, expressed -
4 Sobic.003G252900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
5 Sobic.009G070200 Der1-like family domain containing protein, expressed K13989: Derlin-2/3
6 Sobic.003G043400 syntaxin, putative, expressed K08490: syntaxin 5
7 Sobic.002G044000 WD domain, G-beta repeat domain containing protein, expressed K03246: translation initiation factor 3 subunit I
8 Sobic.003G358300 josephin, putative, expressed K11863: ATXN3, Ataxin-3
9 Sobic.009G160200 prenylated rab acceptor, putative, expressed -
10 Sobic.007G216500 expressed protein -
11 Sobic.003G039200 ubiquitin-conjugating enzyme, putative, expressed K10573: UBE2A, UBC2, ubiquitin-conjugating enzyme E2 A
12 Sobic.009G201800 MPPN domain containing protein, expressed K14313: NUP35, nuclear pore complex protein Nup53
13 Sobic.001G294600 RNA recognition motif containing protein, putative, expressed K14396: PABPN1, polyadenylate-binding protein 2
14 Sobic.001G408100 Yip1 domain containing protein, expressed -
15 Sobic.010G088300 serine/threonine-protein phosphatase 2A activator 2, putative, expressed K17605: PPP2R4, serine/threonine-protein phosphatase 2A activator
16 Sobic.001G498400 - K18655: DDX19, ATP-dependent RNA helicase DDX19/DBP5
17 Sobic.008G111700 expressed protein -
18 Sobic.003G031200 translation initiation factor SUI1, putative, expressed -
19 Sobic.003G121600 gb protein, putative, expressed -
20 Sobic.003G189700 thioredoxin, putative, expressed -


Gene co-expression network
sample Sobic008G058700 Sobic008G058700 Sobic003G410400 Sobic003G410400 Sobic008G058700--Sobic003G410400 Sobic004G083000 Sobic004G083000 Sobic008G058700--Sobic004G083000 Sobic003G126800 Sobic003G126800 Sobic008G058700--Sobic003G126800 Sobic003G252900 Sobic003G252900 Sobic008G058700--Sobic003G252900 Sobic009G070200 Sobic009G070200 Sobic008G058700--Sobic009G070200 Sobic003G043400 Sobic003G043400 Sobic008G058700--Sobic003G043400 Sobic002G044000 Sobic002G044000 Sobic008G058700--Sobic002G044000 Sobic003G358300 Sobic003G358300 Sobic008G058700--Sobic003G358300 Sobic009G160200 Sobic009G160200 Sobic008G058700--Sobic009G160200 Sobic003G410400--Sobic008G058700 Sobic003G410400--Sobic003G043400 Sobic003G312400 Sobic003G312400 Sobic003G410400--Sobic003G312400 Sobic009G201800 Sobic009G201800 Sobic003G410400--Sobic009G201800 Sobic003G410400--Sobic003G252900 Sobic003G319000 Sobic003G319000 Sobic003G410400--Sobic003G319000 Sobic003G039200 Sobic003G039200 Sobic003G410400--Sobic003G039200 Sobic003G031200 Sobic003G031200 Sobic003G410400--Sobic003G031200 Sobic004G010700 Sobic004G010700 Sobic003G410400--Sobic004G010700 Sobic004G083000--Sobic008G058700 Sobic003G189700 Sobic003G189700 Sobic004G083000--Sobic003G189700 Sobic004G083000--Sobic003G043400 Sobic010G017000 Sobic010G017000 Sobic004G083000--Sobic010G017000 Sobic001G311100 Sobic001G311100 Sobic004G083000--Sobic001G311100 Sobic004G083000--Sobic009G160200 Sobic006G217700 Sobic006G217700 Sobic004G083000--Sobic006G217700 Sobic003G092700 Sobic003G092700 Sobic004G083000--Sobic003G092700 Sobic002G134400 Sobic002G134400 Sobic004G083000--Sobic002G134400 Sobic003G126800--Sobic008G058700 Sobic003G126800--Sobic003G252900 Sobic010G088300 Sobic010G088300 Sobic003G126800--Sobic010G088300 Sobic003G126800--Sobic003G031200 Sobic003G126800--Sobic009G070200 Sobic004G297300 Sobic004G297300 Sobic003G126800--Sobic004G297300 Sobic003G126800--Sobic003G358300 Sobic001G066700 Sobic001G066700 Sobic003G126800--Sobic001G066700 Sobic003G126800--Sobic003G039200 Sobic003G252900--Sobic008G058700 Sobic003G252900--Sobic003G312400 Sobic003G252900--Sobic003G126800 Sobic003G252900--Sobic003G319000 Sobic003G252900--Sobic003G410400 Sobic001G294600 Sobic001G294600 Sobic003G252900--Sobic001G294600 Sobic006G129000 Sobic006G129000 Sobic003G252900--Sobic006G129000 Sobic009G182200 Sobic009G182200 Sobic003G252900--Sobic009G182200 Sobic003G252900--Sobic010G088300 Sobic010G266300 Sobic010G266300 Sobic009G070200--Sobic010G266300 Sobic009G070200--Sobic001G066700 Sobic009G070200--Sobic002G044000 Sobic008G134900 Sobic008G134900 Sobic009G070200--Sobic008G134900 Sobic002G261900 Sobic002G261900 Sobic009G070200--Sobic002G261900 Sobic009G070200--Sobic003G358300 Sobic009G120100 Sobic009G120100 Sobic009G070200--Sobic009G120100 Sobic009G070200--Sobic003G043400 Sobic007G152400 Sobic007G152400 Sobic009G070200--Sobic007G152400 Sobic002G423800 Sobic002G423800 Sobic003G043400--Sobic002G423800 Sobic001G010700 Sobic001G010700 Sobic003G043400--Sobic001G010700 Sobic002G428200 Sobic002G428200 Sobic003G043400--Sobic002G428200 Sobic008G137600 Sobic008G137600 Sobic003G043400--Sobic008G137600 Sobic003G043400--Sobic002G261900 Sobic001G532100 Sobic001G532100 Sobic003G043400--Sobic001G532100 Sobic004G335000 Sobic004G335000 Sobic003G043400--Sobic004G335000 Sobic003G043400--Sobic007G152400 Sobic006G222400 Sobic006G222400 Sobic003G043400--Sobic006G222400 Sobic002G044000--Sobic009G201800 Sobic002G044000--Sobic003G358300 Sobic002G044000--Sobic009G070200 Sobic001G285300 Sobic001G285300 Sobic002G044000--Sobic001G285300 Sobic006G143500 Sobic006G143500 Sobic002G044000--Sobic006G143500 Sobic004G032000 Sobic004G032000 Sobic002G044000--Sobic004G032000 Sobic001G126200 Sobic001G126200 Sobic002G044000--Sobic001G126200 Sobic002G044000--Sobic007G152400 Sobic002G386300 Sobic002G386300 Sobic002G044000--Sobic002G386300 Sobic003G358300--Sobic001G066700 Sobic006G231700 Sobic006G231700 Sobic003G358300--Sobic006G231700 Sobic005G111100 Sobic005G111100 Sobic003G358300--Sobic005G111100 Sobic003G358300--Sobic002G044000 Sobic003G358300--Sobic004G032000 Sobic004G166500 Sobic004G166500 Sobic003G358300--Sobic004G166500 Sobic003G358300--Sobic002G386300 Sobic007G163700 Sobic007G163700 Sobic003G358300--Sobic007G163700 Sobic009G191200 Sobic009G191200 Sobic003G358300--Sobic009G191200 Sobic001G283500 Sobic001G283500 Sobic009G160200--Sobic001G283500 Sobic009G160200--Sobic006G222400 Sobic009G160200--Sobic001G311100 Sobic009G160200--Sobic010G017000 Sobic003G217100 Sobic003G217100 Sobic009G160200--Sobic003G217100 Sobic009G160200--Sobic002G261900 Sobic010G094600 Sobic010G094600 Sobic009G160200--Sobic010G094600 Sobic009G160200--Sobic003G043400 Sobic003G052400 Sobic003G052400 Sobic009G160200--Sobic003G052400
Octagon: transcription factors


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