Gene annotation
Transcriptome id Sobic.001G294600.1
Synonym ATPABN1, Sb01g028780, PABN1
Functional annotation RNA recognition motif containing protein, putative, expressed
UniProt A0A1B6QLU7
Pfam PF00076
Panther DB PTHR24012 PTHR24012:SF436
NCBI CDD -
KEGG Orthology K14396; PABPN1, polyadenylate-binding protein 2
Gene Ontology GO:0003676; nucleic acid binding


Orthologs (automatic annotation)
TAIR AT5G51120 : polyadenylate-binding protein 1
RAP-DB (Rice) LOC_Os06g11620.1 : RNA recognition motif containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G358200 reticulon domain containing protein, putative, expressed -
2 Sobic.003G252900 AAA-type ATPase family protein, putative, expressed K07767: katanin p60 ATPase-containing subunit A1
3 Sobic.008G058700 metal cation transporter, putative, expressed -
4 Sobic.006G107400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@no apical meristem protein, putative, expressed -
5 Sobic.005G084900 OsDegp12 - Putative Deg protease homologue, expressed -
6 Sobic.001G067000 expressed protein K12606: RCD1, CNOT9, CCR4-NOT transcription complex subunit 9
7 Sobic.001G168500 serpin domain containing protein, putative, expressed K13963: serpin B
8 Sobic.001G379000 aminotransferase, putative, expressed K00827: alanine-glyoxylate transaminase / (R)-3-amino-2-methylpropionate-pyruvate transaminase
9 Sobic.006G164000 expressed protein -
10 Sobic.003G129400 glycosyltransferase family 43 protein, putative, expressed K00735: galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1
11 Sobic.009G030400 eyes absent homolog 4, putative, expressed -
12 Sobic.002G420800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@stress responsive protein, putative, expressed -
13 Sobic.009G031600 expressed protein -
14 Sobic.007G216500 expressed protein -
15 Sobic.003G410400 zinc finger, C3HC4 type domain containing protein, expressed -
16 Sobic.003G226300 Ceramidase family protein (At)(PubMedID : 27208977)@neutral ceramidase precursor, putative, expressed K12349: neutral ceramidase
17 Sobic.006G131900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ethylene-responsive protein related, putative, expressed -
18 Sobic.006G223800 ZOS8-01 - C2H2 zinc finger protein, expressed -
19 Sobic.003G126800 cysteine proteinase inhibitor precursor protein, putative, expressed -
20 Sobic.004G282100 peptidase, putative, expressed K06013: STE24 endopeptidase


Gene co-expression network
sample Sobic001G294600 Sobic001G294600 Sobic003G358200 Sobic003G358200 Sobic001G294600--Sobic003G358200 Sobic003G252900 Sobic003G252900 Sobic001G294600--Sobic003G252900 Sobic008G058700 Sobic008G058700 Sobic001G294600--Sobic008G058700 Sobic006G107400 Sobic006G107400 Sobic001G294600--Sobic006G107400 Sobic005G084900 Sobic005G084900 Sobic001G294600--Sobic005G084900 Sobic001G067000 Sobic001G067000 Sobic001G294600--Sobic001G067000 Sobic001G168500 Sobic001G168500 Sobic001G294600--Sobic001G168500 Sobic001G379000 Sobic001G379000 Sobic001G294600--Sobic001G379000 Sobic006G164000 Sobic006G164000 Sobic001G294600--Sobic006G164000 Sobic010G093400 Sobic010G093400 Sobic003G358200--Sobic010G093400 Sobic002G420800 Sobic002G420800 Sobic003G358200--Sobic002G420800 Sobic007G152500 Sobic007G152500 Sobic003G358200--Sobic007G152500 Sobic003G358200--Sobic006G164000 Sobic003G358200--Sobic001G067000 Sobic003G358200--Sobic001G379000 Sobic003G358200--Sobic001G294600 Sobic001G419700 Sobic001G419700 Sobic003G358200--Sobic001G419700 Sobic010G207400 Sobic010G207400 Sobic003G358200--Sobic010G207400 Sobic003G252900--Sobic008G058700 Sobic003G312400 Sobic003G312400 Sobic003G252900--Sobic003G312400 Sobic003G126800 Sobic003G126800 Sobic003G252900--Sobic003G126800 Sobic003G319000 Sobic003G319000 Sobic003G252900--Sobic003G319000 Sobic003G410400 Sobic003G410400 Sobic003G252900--Sobic003G410400 Sobic003G252900--Sobic001G294600 Sobic006G129000 Sobic006G129000 Sobic003G252900--Sobic006G129000 Sobic009G182200 Sobic009G182200 Sobic003G252900--Sobic009G182200 Sobic010G088300 Sobic010G088300 Sobic003G252900--Sobic010G088300 Sobic008G058700--Sobic003G410400 Sobic004G083000 Sobic004G083000 Sobic008G058700--Sobic004G083000 Sobic008G058700--Sobic003G126800 Sobic008G058700--Sobic003G252900 Sobic009G070200 Sobic009G070200 Sobic008G058700--Sobic009G070200 Sobic003G043400 Sobic003G043400 Sobic008G058700--Sobic003G043400 Sobic002G044000 Sobic002G044000 Sobic008G058700--Sobic002G044000 Sobic003G358300 Sobic003G358300 Sobic008G058700--Sobic003G358300 Sobic009G160200 Sobic009G160200 Sobic008G058700--Sobic009G160200 Sobic006G107400--Sobic001G294600 Sobic006G107400--Sobic001G067000 Sobic005G110421 Sobic005G110421 Sobic006G107400--Sobic005G110421 Sobic006G107400--Sobic003G358200 Sobic001G437300 Sobic001G437300 Sobic006G107400--Sobic001G437300 Sobic006G107400--Sobic002G420800 Sobic009G178850 Sobic009G178850 Sobic006G107400--Sobic009G178850 Sobic007G216500 Sobic007G216500 Sobic006G107400--Sobic007G216500 Sobic003G197300 Sobic003G197300 Sobic006G107400--Sobic003G197300 Sobic009G002000 Sobic009G002000 Sobic005G084900--Sobic009G002000 Sobic009G030400 Sobic009G030400 Sobic005G084900--Sobic009G030400 Sobic005G084900--Sobic006G164000 Sobic002G280900 Sobic002G280900 Sobic005G084900--Sobic002G280900 Sobic005G084900--Sobic001G067000 Sobic005G084900--Sobic001G294600 Sobic010G059700 Sobic010G059700 Sobic005G084900--Sobic010G059700 Sobic004G145600 Sobic004G145600 Sobic005G084900--Sobic004G145600 Sobic010G141600 Sobic010G141600 Sobic005G084900--Sobic010G141600 Sobic003G026900 Sobic003G026900 Sobic001G067000--Sobic003G026900 Sobic006G143300 Sobic006G143300 Sobic001G067000--Sobic006G143300 Sobic001G067000--Sobic002G420800 Sobic002G230400 Sobic002G230400 Sobic001G067000--Sobic002G230400 Sobic007G076500 Sobic007G076500 Sobic001G067000--Sobic007G076500 Sobic002G147466 Sobic002G147466 Sobic001G067000--Sobic002G147466 Sobic004G196800 Sobic004G196800 Sobic001G067000--Sobic004G196800 Sobic007G199500 Sobic007G199500 Sobic001G067000--Sobic007G199500 Sobic010G193700 Sobic010G193700 Sobic001G067000--Sobic010G193700 Sobic002G193600 Sobic002G193600 Sobic001G168500--Sobic002G193600 Sobic001G168500--Sobic001G294600 Sobic001G168500--Sobic003G252900 Sobic003G226300 Sobic003G226300 Sobic001G168500--Sobic003G226300 Sobic001G168600 Sobic001G168600 Sobic001G168500--Sobic001G168600 Sobic004G264600 Sobic004G264600 Sobic001G168500--Sobic004G264600 Sobic007G225300 Sobic007G225300 Sobic001G168500--Sobic007G225300 Sobic004G172100 Sobic004G172100 Sobic001G168500--Sobic004G172100 Sobic001G480800 Sobic001G480800 Sobic001G168500--Sobic001G480800 Sobic003G129400 Sobic003G129400 Sobic001G379000--Sobic003G129400 Sobic001G379000--Sobic003G358200 Sobic009G156600 Sobic009G156600 Sobic001G379000--Sobic009G156600 Sobic001G206300 Sobic001G206300 Sobic001G379000--Sobic001G206300 Sobic001G379000--Sobic007G152500 Sobic004G155200 Sobic004G155200 Sobic001G379000--Sobic004G155200 Sobic001G379000--Sobic006G164000 Sobic008G092400 Sobic008G092400 Sobic001G379000--Sobic008G092400 Sobic001G379000--Sobic010G093400 Sobic006G164000--Sobic003G358200 Sobic004G155300 Sobic004G155300 Sobic006G164000--Sobic004G155300 Sobic006G164000--Sobic005G084900 Sobic006G164000--Sobic001G419700 Sobic006G164000--Sobic002G420800 Sobic003G159500 Sobic003G159500 Sobic006G164000--Sobic003G159500 Sobic004G345100 Sobic004G345100 Sobic006G164000--Sobic004G345100 Sobic002G400400 Sobic002G400400 Sobic006G164000--Sobic002G400400 Sobic001G170500 Sobic001G170500 Sobic006G164000--Sobic001G170500
Octagon: transcription factors


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